Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47323 * 300.00284 * 3 2 1 6 6 H 1.48506 * 109.46706 * 60.00103 * 3 2 1 7 7 C 1.38954 * 119.99564 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99248 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00440 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99725 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46689 * 179.97438 * 12 10 9 14 14 C 1.34864 * 124.15271 * 270.22432 * 13 12 10 15 15 O 1.21231 * 127.06966 * 1.03651 * 14 13 12 16 16 C 1.51518 * 105.86649 * 181.23625 * 14 13 12 17 17 H 1.08996 * 112.07741 * 117.81380 * 16 14 13 18 18 C 1.52819 * 109.93592 * 243.62062 * 16 14 13 19 19 C 1.50645 * 111.15878 * 156.46319 * 18 16 14 20 20 C 1.39202 * 116.93294 * 157.65693 * 19 18 16 21 21 C 1.37818 * 120.75052 * 179.34133 * 20 19 18 22 22 C 1.38265 * 119.87466 * 359.91413 * 21 20 19 23 23 C 1.37955 * 119.58108 * 0.32270 * 22 21 20 24 24 C 1.37594 * 123.88486 * 337.49829 * 19 18 16 25 25 C 1.51214 * 122.50186 * 1.96752 * 24 19 18 26 26 N 1.46134 * 108.47699 * 352.46465 * 25 24 19 27 27 C 1.33355 * 130.30848 * 220.31255 * 26 25 24 28 28 O 1.21543 * 123.91635 * 355.84143 * 27 26 25 29 29 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99163 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46739 * 60.00127 * 12 10 9 32 32 H 1.08995 * 109.47495 * 299.99946 * 12 10 9 33 33 H 1.09000 * 109.13714 * 276.89717 * 18 16 14 34 34 H 1.08997 * 109.14204 * 36.02789 * 18 16 14 35 35 H 1.07997 * 119.63019 * 359.37302 * 20 19 18 36 36 H 1.08003 * 120.06393 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.21395 * 180.29865 * 22 21 20 38 38 H 1.08006 * 119.72868 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.63076 * 232.77100 * 25 24 19 40 40 H 1.08995 * 109.63854 * 112.16288 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1957 -5.9765 -0.0007 14 6 2.6902 -6.5491 -1.1171 15 8 2.4525 -6.2383 -2.2646 16 6 3.6000 -7.6640 -0.6427 17 1 3.2560 -8.6432 -0.9758 18 6 5.0401 -7.3770 -1.0659 19 6 6.0215 -8.0955 -0.1770 20 6 7.2919 -8.3257 -0.6972 21 6 8.2555 -8.9644 0.0532 22 6 7.9630 -9.3818 1.3385 23 6 6.7038 -9.1602 1.8565 24 6 5.7309 -8.5235 1.0980 25 6 4.3647 -8.3486 1.7222 26 7 3.5502 -7.5254 0.8308 27 6 2.6854 -6.5491 1.1085 28 8 2.3733 -6.2199 2.2361 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6167 -4.9208 -0.8897 32 1 0.6174 -4.9206 0.8902 33 1 5.1825 -7.7064 -2.0951 34 1 5.2230 -6.3042 -1.0064 35 1 7.5255 -7.9998 -1.6999 36 1 9.2375 -9.1376 -0.3616 37 1 8.7155 -9.8785 1.9331 38 1 6.4728 -9.4849 2.8604 39 1 4.4641 -7.8542 2.6885 40 1 3.8942 -9.3231 1.8527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925366643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = -37.311834 kcal Electronic energy + Delta-G solvation = -27833.512948 eV Core-core repulsion = 23807.375687 eV Total energy + Delta-G solvation = -4026.137261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48956 -39.82050 -38.44422 -38.14882 -36.41813 -35.21269 -33.94693 -33.18135 -32.04740 -31.28531 -29.94805 -28.31522 -26.16297 -25.12553 -24.17697 -22.61695 -22.53860 -20.88573 -20.07299 -19.32205 -18.08298 -17.39977 -17.19874 -16.69891 -16.43585 -15.86231 -15.45372 -15.20762 -15.03522 -14.75980 -14.62642 -14.48843 -14.34476 -13.93631 -13.79100 -13.62504 -13.43567 -13.16787 -12.99611 -12.48612 -12.36325 -11.93506 -11.69667 -11.59670 -11.50781 -11.32072 -11.08115 -10.69031 -10.36163 -10.27024 -9.99231 -9.88820 -9.57940 -9.24277 -8.94685 -8.85614 -8.40950 -8.03353 -6.45879 -3.86891 1.05576 1.09372 1.79307 2.08627 2.96903 3.14497 3.22294 3.26239 3.33901 3.45189 3.77358 3.91976 4.15170 4.19411 4.41954 4.58812 4.68348 4.75246 4.82948 4.90249 4.97337 5.09299 5.16691 5.23449 5.33662 5.38036 5.47235 5.57801 5.59665 5.69785 5.71722 5.82829 5.87242 6.16006 6.19518 6.20522 6.26328 6.54829 6.70760 7.26401 7.50919 7.52091 7.97747 8.23896 8.52746 9.11594 9.44640 9.94167 10.71436 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.003097 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.147027 B = 9039.573618 C = 9479.984856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.552 5.552 10 C 0.426 3.574 11 O -0.587 6.587 12 C 0.107 3.893 13 N -0.552 5.552 14 C 0.532 3.468 15 O -0.465 6.465 16 C 0.095 3.905 17 H 0.135 0.865 18 C -0.081 4.081 19 C -0.062 4.062 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.097 4.097 25 C 0.195 3.805 26 N -0.624 5.624 27 C 0.718 3.282 28 O -0.538 6.538 29 H 0.273 0.727 30 H 0.394 0.606 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -21.746 0.169 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.188 5.188 10 C 0.210 3.790 11 O -0.472 6.472 12 C -0.018 4.018 13 N -0.295 5.295 14 C 0.319 3.681 15 O -0.334 6.334 16 C -0.013 4.013 17 H 0.152 0.848 18 C -0.119 4.119 19 C -0.063 4.063 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.098 4.098 25 C 0.074 3.926 26 N -0.363 5.363 27 C 0.421 3.579 28 O -0.411 6.411 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.669 -21.202 0.281 23.305 hybrid contribution -0.135 0.994 0.002 1.003 sum 9.535 -20.209 0.283 22.347 Atomic orbital electron populations 1.69621 1.05955 1.28274 1.49952 1.25295 0.95673 0.99810 0.96989 0.85769 0.79707 0.80911 0.77779 1.19198 1.20629 1.20618 1.19755 0.93428 0.81981 1.47735 0.87811 1.41765 1.09301 1.04387 1.63308 1.19888 0.88587 0.84928 0.85553 1.90532 1.13610 1.86894 1.56203 1.21442 0.90314 0.84465 1.05581 1.45846 1.43296 1.32729 1.07652 1.20599 0.79817 0.82784 0.84945 1.90793 1.59007 1.65569 1.18025 1.22345 0.96973 1.00067 0.81901 0.84777 1.20633 0.89505 1.02355 0.99363 1.19335 0.94994 0.98203 0.93722 1.21235 0.92628 0.99108 1.00354 1.21077 0.99235 0.98532 0.94684 1.21077 0.96585 1.00338 0.95808 1.20983 0.93088 0.99100 0.99712 1.19813 0.95704 1.00080 0.94220 1.20239 0.85623 0.94320 0.92402 1.47258 1.44299 1.38025 1.06680 1.15284 0.79223 0.79054 0.84366 1.90973 1.63331 1.66662 1.20170 0.91746 0.77197 0.87141 0.86929 0.88234 0.88565 0.85728 0.85896 0.85784 0.85565 0.87646 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.66 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 9 N -0.55 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.43 10.49 7.85 -10.99 -0.09 10.41 16 11 O -0.59 -16.57 16.01 5.55 0.09 -16.48 16 12 C 0.11 2.01 6.18 -5.19 -0.03 1.98 16 13 N -0.55 -9.90 2.10 -122.28 -0.26 -10.16 16 14 C 0.53 8.64 7.46 -10.54 -0.08 8.56 16 15 O -0.46 -8.55 17.76 5.60 0.10 -8.45 16 16 C 0.09 1.13 4.07 -67.90 -0.28 0.86 16 17 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.08 -0.92 5.29 -28.00 -0.15 -1.07 16 19 C -0.06 -0.67 5.75 -104.53 -0.60 -1.27 16 20 C -0.12 -1.07 9.54 -39.38 -0.38 -1.45 16 21 C -0.12 -0.96 10.04 -39.73 -0.40 -1.36 16 22 C -0.12 -0.95 10.06 -39.68 -0.40 -1.35 16 23 C -0.11 -0.93 9.61 -39.47 -0.38 -1.31 16 24 C -0.10 -0.99 5.84 -104.39 -0.61 -1.60 16 25 C 0.20 2.01 6.75 -5.14 -0.03 1.98 16 26 N -0.62 -8.44 3.00 -173.59 -0.52 -8.96 16 27 C 0.72 12.74 8.38 -88.80 -0.74 11.99 16 28 O -0.54 -11.17 17.34 5.33 0.09 -11.08 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 31 H 0.11 1.81 8.01 -51.93 -0.42 1.39 16 32 H 0.11 1.92 7.86 -51.93 -0.41 1.52 16 33 H 0.10 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.10 1.40 7.92 -51.93 -0.41 0.99 16 35 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 36 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.13 0.78 8.05 -52.48 -0.42 0.36 16 39 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -36.27 349.24 -8.44 -44.71 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.44 Total: 8.74 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: -4.40 Total: 18.29 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.11 Total: -57.27 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: 0.28 Total: -36.01 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.27 -8.44 -44.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925366643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.400 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds