Wall clock time and date at job start Tue Mar 31 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09009 * 109.70854 * 251.03795 * 3 2 1 5 5 C 1.52876 * 109.52888 * 11.40019 * 3 2 1 6 6 O 1.42963 * 109.29781 * 67.69869 * 5 3 2 7 7 C 1.42957 * 114.16390 * 62.45087 * 6 5 3 8 8 C 1.53298 * 109.22397 * 297.41678 * 7 6 5 9 9 N 1.47151 * 109.68051 * 130.50636 * 3 2 1 10 10 C 1.34773 * 120.98217 * 110.83150 * 9 3 2 11 11 O 1.21363 * 120.00419 * 358.15103 * 10 9 3 12 12 C 1.49366 * 119.99913 * 178.14860 * 10 9 3 13 13 O 1.21354 * 120.00297 * 6.54953 * 12 10 9 14 14 N 1.34782 * 120.00086 * 186.54364 * 12 10 9 15 15 C 1.39109 * 119.99875 * 185.08118 * 14 12 10 16 16 C 1.39710 * 119.57712 * 174.60475 * 15 14 12 17 17 C 1.38657 * 119.49296 * 180.25643 * 16 15 14 18 18 C 1.38345 * 118.67047 * 359.47765 * 17 16 15 19 19 C 1.40595 * 119.13348 * 0.27702 * 18 17 16 20 20 C 1.41346 * 119.78222 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99673 * 359.97438 * 20 19 18 22 22 C 1.40026 * 119.99823 * 179.97438 * 20 19 18 23 23 N 1.30738 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47300 * 90.00494 * 24 22 20 26 26 H 1.48508 * 109.46917 * 210.00237 * 24 22 20 27 27 H 1.48497 * 109.47497 * 330.00030 * 24 22 20 28 28 N 1.31937 * 119.58188 * 354.32945 * 15 14 12 29 29 H 4.19119 * 14.98157 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.58260 * 307.68930 * 5 3 2 31 31 H 1.08997 * 109.41124 * 187.60872 * 5 3 2 32 32 H 1.09000 * 109.50960 * 177.49516 * 7 6 5 33 33 H 1.08996 * 109.51507 * 57.34226 * 7 6 5 34 34 H 1.08992 * 109.68309 * 292.57977 * 8 7 6 35 35 H 1.09003 * 109.71253 * 172.04501 * 8 7 6 36 36 H 0.96995 * 119.99675 * 5.08022 * 14 12 10 37 37 H 1.08004 * 120.25655 * 0.03135 * 16 15 14 38 38 H 1.07999 * 120.65993 * 179.74917 * 17 16 15 39 39 H 1.08004 * 120.43132 * 180.25386 * 18 17 16 40 40 H 0.97008 * 119.99929 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0135 0.3343 0.9705 5 6 3.1577 -1.4115 -0.2848 6 8 2.8332 -1.7692 -1.6304 7 6 3.4467 -0.9402 -2.6204 8 6 2.9448 0.4988 -2.4553 9 7 3.1412 0.9008 -1.0535 10 6 3.7612 2.0566 -0.7435 11 8 3.8884 2.3846 0.4180 12 6 4.2919 2.9341 -1.8296 13 8 4.0620 2.6683 -2.9911 14 7 5.0260 4.0211 -1.5195 15 6 5.4309 4.8960 -2.5223 16 6 6.0933 6.0777 -2.1805 17 6 6.4914 6.9511 -3.1811 18 6 6.2275 6.6171 -4.4974 19 6 5.5618 5.4107 -4.7772 20 6 5.2857 5.0556 -6.1172 21 1 5.5856 5.7103 -6.9220 22 6 4.6234 3.8550 -6.4011 23 7 4.2609 3.0622 -5.4267 24 14 4.2580 3.3861 -8.1719 25 1 5.3928 2.6010 -8.7205 26 1 3.0199 2.5674 -8.2218 27 1 4.0704 4.6169 -8.9813 28 7 5.1892 4.5969 -3.7844 29 1 -1.0500 0.0003 -0.0005 30 1 2.6884 -2.1156 0.4023 31 1 4.2391 -1.4387 -0.1515 32 1 3.1853 -1.3053 -3.6137 33 1 4.5292 -0.9648 -2.4959 34 1 1.8855 0.5493 -2.7068 35 1 3.5095 1.1626 -3.1101 36 1 5.2720 4.1932 -0.5972 37 1 6.2907 6.3108 -1.1446 38 1 7.0011 7.8716 -2.9380 39 1 6.5286 7.2746 -5.2996 40 1 3.8018 2.2306 -5.6234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890324625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:14 Heat of formation + Delta-G solvation = 37.105542 kcal Electronic energy + Delta-G solvation = -28289.976991 eV Core-core repulsion = 24267.066710 eV Total energy + Delta-G solvation = -4022.910281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86555 -39.31631 -38.24413 -37.40602 -35.31749 -34.39335 -33.40303 -33.00878 -30.81853 -30.45564 -29.34509 -28.15017 -25.85958 -24.97224 -24.09064 -22.38931 -21.70410 -20.95956 -19.63951 -18.22999 -17.88827 -17.11505 -16.99627 -16.31065 -16.10267 -15.84456 -15.40160 -15.05337 -14.95554 -14.72563 -14.54685 -14.31409 -13.88827 -13.64800 -13.24125 -13.02561 -12.75478 -12.34701 -12.11368 -12.08054 -11.76102 -11.26650 -11.22672 -11.05978 -10.89769 -10.75595 -10.69760 -10.58300 -10.33892 -10.07885 -10.03145 -9.91470 -9.17701 -8.80373 -8.69921 -8.11033 -7.39011 -7.16088 -6.30705 -4.51981 1.71226 2.13724 2.71991 2.74701 2.99325 3.07295 3.10172 3.12388 3.18382 3.65268 3.73608 3.85323 3.96538 4.18003 4.60111 4.70058 4.79473 4.99324 5.05342 5.20254 5.25234 5.35350 5.60542 5.77775 5.86804 5.89273 5.99446 6.10608 6.26506 6.38297 6.49976 6.70539 6.72868 6.96472 7.09360 7.15714 7.34598 7.45509 7.50428 7.68871 7.71566 7.93082 8.04840 8.28841 8.53076 8.82141 8.92893 10.05099 10.33225 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.004474 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.727899 B = 6257.342312 C = 7959.107208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.191 4.191 3 C 0.212 3.788 4 H 0.127 0.873 5 C 0.063 3.937 6 O -0.379 6.379 7 C 0.048 3.952 8 C 0.018 3.982 9 N -0.580 5.580 10 C 0.513 3.487 11 O -0.530 6.530 12 C 0.475 3.525 13 O -0.377 6.377 14 N -0.633 5.633 15 C 0.365 3.635 16 C -0.346 4.346 17 C -0.036 4.036 18 C -0.298 4.298 19 C 0.272 3.728 20 C -0.422 4.422 21 H 0.084 0.916 22 C 0.062 3.938 23 N -0.666 5.666 24 Si 0.898 3.102 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.263 1.263 28 N -0.473 5.473 29 H 0.219 0.781 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.413 0.587 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -8.608 7.454 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.192 4.192 3 C 0.109 3.891 4 H 0.144 0.856 5 C -0.015 4.015 6 O -0.297 6.297 7 C -0.029 4.029 8 C -0.103 4.103 9 N -0.315 5.315 10 C 0.297 3.703 11 O -0.407 6.407 12 C 0.253 3.747 13 O -0.242 6.242 14 N -0.280 5.280 15 C 0.128 3.872 16 C -0.372 4.372 17 C -0.060 4.060 18 C -0.321 4.321 19 C 0.147 3.853 20 C -0.453 4.453 21 H 0.102 0.898 22 C -0.167 4.167 23 N -0.285 5.285 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.187 1.187 28 N -0.193 5.193 29 H 0.236 0.764 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.193 0.807 36 H 0.249 0.751 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.935 -9.800 6.970 12.653 hybrid contribution 0.154 0.868 0.165 0.897 sum -3.782 -8.931 7.135 12.041 Atomic orbital electron populations 1.24892 0.95777 0.99577 0.99510 1.22908 0.94064 1.01074 1.01153 1.18685 0.84587 0.91760 0.94115 0.85574 1.22827 1.00048 0.93292 0.85296 1.87961 1.72079 1.55372 1.14278 1.23097 0.97198 0.89976 0.92615 1.24074 1.04831 0.98893 0.82452 1.48048 1.55847 1.19512 1.08054 1.20790 0.78323 0.81557 0.89610 1.90700 1.57448 1.71909 1.20594 1.20025 0.82204 0.83229 0.89209 1.90751 1.50999 1.64984 1.17466 1.42984 1.51300 1.23039 1.10678 1.18527 0.92965 0.86850 0.88905 1.20514 1.19055 0.99381 0.98252 1.20593 0.96004 0.96493 0.92905 1.21671 1.13297 1.01829 0.95339 1.18346 0.87842 0.86863 0.92265 1.19600 1.30793 1.03437 0.91449 0.89810 1.26130 0.95423 0.96653 0.98462 1.70299 1.20472 1.06570 1.31194 0.86477 0.78512 0.79466 0.83297 1.19575 1.20207 1.18732 1.68604 1.23855 1.31338 0.95454 0.76418 0.87444 0.91572 0.87392 0.92423 0.90987 0.80690 0.75122 0.88665 0.88292 0.88304 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 19.25 29.55 0.57 -1.57 16 2 C -0.19 -2.59 12.32 -37.12 -0.46 -3.05 16 3 C 0.21 2.78 3.07 -70.43 -0.22 2.57 16 4 H 0.13 1.61 7.09 -51.92 -0.37 1.24 16 5 C 0.06 0.70 6.31 37.09 0.23 0.93 16 6 O -0.38 -4.93 10.54 -35.23 -0.37 -5.30 16 7 C 0.05 0.61 6.98 37.31 0.26 0.87 16 8 C 0.02 0.27 6.08 -3.53 -0.02 0.25 16 9 N -0.58 -8.92 2.69 -168.72 -0.45 -9.37 16 10 C 0.51 8.95 7.77 -11.63 -0.09 8.86 16 11 O -0.53 -9.61 15.98 5.49 0.09 -9.52 16 12 C 0.48 9.45 7.76 -11.62 -0.09 9.36 16 13 O -0.38 -8.32 8.81 5.49 0.05 -8.27 16 14 N -0.63 -12.61 5.36 -11.83 -0.06 -12.68 16 15 C 0.37 8.56 7.42 -155.09 -1.15 7.41 16 16 C -0.35 -7.52 9.96 -38.88 -0.39 -7.91 16 17 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 18 C -0.30 -7.14 9.83 -38.65 -0.38 -7.52 16 19 C 0.27 7.21 6.55 -85.00 -0.56 6.65 16 20 C -0.42 -10.92 9.14 -37.73 -0.34 -11.26 16 21 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 22 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 23 N -0.67 -16.62 8.99 55.55 0.50 -16.12 16 24 Si 0.90 18.00 29.56 -169.99 -5.02 12.97 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 28 N -0.47 -12.46 5.73 -10.28 -0.06 -12.51 16 29 H 0.22 1.77 7.80 -54.09 -0.42 1.34 16 30 H 0.11 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.18 3.09 3.96 -56.38 -0.22 2.87 16 36 H 0.41 7.04 8.21 -40.82 -0.33 6.70 16 37 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 40 H 0.27 6.17 8.29 -40.82 -0.34 5.84 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -30.47 345.10 -7.54 -38.00 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.27 Total: 11.77 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -3.13 Total: 5.83 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.08 Total: -50.68 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.24 Total: -23.09 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.47 -7.54 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890324625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.109 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds