Wall clock time and date at job start Tue Mar 31 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09002 * 109.70852 * 270.09819 * 3 2 1 5 5 C 1.52890 * 109.61583 * 149.80147 * 3 2 1 6 6 O 1.42959 * 109.29820 * 188.11365 * 5 3 2 7 7 C 1.42957 * 114.16714 * 62.44931 * 6 5 3 8 8 C 1.53299 * 109.22172 * 297.41921 * 7 6 5 9 9 N 1.47151 * 109.68324 * 30.64465 * 3 2 1 10 10 C 1.34771 * 120.98003 * 350.27521 * 9 3 2 11 11 O 1.21350 * 120.00234 * 355.00734 * 10 9 3 12 12 C 1.49372 * 119.99445 * 175.00553 * 10 9 3 13 13 O 1.21351 * 120.00408 * 6.28315 * 12 10 9 14 14 N 1.34778 * 119.99524 * 186.28676 * 12 10 9 15 15 C 1.39121 * 119.99957 * 184.75944 * 14 12 10 16 16 C 1.39705 * 119.57744 * 174.88880 * 15 14 12 17 17 C 1.38651 * 119.49196 * 180.02562 * 16 15 14 18 18 C 1.38345 * 118.67115 * 359.97438 * 17 16 15 19 19 C 1.40593 * 119.13728 * 0.02562 * 18 17 16 20 20 C 1.41334 * 119.78745 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00265 * 359.97438 * 20 19 18 22 22 C 1.40032 * 120.00229 * 179.97438 * 20 19 18 23 23 N 1.30744 * 119.99614 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00407 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46699 * 59.99883 * 24 22 20 26 26 H 1.48503 * 109.47485 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47130 * 300.00235 * 24 22 20 28 28 N 1.31933 * 119.57408 * 354.62100 * 15 14 12 29 29 H 4.19116 * 14.98138 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.57775 * 68.10144 * 5 3 2 31 31 H 1.08999 * 109.36467 * 307.99921 * 5 3 2 32 32 H 1.09001 * 109.51529 * 177.49710 * 7 6 5 33 33 H 1.08998 * 109.55633 * 57.36578 * 7 6 5 34 34 H 1.08999 * 109.68120 * 292.57659 * 8 7 6 35 35 H 1.09005 * 109.67809 * 172.02540 * 8 7 6 36 36 H 0.97000 * 120.00308 * 5.04217 * 14 12 10 37 37 H 1.08001 * 120.25752 * 359.97438 * 16 15 14 38 38 H 1.07991 * 120.66713 * 179.97438 * 17 16 15 39 39 H 1.08002 * 120.43651 * 179.97438 * 18 17 16 40 40 H 0.97006 * 119.99465 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0136 -0.0009 1.0262 5 6 3.1587 1.2456 -0.7244 6 8 4.5756 1.1475 -0.8873 7 6 4.9972 0.0439 -1.6922 8 6 4.5796 -1.2652 -1.0124 9 7 3.1422 -1.1911 -0.7062 10 6 2.3040 -2.1830 -1.0668 11 8 1.1385 -2.1446 -0.7310 12 6 2.8097 -3.3295 -1.8797 13 8 3.9953 -3.4275 -2.1190 14 7 1.9491 -4.2552 -2.3476 15 6 2.4292 -5.3748 -3.0196 16 6 1.5403 -6.3807 -3.4063 17 6 2.0209 -7.4960 -4.0755 18 6 3.3760 -7.5776 -4.3416 19 6 4.2194 -6.5322 -3.9264 20 6 5.6061 -6.6017 -4.1905 21 1 6.0148 -7.4561 -4.7094 22 6 6.4501 -5.5626 -3.7795 23 7 5.9552 -4.5280 -3.1518 24 14 8.2830 -5.6548 -4.1280 25 1 8.5044 -5.7383 -5.5940 26 1 8.9499 -4.4395 -3.5955 27 1 8.8516 -6.8597 -3.4721 28 7 3.7174 -5.4703 -3.2880 29 1 -1.0500 -0.0005 0.0000 30 1 2.9201 2.1333 -0.1386 31 1 2.6837 1.3157 -1.7029 32 1 6.0813 0.0669 -1.8027 33 1 4.5296 0.1091 -2.6746 34 1 5.1452 -1.3965 -0.0899 35 1 4.7695 -2.1036 -1.6825 36 1 0.9946 -4.1389 -2.2193 37 1 0.4870 -6.2909 -3.1851 38 1 1.3507 -8.2851 -4.3829 39 1 3.7811 -8.4337 -4.8607 40 1 6.5400 -3.8084 -2.8667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890324618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:08 Heat of formation + Delta-G solvation = 48.291977 kcal Electronic energy + Delta-G solvation = -28402.279184 eV Core-core repulsion = 24379.853983 eV Total energy + Delta-G solvation = -4022.425201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.87110 -39.28101 -38.20504 -37.42271 -35.25509 -34.32752 -33.44651 -33.05835 -30.56279 -30.44893 -29.31740 -28.08342 -25.85227 -24.95730 -24.18263 -22.21177 -21.59425 -20.83068 -19.80023 -18.45617 -17.75405 -17.04959 -16.74314 -16.26182 -16.20166 -15.78306 -15.21797 -15.07112 -14.96499 -14.71628 -14.53914 -14.33777 -13.85855 -13.65079 -13.16026 -13.03602 -12.75297 -12.46997 -12.12460 -12.07271 -11.67175 -11.39858 -11.23505 -11.07992 -11.01261 -10.76428 -10.57378 -10.35545 -10.31832 -10.06242 -9.90448 -9.77799 -9.16285 -8.61227 -8.46056 -8.10328 -7.35741 -7.15218 -6.30078 -4.51623 1.79476 2.26397 2.76022 2.89875 3.02271 3.08849 3.11806 3.17815 3.19571 3.62536 3.81308 3.85735 3.96787 4.29552 4.63545 4.79223 4.84316 4.85616 5.06111 5.16281 5.28389 5.50007 5.64303 5.84622 5.89895 5.90259 5.99978 6.09628 6.30336 6.39630 6.51251 6.71634 6.73342 6.93969 7.12653 7.18789 7.36727 7.46602 7.69711 7.75102 7.76659 7.97343 8.07923 8.29810 8.54919 8.83954 8.93647 10.05879 10.33774 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.004662 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.347586 B = 6003.933652 C = 8079.425858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.189 4.189 3 C 0.224 3.776 4 H 0.101 0.899 5 C 0.062 3.938 6 O -0.380 6.380 7 C 0.047 3.953 8 C 0.014 3.986 9 N -0.587 5.587 10 C 0.509 3.491 11 O -0.510 6.510 12 C 0.474 3.526 13 O -0.380 6.380 14 N -0.633 5.633 15 C 0.365 3.635 16 C -0.347 4.347 17 C -0.036 4.036 18 C -0.299 4.299 19 C 0.272 3.728 20 C -0.423 4.423 21 H 0.083 0.917 22 C 0.062 3.938 23 N -0.666 5.666 24 Si 0.899 3.101 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.267 1.267 28 N -0.473 5.473 29 H 0.215 0.785 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.412 0.588 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 10.280 4.562 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.189 4.189 3 C 0.122 3.878 4 H 0.118 0.882 5 C -0.016 4.016 6 O -0.299 6.299 7 C -0.030 4.030 8 C -0.106 4.106 9 N -0.324 5.324 10 C 0.292 3.708 11 O -0.386 6.386 12 C 0.252 3.748 13 O -0.245 6.245 14 N -0.280 5.280 15 C 0.128 3.872 16 C -0.373 4.373 17 C -0.060 4.060 18 C -0.322 4.322 19 C 0.147 3.853 20 C -0.453 4.453 21 H 0.101 0.899 22 C -0.167 4.167 23 N -0.286 5.286 24 Si 0.723 3.277 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.191 1.191 28 N -0.192 5.192 29 H 0.232 0.768 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.197 0.803 36 H 0.248 0.752 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.639 11.264 5.036 12.618 hybrid contribution -0.724 -0.802 -0.277 1.115 sum -3.363 10.463 4.759 11.976 Atomic orbital electron populations 1.24606 0.95480 0.99460 0.98209 1.21880 0.93203 1.01198 1.02656 1.18587 0.85358 0.86406 0.97461 0.88157 1.22820 0.82160 0.96262 1.00376 1.87959 1.20924 1.49064 1.71912 1.23109 1.01230 0.85120 0.93543 1.24203 0.78096 1.03635 1.04665 1.48093 1.09598 1.17760 1.56905 1.20692 0.85722 0.83654 0.80750 1.90806 1.16960 1.76386 1.54405 1.20208 0.87929 0.83983 0.82680 1.90689 1.13045 1.69694 1.51081 1.42991 1.10218 1.20345 1.54467 1.18541 0.91960 0.84939 0.91801 1.20509 0.97855 0.99629 1.19258 1.20587 0.94944 0.95310 0.95145 1.21666 0.93927 1.02815 1.13777 1.18343 0.93379 0.85980 0.87606 1.19563 0.90577 1.04138 1.31041 0.89866 1.26132 1.00377 0.95383 0.94771 1.70300 1.35293 1.03444 1.19514 0.86532 0.82838 0.78609 0.79699 1.19153 1.20250 1.19146 1.68615 1.07662 1.24626 1.18319 0.76790 0.87311 0.92260 0.87220 0.92465 0.90786 0.80296 0.75179 0.88719 0.88320 0.88322 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 17.85 29.55 0.53 -1.52 16 2 C -0.19 -2.65 10.06 -37.12 -0.37 -3.02 16 3 C 0.22 2.95 3.51 -70.42 -0.25 2.70 16 4 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 5 C 0.06 0.70 6.23 37.10 0.23 0.93 16 6 O -0.38 -4.78 10.74 -35.23 -0.38 -5.16 16 7 C 0.05 0.59 6.98 37.31 0.26 0.85 16 8 C 0.01 0.20 6.45 -3.53 -0.02 0.18 16 9 N -0.59 -9.01 3.03 -168.71 -0.51 -9.52 16 10 C 0.51 8.98 7.62 -11.62 -0.09 8.89 16 11 O -0.51 -9.31 12.72 5.50 0.07 -9.24 16 12 C 0.47 9.48 7.77 -11.62 -0.09 9.39 16 13 O -0.38 -8.38 8.80 5.50 0.05 -8.33 16 14 N -0.63 -12.75 5.36 -11.83 -0.06 -12.81 16 15 C 0.37 8.62 7.42 -155.09 -1.15 7.47 16 16 C -0.35 -7.59 9.96 -38.88 -0.39 -7.97 16 17 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 18 C -0.30 -7.18 9.83 -38.65 -0.38 -7.56 16 19 C 0.27 7.23 6.55 -85.00 -0.56 6.68 16 20 C -0.42 -10.94 9.14 -37.73 -0.34 -11.28 16 21 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 22 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 23 N -0.67 -16.58 8.99 55.55 0.50 -16.08 16 24 Si 0.90 17.93 29.56 -169.99 -5.02 12.91 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 28 N -0.47 -12.49 5.73 -10.28 -0.06 -12.55 16 29 H 0.22 2.02 7.80 -54.09 -0.42 1.60 16 30 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.18 3.13 3.85 -56.68 -0.22 2.91 16 36 H 0.41 7.16 8.20 -40.82 -0.33 6.83 16 37 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -30.22 340.27 -7.73 -37.95 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.33 Total: 11.74 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.12 Total: 5.96 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.13 Total: -50.95 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.26 Total: -22.73 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.22 -7.73 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890324618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.241 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds