Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47323 * 300.00284 * 3 2 1 6 6 H 1.48506 * 109.46706 * 60.00103 * 3 2 1 7 7 C 1.38954 * 119.99564 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99248 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00440 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99725 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46689 * 179.97438 * 12 10 9 14 14 C 1.34864 * 124.15271 * 270.22432 * 13 12 10 15 15 O 1.21231 * 127.06966 * 1.03651 * 14 13 12 16 16 C 1.51518 * 105.86649 * 181.23625 * 14 13 12 17 17 H 1.08996 * 112.07741 * 117.81380 * 16 14 13 18 18 C 1.52819 * 109.93592 * 243.62062 * 16 14 13 19 19 C 1.50645 * 111.15878 * 156.46319 * 18 16 14 20 20 C 1.39202 * 116.93294 * 157.65693 * 19 18 16 21 21 C 1.37818 * 120.75052 * 179.34133 * 20 19 18 22 22 C 1.38265 * 119.87466 * 359.91413 * 21 20 19 23 23 C 1.37955 * 119.58108 * 0.32270 * 22 21 20 24 24 C 1.37594 * 123.88486 * 337.49829 * 19 18 16 25 25 C 1.51214 * 122.50186 * 1.96752 * 24 19 18 26 26 N 1.46134 * 108.47699 * 352.46465 * 25 24 19 27 27 C 1.33355 * 130.30848 * 220.31255 * 26 25 24 28 28 O 1.21543 * 123.91635 * 355.84143 * 27 26 25 29 29 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99163 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46739 * 60.00127 * 12 10 9 32 32 H 1.08995 * 109.47495 * 299.99946 * 12 10 9 33 33 H 1.09000 * 109.13714 * 276.89717 * 18 16 14 34 34 H 1.08997 * 109.14204 * 36.02789 * 18 16 14 35 35 H 1.07997 * 119.63019 * 359.37302 * 20 19 18 36 36 H 1.08003 * 120.06393 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.21395 * 180.29865 * 22 21 20 38 38 H 1.08006 * 119.72868 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.63076 * 232.77100 * 25 24 19 40 40 H 1.08995 * 109.63854 * 112.16288 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1957 -5.9765 -0.0007 14 6 2.6902 -6.5491 -1.1171 15 8 2.4525 -6.2383 -2.2646 16 6 3.6000 -7.6640 -0.6427 17 1 3.2560 -8.6432 -0.9758 18 6 5.0401 -7.3770 -1.0659 19 6 6.0215 -8.0955 -0.1770 20 6 7.2919 -8.3257 -0.6972 21 6 8.2555 -8.9644 0.0532 22 6 7.9630 -9.3818 1.3385 23 6 6.7038 -9.1602 1.8565 24 6 5.7309 -8.5235 1.0980 25 6 4.3647 -8.3486 1.7222 26 7 3.5502 -7.5254 0.8308 27 6 2.6854 -6.5491 1.1085 28 8 2.3733 -6.2199 2.2361 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6167 -4.9208 -0.8897 32 1 0.6174 -4.9206 0.8902 33 1 5.1825 -7.7064 -2.0951 34 1 5.2230 -6.3042 -1.0064 35 1 7.5255 -7.9998 -1.6999 36 1 9.2375 -9.1376 -0.3616 37 1 8.7155 -9.8785 1.9331 38 1 6.4728 -9.4849 2.8604 39 1 4.4641 -7.8542 2.6885 40 1 3.8942 -9.3231 1.8527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925366643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -61.814681 kcal Electronic energy + Delta-G solvation = -27834.575471 eV Core-core repulsion = 23807.375687 eV Total energy + Delta-G solvation = -4027.199784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.73736 -40.69662 -40.01433 -39.79618 -37.60428 -36.62446 -35.96657 -34.01680 -33.48514 -32.89803 -30.83864 -29.69758 -27.27213 -26.73357 -25.49055 -23.73318 -23.27605 -22.23394 -21.25591 -20.80568 -20.08579 -18.71252 -18.52921 -17.94839 -17.49736 -17.27455 -16.80664 -16.55780 -16.20617 -15.96972 -15.78418 -15.74823 -15.62514 -15.54908 -15.42608 -14.77969 -14.56009 -14.15527 -13.99050 -13.78446 -13.60735 -13.38614 -13.23101 -12.91505 -12.71142 -12.50926 -12.26181 -12.18069 -12.12285 -11.89701 -11.61910 -11.48644 -11.27944 -10.43878 -10.17910 -10.13057 -9.65777 -9.57066 -8.54835 -6.04913 0.36111 0.43680 0.51277 0.84663 1.31098 1.38234 1.52688 1.79702 1.86007 1.91481 2.25895 2.75755 2.79485 3.06808 3.10460 3.29207 3.56144 3.77696 3.86350 3.95689 4.00080 4.06139 4.19040 4.22261 4.30814 4.40337 4.45053 4.47473 4.64473 4.66376 4.70856 4.82442 5.04938 5.10575 5.27674 5.33267 5.52969 5.62271 5.65066 5.86445 5.97067 6.07865 6.21653 6.45310 6.90270 7.00950 7.38512 7.92464 8.62373 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.003097 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.147027 B = 9039.573618 C = 9479.984856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.558 5.558 10 C 0.420 3.580 11 O -0.630 6.630 12 C 0.115 3.885 13 N -0.562 5.562 14 C 0.525 3.475 15 O -0.491 6.491 16 C 0.107 3.893 17 H 0.183 0.817 18 C -0.075 4.075 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.110 4.110 25 C 0.190 3.810 26 N -0.613 5.613 27 C 0.709 3.291 28 O -0.579 6.579 29 H 0.281 0.719 30 H 0.400 0.600 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.255 -23.494 0.220 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.194 5.194 10 C 0.207 3.793 11 O -0.517 6.517 12 C -0.010 4.010 13 N -0.306 5.306 14 C 0.314 3.686 15 O -0.362 6.362 16 C 0.001 3.999 17 H 0.200 0.800 18 C -0.113 4.113 19 C -0.084 4.084 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.111 4.111 25 C 0.070 3.930 26 N -0.350 5.350 27 C 0.412 3.588 28 O -0.455 6.455 29 H 0.091 0.909 30 H 0.235 0.765 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.115 0.885 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.598 -22.999 0.319 25.325 hybrid contribution -0.355 1.490 -0.010 1.532 sum 10.243 -21.508 0.310 23.825 Atomic orbital electron populations 1.69670 1.06810 1.29633 1.49204 1.26097 0.96622 1.02470 0.95684 0.84841 0.77871 0.76771 0.78637 1.20014 1.19124 1.19241 1.19682 0.92653 0.83790 1.50630 0.90521 1.41804 1.09511 1.04436 1.63665 1.20880 0.88450 0.86423 0.83577 1.90493 1.15738 1.87870 1.57631 1.21352 0.90140 0.81822 1.07683 1.46011 1.43512 1.32417 1.08630 1.21326 0.79711 0.83346 0.84226 1.90770 1.60011 1.66624 1.18844 1.22603 0.96328 1.00317 0.80652 0.80003 1.20574 0.89286 1.00125 1.01274 1.19344 0.95464 0.99411 0.94174 1.21428 0.92398 0.99315 1.01153 1.21412 0.99905 0.97715 0.94860 1.21457 0.96880 0.99564 0.95869 1.21263 0.92904 0.98480 1.00507 1.19889 0.95917 1.00965 0.94289 1.20586 0.85858 0.95123 0.91395 1.47438 1.42929 1.36754 1.07928 1.15502 0.79870 0.79737 0.83710 1.90932 1.64996 1.68150 1.21444 0.90922 0.76511 0.84528 0.85141 0.85855 0.92609 0.84765 0.83737 0.83241 0.83369 0.88531 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.79 13.05 21.67 0.28 -49.50 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.34 -19.89 9.68 84.04 0.81 -19.08 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 9 N -0.56 -29.94 5.29 -306.99 -1.62 -31.56 16 10 C 0.42 21.51 7.85 87.66 0.69 22.19 16 11 O -0.63 -37.29 16.01 -3.05 -0.05 -37.34 16 12 C 0.12 4.42 6.18 85.63 0.53 4.95 16 13 N -0.56 -20.46 2.10 -777.80 -1.63 -22.09 16 14 C 0.53 17.04 7.46 87.90 0.66 17.70 16 15 O -0.49 -18.20 17.76 -2.88 -0.05 -18.25 16 16 C 0.11 2.43 4.07 44.14 0.18 2.61 16 17 H 0.18 2.46 8.14 -2.39 -0.02 2.44 16 18 C -0.07 -1.67 5.29 29.77 0.16 -1.51 16 19 C -0.08 -1.68 5.75 -19.80 -0.11 -1.79 16 20 C -0.13 -2.12 9.54 22.40 0.21 -1.91 16 21 C -0.12 -1.67 10.04 22.18 0.22 -1.45 16 22 C -0.12 -1.52 10.06 22.21 0.22 -1.30 16 23 C -0.11 -1.61 9.61 22.34 0.21 -1.39 16 24 C -0.11 -2.03 5.84 -19.71 -0.12 -2.15 16 25 C 0.19 3.61 6.75 85.87 0.58 4.19 16 26 N -0.61 -16.09 3.00 -822.18 -2.47 -18.57 16 27 C 0.71 25.43 8.38 179.71 1.51 26.94 16 28 O -0.58 -24.60 17.34 -3.85 -0.07 -24.67 16 29 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 31 H 0.14 4.47 8.01 -2.39 -0.02 4.45 16 32 H 0.13 4.51 7.86 -2.39 -0.02 4.49 16 33 H 0.12 2.08 8.07 -2.39 -0.02 2.06 16 34 H 0.06 1.70 7.92 -2.39 -0.02 1.68 16 35 H 0.13 1.89 8.04 -2.91 -0.02 1.87 16 36 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.15 1.37 8.05 -2.91 -0.02 1.34 16 39 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -81.90 349.24 3.01 -78.89 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.37 Total: 29.25 kcal Atomic # 6 Polarization: 41.81 SS G_CDS: 6.22 Total: 48.03 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -5.44 Total: -121.72 kcal Atomic # 8 Polarization: -80.09 SS G_CDS: -0.17 Total: -80.26 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -81.90 3.01 -78.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925366643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.076 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds