Wall clock time and date at job start Tue Mar 31 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46967 * 90.00540 * 3 2 1 5 5 H 1.48505 * 109.47170 * 210.00012 * 3 2 1 6 6 H 1.48498 * 109.47513 * 330.00626 * 3 2 1 7 7 C 1.38954 * 119.99693 * 179.73210 * 2 1 3 8 8 H 1.08001 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99538 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.47002 * 179.97438 * 12 10 9 14 14 C 1.35171 * 124.22448 * 269.72675 * 13 12 10 15 15 O 1.21238 * 127.29674 * 3.13465 * 14 13 12 16 16 C 1.51046 * 105.42180 * 183.00634 * 14 13 12 17 17 H 1.09004 * 111.68399 * 109.90004 * 16 14 13 18 18 C 1.50577 * 111.91130 * 235.26710 * 16 14 13 19 19 C 1.38724 * 117.95559 * 304.92825 * 18 16 14 20 20 C 1.37961 * 120.59443 * 182.54481 * 19 18 16 21 21 C 1.38266 * 119.48099 * 359.93584 * 20 19 18 22 22 C 1.37744 * 119.92742 * 359.44217 * 21 20 19 23 23 C 1.37841 * 121.81248 * 126.38613 * 18 16 14 24 24 C 1.50500 * 124.48540 * 356.78736 * 23 18 16 25 25 C 1.53003 * 112.36105 * 17.38900 * 24 23 18 26 26 N 1.46325 * 106.87185 * 319.27270 * 25 24 23 27 27 C 1.33226 * 131.33618 * 243.86721 * 26 25 24 28 28 O 1.21542 * 124.18901 * 344.89619 * 27 26 25 29 29 H 0.97005 * 120.00032 * 179.97438 * 1 2 3 30 30 H 0.96991 * 119.99873 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.08000 * 119.70329 * 2.56590 * 19 18 16 34 34 H 1.08003 * 120.26298 * 179.97438 * 20 19 18 35 35 H 1.08004 * 120.04263 * 179.45754 * 21 20 19 36 36 H 1.08001 * 119.54001 * 180.17378 * 22 21 20 37 37 H 1.08997 * 108.90950 * 256.63793 * 24 23 18 38 38 H 1.09005 * 108.82719 * 138.07403 * 24 23 18 39 39 H 1.08997 * 109.97334 * 199.93779 * 25 24 23 40 40 H 1.08993 * 110.05167 * 78.65528 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.6999 7 6 2.0088 -1.2034 0.0056 8 1 3.0889 -1.2034 0.0060 9 7 1.3233 -2.3907 0.0117 10 6 1.9972 -3.5579 0.0177 11 8 3.2101 -3.5579 0.0172 12 6 1.2436 -4.8629 0.0238 13 7 2.1956 -5.9765 0.0290 14 6 2.6856 -6.5631 -1.0859 15 8 2.4726 -6.2466 -2.2367 16 6 3.5574 -7.6945 -0.5945 17 1 3.1147 -8.6669 -0.8103 18 6 4.9582 -7.6018 -1.1391 19 6 5.1175 -7.5317 -2.5154 20 6 6.3779 -7.4980 -3.0755 21 6 7.4890 -7.5333 -2.2533 22 6 7.3308 -7.5900 -0.8862 23 6 6.0614 -7.6156 -0.3128 24 6 5.9996 -7.6522 1.1905 25 6 4.6290 -8.0952 1.7062 26 7 3.6269 -7.4464 0.8601 27 6 2.6864 -6.5460 1.1427 28 8 2.3178 -6.2738 2.2684 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3534 -2.3906 0.0125 31 1 0.6167 -4.9163 0.9139 32 1 0.6173 -4.9251 -0.8660 33 1 4.2472 -7.5029 -3.1541 34 1 6.4958 -7.4439 -4.1477 35 1 8.4800 -7.5163 -2.6825 36 1 8.2030 -7.6145 -0.2498 37 1 6.2177 -6.6567 1.5773 38 1 6.7560 -8.3464 1.5568 39 1 4.5015 -7.7808 2.7420 40 1 4.5340 -9.1785 1.6318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925365970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:11 Heat of formation + Delta-G solvation = -32.984591 kcal Electronic energy + Delta-G solvation = -28321.031123 eV Core-core repulsion = 24295.081505 eV Total energy + Delta-G solvation = -4025.949618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57901 -39.63448 -38.58285 -38.21604 -36.46034 -35.39439 -34.33180 -33.25907 -31.62001 -31.19512 -30.13384 -27.95522 -26.60733 -24.70236 -23.86493 -22.90413 -22.51320 -20.89101 -20.09135 -19.40754 -18.03479 -17.67621 -17.34139 -16.82901 -16.32435 -16.06041 -15.75967 -15.41563 -15.06773 -14.95067 -14.52938 -14.28742 -14.06367 -13.98171 -13.74551 -13.65713 -13.41046 -13.14970 -12.82543 -12.71948 -12.49079 -11.86355 -11.78038 -11.42969 -11.26418 -11.16969 -10.95101 -10.67951 -10.22111 -10.15701 -9.96523 -9.89384 -9.60042 -9.16644 -8.91922 -8.77188 -8.44791 -8.08723 -6.78787 -3.92119 1.07462 1.21903 1.74458 2.05617 2.95166 3.11999 3.28618 3.34813 3.54397 3.55762 3.73327 4.00729 4.16433 4.23668 4.47282 4.56193 4.71863 4.76549 4.84446 4.94033 4.96653 5.05434 5.17172 5.26838 5.36572 5.42223 5.45221 5.49869 5.58594 5.62502 5.79196 5.87925 5.93037 5.94695 6.26778 6.33712 6.37220 6.48027 6.81233 7.19713 7.44555 7.73928 8.03943 8.17232 8.53156 8.72409 9.40576 9.76596 10.64427 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.003674 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.184465 B = 7619.775839 C = 8220.083580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.007 4.007 3 Si 1.094 2.906 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.381 4.381 8 H 0.100 0.900 9 N -0.564 5.564 10 C 0.428 3.572 11 O -0.578 6.578 12 C 0.107 3.893 13 N -0.555 5.555 14 C 0.538 3.462 15 O -0.461 6.461 16 C 0.133 3.867 17 H 0.138 0.862 18 C -0.090 4.090 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.054 4.054 24 C -0.104 4.104 25 C 0.156 3.844 26 N -0.624 5.624 27 C 0.721 3.279 28 O -0.536 6.536 29 H 0.262 0.738 30 H 0.378 0.622 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 -20.806 -1.542 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.209 4.209 3 Si 0.920 3.080 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.511 4.511 8 H 0.117 0.883 9 N -0.202 5.202 10 C 0.212 3.788 11 O -0.463 6.463 12 C -0.018 4.018 13 N -0.299 5.299 14 C 0.324 3.676 15 O -0.329 6.329 16 C 0.025 3.975 17 H 0.155 0.845 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.140 4.140 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.054 4.054 24 C -0.142 4.142 25 C 0.035 3.965 26 N -0.362 5.362 27 C 0.424 3.576 28 O -0.409 6.409 29 H 0.074 0.926 30 H 0.211 0.789 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.912 -18.781 -1.405 21.283 hybrid contribution -0.371 -1.535 -0.087 1.582 sum 9.541 -20.317 -1.492 22.495 Atomic orbital electron populations 1.70872 1.06507 1.29520 1.46655 1.26552 0.96527 1.02645 0.95224 0.83085 0.74383 0.73300 0.77215 1.21006 1.20924 1.20518 1.20574 0.94714 0.83625 1.52153 0.88261 1.41830 1.08267 1.05328 1.64766 1.19826 0.88647 0.84678 0.85611 1.90554 1.13484 1.86714 1.55499 1.21419 0.90373 0.84545 1.05468 1.46000 1.43749 1.32445 1.07706 1.20420 0.79433 0.82707 0.84992 1.90766 1.58647 1.65959 1.17575 1.21004 0.94813 0.99551 0.82145 0.84479 1.19024 0.91811 1.04461 0.93844 1.21219 0.98577 0.97678 0.93860 1.21097 0.92283 1.00540 1.00066 1.21094 0.98901 0.99053 0.93656 1.21178 0.96319 1.01556 0.95283 1.19434 0.92398 0.98692 0.94898 1.20950 0.97831 1.03774 0.91635 1.21400 0.83883 0.96703 0.94524 1.47288 1.35266 1.45486 1.08192 1.15343 0.79468 0.78624 0.84185 1.90963 1.63226 1.66433 1.20285 0.92624 0.78909 0.86956 0.87282 0.84764 0.85565 0.85859 0.85875 0.89399 0.88948 0.87909 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.68 55.50 0.76 -24.57 16 2 C -0.01 -0.18 5.50 -17.47 -0.10 -0.28 16 3 Si 1.09 24.75 29.92 -169.99 -5.09 19.67 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.38 -11.00 9.68 -14.93 -0.14 -11.14 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.64 5.28 -10.96 -0.06 -14.70 16 10 C 0.43 10.67 7.85 -10.99 -0.09 10.59 16 11 O -0.58 -16.71 16.01 5.55 0.09 -16.62 16 12 C 0.11 2.03 6.23 -5.19 -0.03 2.00 16 13 N -0.55 -10.16 2.12 -122.33 -0.26 -10.42 16 14 C 0.54 9.07 7.55 -10.64 -0.08 8.98 16 15 O -0.46 -8.58 16.26 5.59 0.09 -8.49 16 16 C 0.13 1.70 3.80 -69.45 -0.26 1.44 16 17 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.09 -1.17 5.43 -104.65 -0.57 -1.73 16 19 C -0.09 -1.19 9.04 -39.50 -0.36 -1.55 16 20 C -0.12 -1.33 10.07 -39.67 -0.40 -1.73 16 21 C -0.11 -1.10 10.03 -39.75 -0.40 -1.49 16 22 C -0.13 -1.29 9.54 -39.36 -0.38 -1.67 16 23 C -0.05 -0.63 5.80 -104.46 -0.61 -1.23 16 24 C -0.10 -0.99 5.76 -27.98 -0.16 -1.15 16 25 C 0.16 1.52 7.10 -4.14 -0.03 1.49 16 26 N -0.62 -8.59 2.96 -174.15 -0.51 -9.10 16 27 C 0.72 12.89 8.35 -88.66 -0.74 12.15 16 28 O -0.54 -11.02 17.42 5.33 0.09 -10.93 16 29 H 0.26 7.10 6.78 -40.82 -0.28 6.83 16 30 H 0.38 8.89 6.73 -40.82 -0.27 8.62 16 31 H 0.11 1.92 7.84 -51.93 -0.41 1.51 16 32 H 0.11 1.79 8.04 -51.93 -0.42 1.37 16 33 H 0.13 1.68 6.83 -52.49 -0.36 1.32 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -38.10 344.83 -8.31 -46.41 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.28 Total: 8.89 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: -4.34 Total: 14.67 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.07 Total: -58.80 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: 0.27 Total: -36.04 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -38.10 -8.31 -46.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925365970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.426 kcal (2) G-P(sol) polarization free energy of solvation -38.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds