Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48501 * 109.46990 * 239.99788 * 3 2 1 5 5 H 1.48496 * 109.47251 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46671 * 120.00427 * 3 2 1 7 7 C 1.38956 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00518 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99627 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00318 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47165 * 179.97438 * 12 10 9 14 14 C 1.34890 * 124.17261 * 270.22438 * 13 12 10 15 15 O 1.21241 * 127.06117 * 359.05470 * 14 13 12 16 16 C 1.51506 * 105.87508 * 179.34323 * 14 13 12 17 17 H 1.08997 * 112.55310 * 241.68171 * 16 14 13 18 18 C 1.52809 * 109.95050 * 116.10410 * 16 14 13 19 19 C 1.50657 * 111.10531 * 203.30186 * 18 16 14 20 20 C 1.39187 * 116.94207 * 201.84518 * 19 18 16 21 21 C 1.37827 * 120.74389 * 181.46839 * 20 19 18 22 22 C 1.38267 * 119.86555 * 359.97295 * 21 20 19 23 23 C 1.37950 * 119.59326 * 359.67132 * 22 21 20 24 24 C 1.37598 * 123.84830 * 22.72974 * 19 18 16 25 25 C 1.51204 * 122.51685 * 358.07581 * 24 19 18 26 26 N 1.46123 * 108.51834 * 7.25705 * 25 24 19 27 27 C 1.33355 * 130.33860 * 140.53098 * 26 25 24 28 28 O 1.21543 * 123.91635 * 4.20671 * 27 26 25 29 29 H 0.96995 * 119.99817 * 359.97438 * 1 2 3 30 30 H 0.97010 * 119.99833 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47516 * 60.00102 * 12 10 9 32 32 H 1.08996 * 109.47327 * 300.00160 * 12 10 9 33 33 H 1.09007 * 109.14925 * 82.88891 * 18 16 14 34 34 H 1.08998 * 109.11462 * 323.69705 * 18 16 14 35 35 H 1.08002 * 119.63098 * 1.49548 * 20 19 18 36 36 H 1.08005 * 120.06533 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.20348 * 179.64759 * 22 21 20 38 38 H 1.07998 * 119.72469 * 180.09998 * 23 22 21 39 39 H 1.08995 * 109.63067 * 247.54421 * 25 24 19 40 40 H 1.09002 * 109.62863 * 126.96730 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1958 -5.9765 -0.0007 14 6 2.6906 -6.5495 -1.1171 15 8 2.4276 -6.2606 -2.2648 16 6 3.6369 -7.6332 -0.6421 17 1 4.6634 -7.4638 -0.9673 18 6 3.1190 -9.0041 -1.0749 19 6 3.6655 -10.0945 -0.1904 20 6 3.6767 -11.3844 -0.7132 21 6 4.1316 -12.4457 0.0392 22 6 4.5837 -12.2321 1.3283 23 6 4.5814 -10.9543 1.8481 24 6 4.1279 -9.8844 1.0884 25 6 4.1708 -8.5121 1.7220 26 7 3.4994 -7.5684 0.8311 27 6 2.6855 -6.5490 1.1084 28 8 2.4150 -6.1846 2.2359 29 1 -0.4849 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6168 -4.9209 -0.8897 32 1 0.6175 -4.9205 0.8902 33 1 3.4233 -9.1927 -2.1045 34 1 2.0305 -9.0089 -1.0172 35 1 3.3252 -11.5555 -1.7201 36 1 4.1350 -13.4422 -0.3773 37 1 4.9361 -13.0606 1.9248 38 1 4.9356 -10.7847 2.8542 39 1 5.2074 -8.2069 1.8646 40 1 3.6578 -8.5365 2.6834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925366644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = -37.106477 kcal Electronic energy + Delta-G solvation = -27604.985875 eV Core-core repulsion = 23578.857518 eV Total energy + Delta-G solvation = -4026.128356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50177 -39.90037 -38.44521 -38.15119 -36.44162 -35.22008 -33.94261 -33.26901 -32.09830 -31.28602 -30.01244 -28.34085 -26.19263 -25.15755 -24.19088 -22.67557 -22.59329 -20.86257 -20.17600 -19.28249 -18.06744 -17.48729 -17.22705 -16.76375 -16.38157 -15.88790 -15.51572 -15.24597 -15.08214 -14.74824 -14.65448 -14.56834 -14.38981 -13.94125 -13.80156 -13.62446 -13.49698 -13.25320 -13.04781 -12.49991 -12.42447 -12.02391 -11.70060 -11.60894 -11.56864 -11.39923 -11.03845 -10.69786 -10.45498 -10.25422 -10.00513 -9.88290 -9.55448 -9.29674 -9.02694 -8.93142 -8.40689 -8.02956 -6.45172 -3.86298 0.95681 0.99533 1.79288 2.09000 2.95092 3.18791 3.21430 3.25399 3.30533 3.35944 3.77549 3.88965 4.12849 4.16248 4.34986 4.49810 4.60514 4.72424 4.76098 4.89320 4.94497 5.03200 5.16588 5.20566 5.25367 5.29954 5.43522 5.47638 5.58267 5.60742 5.67962 5.71720 5.83975 6.08301 6.11907 6.16847 6.19902 6.52254 6.61346 7.26029 7.50747 7.52182 7.97753 8.24010 8.53318 9.11859 9.44954 9.94675 10.71973 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032002 B = 0.002648 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.745076 B =10570.767460 C =10932.067780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.551 5.551 10 C 0.426 3.574 11 O -0.588 6.588 12 C 0.108 3.892 13 N -0.551 5.551 14 C 0.534 3.466 15 O -0.465 6.465 16 C 0.094 3.906 17 H 0.136 0.864 18 C -0.077 4.077 19 C -0.067 4.067 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.094 4.094 25 C 0.194 3.806 26 N -0.624 5.624 27 C 0.718 3.282 28 O -0.537 6.537 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -25.125 0.213 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.187 5.187 10 C 0.210 3.790 11 O -0.473 6.473 12 C -0.017 4.017 13 N -0.295 5.295 14 C 0.320 3.680 15 O -0.334 6.334 16 C -0.014 4.014 17 H 0.153 0.847 18 C -0.115 4.115 19 C -0.067 4.067 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.095 4.095 25 C 0.073 3.927 26 N -0.363 5.363 27 C 0.420 3.580 28 O -0.410 6.410 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.617 -24.567 0.327 25.203 hybrid contribution -0.144 0.903 -0.001 0.915 sum 5.473 -23.663 0.326 24.290 Atomic orbital electron populations 1.69600 1.05950 1.28490 1.49775 1.25293 0.95677 0.99809 0.96954 0.85879 0.78779 0.80214 0.79137 1.19817 1.20859 1.19816 1.19656 0.93381 0.81999 1.47978 0.87903 1.41750 1.09292 1.04369 1.63278 1.19879 0.88585 0.84921 0.85603 1.90532 1.13613 1.86895 1.56247 1.21434 0.90286 0.84472 1.05545 1.45848 1.43244 1.32768 1.07643 1.20543 0.80353 0.82137 0.84924 1.90794 1.59754 1.64926 1.17964 1.22351 1.01786 0.95370 0.81861 0.84658 1.20622 1.01553 0.89621 0.99670 1.19332 0.99196 0.94499 0.93716 1.21225 1.00033 0.91868 1.00204 1.21085 0.98956 0.98930 0.94647 1.21095 0.99921 0.96833 0.95793 1.21009 0.99870 0.92124 0.99867 1.19844 1.00388 0.95146 0.94127 1.20237 0.97723 0.82599 0.92157 1.47237 1.50022 1.32290 1.06756 1.15279 0.78828 0.79451 0.84394 1.90979 1.63387 1.66446 1.20204 0.91640 0.77190 0.87121 0.87003 0.88101 0.89374 0.85754 0.85889 0.85747 0.85487 0.89344 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 9 N -0.55 -14.31 5.29 -10.97 -0.06 -14.36 16 10 C 0.43 10.51 7.85 -10.99 -0.09 10.42 16 11 O -0.59 -16.63 16.01 5.54 0.09 -16.54 16 12 C 0.11 2.03 6.18 -5.20 -0.03 2.00 16 13 N -0.55 -9.93 2.10 -122.27 -0.26 -10.19 16 14 C 0.53 8.70 7.47 -10.54 -0.08 8.62 16 15 O -0.47 -8.55 17.75 5.59 0.10 -8.45 16 16 C 0.09 1.14 4.06 -67.90 -0.28 0.86 16 17 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 18 C -0.08 -0.71 5.29 -28.00 -0.15 -0.85 16 19 C -0.07 -0.60 5.75 -104.52 -0.60 -1.20 16 20 C -0.12 -0.86 9.54 -39.38 -0.38 -1.24 16 21 C -0.12 -0.80 10.04 -39.72 -0.40 -1.20 16 22 C -0.12 -0.79 10.06 -39.68 -0.40 -1.19 16 23 C -0.11 -0.81 9.61 -39.47 -0.38 -1.19 16 24 C -0.09 -0.84 5.84 -104.39 -0.61 -1.45 16 25 C 0.19 1.96 6.75 -5.15 -0.03 1.93 16 26 N -0.62 -8.41 3.01 -173.60 -0.52 -8.93 16 27 C 0.72 12.75 8.38 -88.80 -0.74 12.01 16 28 O -0.54 -11.21 17.37 5.33 0.09 -11.12 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 31 H 0.11 1.82 8.00 -51.93 -0.42 1.40 16 32 H 0.11 1.92 7.89 -51.93 -0.41 1.51 16 33 H 0.10 0.74 8.07 -51.92 -0.42 0.32 16 34 H 0.09 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.12 0.71 8.04 -52.49 -0.42 0.29 16 36 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.69 8.05 -52.49 -0.42 0.27 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 1.05 8.11 -51.93 -0.42 0.63 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -36.21 349.29 -8.44 -44.65 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.45 Total: 7.77 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: -4.40 Total: 19.41 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.11 Total: -57.27 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: 0.28 Total: -36.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.21 -8.44 -44.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925366644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.545 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds