Wall clock time and date at job start Tue Mar 31 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00249 * 2 1 4 4 H 1.48507 * 109.46922 * 240.00039 * 3 2 1 5 5 H 1.48502 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47390 * 120.00030 * 3 2 1 7 7 C 1.38815 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00110 * 194.62944 * 7 2 1 9 9 N 1.36939 * 119.99728 * 14.35231 * 7 2 1 10 10 C 1.46957 * 120.59816 * 28.36581 * 9 7 2 11 11 C 1.53812 * 108.39898 * 124.75773 * 10 9 7 12 12 N 1.46965 * 108.57791 * 49.63798 * 11 10 9 13 13 C 1.34776 * 120.58909 * 124.67138 * 12 11 10 14 14 O 1.21608 * 119.99662 * 184.17595 * 13 12 11 15 15 C 1.47429 * 120.00504 * 4.17533 * 13 12 11 16 16 C 1.38049 * 126.41171 * 43.43797 * 15 13 12 17 17 N 1.34255 * 107.41350 * 179.97438 * 16 15 13 18 18 H 0.97004 * 125.75043 * 180.02562 * 17 16 15 19 19 N 1.39929 * 108.49562 * 0.02562 * 17 16 15 20 20 C 1.30451 * 108.89790 * 359.75017 * 19 17 16 21 21 S 1.76197 * 125.99081 * 180.26098 * 20 19 17 22 22 N 1.65601 * 107.22089 * 270.14602 * 21 20 19 23 23 O 1.42107 * 106.40300 * 23.68942 * 21 20 19 24 24 O 1.42106 * 106.40046 * 156.60312 * 21 20 19 25 25 C 1.46963 * 118.81401 * 304.64526 * 12 11 10 26 26 C 1.46965 * 120.58972 * 208.64639 * 9 7 2 27 27 H 0.96999 * 119.99703 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.61390 * 244.53947 * 10 9 7 29 29 H 1.09003 * 109.60930 * 5.05694 * 10 9 7 30 30 H 1.09001 * 109.74101 * 289.85186 * 11 10 9 31 31 H 1.09003 * 109.53295 * 169.30728 * 11 10 9 32 32 H 1.08000 * 126.28880 * 359.93919 * 16 15 13 33 33 H 0.96999 * 119.99966 * 149.99583 * 22 21 20 34 34 H 0.97000 * 119.99892 * 330.00436 * 22 21 20 35 35 H 1.08996 * 109.60925 * 295.48672 * 25 12 11 36 36 H 1.08997 * 109.60703 * 174.96655 * 25 12 11 37 37 H 1.09003 * 109.61361 * 354.94846 * 26 9 7 38 38 H 1.09001 * 109.60860 * 115.46085 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0640 -1.2173 0.2368 9 7 1.3575 -2.3697 -0.2929 10 6 0.1811 -2.3680 -1.1737 11 6 0.4377 -3.3511 -2.3284 12 7 0.8975 -4.6275 -1.7632 13 6 0.2551 -5.7765 -2.0521 14 8 0.5972 -6.8148 -1.5194 15 6 -0.8624 -5.7747 -3.0137 16 6 -0.9018 -5.1100 -4.2230 17 7 -2.0926 -5.3701 -4.7858 18 1 -2.3997 -5.0350 -5.6428 19 7 -2.8160 -6.2059 -3.9279 20 6 -2.0915 -6.4571 -2.8726 21 16 -2.5640 -7.4678 -1.5088 22 7 -3.3149 -6.4853 -0.4074 23 8 -3.5585 -8.3588 -1.9953 24 8 -1.3584 -7.9072 -0.8984 25 6 2.0706 -4.6285 -0.8780 26 6 1.8173 -3.6460 0.2723 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6978 -2.6821 -0.6108 29 1 0.0243 -1.3658 -1.5726 30 1 1.2029 -2.9481 -2.9919 31 1 -0.4862 -3.5090 -2.8848 32 1 -0.1188 -4.4936 -4.6393 33 1 -4.0065 -6.8440 0.1703 34 1 -3.0631 -5.5509 -0.3400 35 1 2.9519 -4.3164 -1.4382 36 1 2.2249 -5.6300 -0.4764 37 1 2.7412 -3.4882 0.8286 38 1 1.0521 -4.0491 0.9358 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950416789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:45 Heat of formation + Delta-G solvation = 14.152082 kcal Electronic energy + Delta-G solvation = -27147.346851 eV Core-core repulsion = 23155.344840 eV Total energy + Delta-G solvation = -3992.002010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76899 -39.21389 -37.08587 -36.64379 -35.73005 -33.90956 -33.20568 -32.32385 -31.83509 -30.59994 -29.88038 -26.98400 -24.19588 -23.58707 -22.98267 -22.48531 -20.58859 -19.50114 -19.25101 -17.88383 -17.60927 -17.31521 -16.90453 -16.00788 -15.85611 -15.52211 -15.39602 -15.15597 -14.76731 -14.45198 -13.81088 -13.71975 -13.37884 -13.33482 -13.18847 -12.33722 -12.18038 -11.95480 -11.89474 -11.79704 -11.67144 -11.35838 -11.30111 -10.89077 -10.80311 -10.62481 -10.53792 -10.46938 -10.28018 -10.07442 -9.90770 -9.52951 -9.02769 -8.64805 -8.23341 -6.75921 -5.91256 -3.36982 0.30228 1.12117 1.47887 2.32141 3.08231 3.15904 3.30053 3.35978 3.36645 3.50154 3.65985 4.12587 4.38759 4.56491 4.78872 5.00197 5.18251 5.22722 5.28564 5.63787 5.72862 5.81657 5.92655 5.96332 6.02590 6.20371 6.31286 6.41936 6.60146 6.76477 6.81255 6.92015 7.00837 7.16135 7.41552 7.65492 7.87054 8.30522 8.57473 9.06849 9.68654 10.25456 11.15985 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.003799 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.005357 B = 7368.292700 C = 7590.967724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.157 3.843 11 C 0.072 3.928 12 N -0.592 5.592 13 C 0.556 3.444 14 O -0.496 6.496 15 C -0.196 4.196 16 C 0.096 3.904 17 N -0.443 5.443 18 H 0.449 0.551 19 N -0.181 5.181 20 C -0.439 4.439 21 S 2.718 3.282 22 N -1.243 6.243 23 O -0.956 6.956 24 O -0.898 6.898 25 C 0.098 3.902 26 C 0.130 3.870 27 H 0.255 0.745 28 H 0.022 0.978 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.199 0.801 33 H 0.421 0.579 34 H 0.420 0.580 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -7.985 -8.604 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.030 3.970 11 C -0.052 4.052 12 N -0.326 5.326 13 C 0.340 3.660 14 O -0.370 6.370 15 C -0.212 4.212 16 C -0.054 4.054 17 N -0.153 5.153 18 H 0.295 0.705 19 N -0.007 5.007 20 C -0.686 4.686 21 S 2.796 3.204 22 N -0.919 5.919 23 O -0.945 6.945 24 O -0.886 6.886 25 C -0.026 4.026 26 C 0.003 3.997 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.216 0.784 33 H 0.252 0.748 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.931 -9.608 -8.941 14.402 hybrid contribution 0.828 2.459 -0.451 2.634 sum -5.103 -7.148 -9.392 12.859 Atomic orbital electron populations 1.69955 1.05268 1.25745 1.54166 1.25078 0.95366 0.98458 1.00678 0.86313 0.78837 0.83052 0.78208 1.21006 1.21627 1.20801 1.19205 0.91953 0.84215 1.42823 0.91435 1.43995 1.32829 1.02230 1.52367 1.21316 0.88774 0.98220 0.88670 1.22942 0.98558 0.84654 0.99059 1.47892 1.30284 1.06461 1.47974 1.17394 0.82269 0.84398 0.81890 1.90967 1.64457 1.30577 1.51007 1.20135 0.96710 1.05552 0.98796 1.23365 0.89970 0.98129 0.93953 1.46506 1.12250 1.37163 1.19358 0.70546 1.77154 1.17399 1.06294 0.99902 1.35173 1.01188 1.16712 1.15571 1.01815 0.74067 0.71916 0.72601 1.53051 1.57353 1.26144 1.55388 1.93598 1.59954 1.60385 1.80582 1.93844 1.45649 1.76149 1.72941 1.22227 0.86283 1.01368 0.92679 1.21335 0.98607 0.86963 0.92802 0.93454 0.95949 0.87808 0.91774 0.91235 0.78413 0.74776 0.75247 0.91875 0.89525 0.91464 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.34 11.01 55.49 0.61 -23.73 16 2 C 0.00 0.06 4.99 -17.43 -0.09 -0.02 16 3 Si 0.91 20.33 29.58 -169.99 -5.03 15.30 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.41 9.59 -15.06 -0.14 -6.56 16 8 H 0.07 1.69 7.87 -52.49 -0.41 1.27 16 9 N -0.59 -13.64 2.96 -171.77 -0.51 -14.14 16 10 C 0.16 3.32 5.53 -3.37 -0.02 3.30 16 11 C 0.07 1.17 5.81 -3.37 -0.02 1.15 16 12 N -0.59 -10.11 2.95 -173.48 -0.51 -10.63 16 13 C 0.56 9.68 7.32 -12.52 -0.09 9.59 16 14 O -0.50 -10.23 13.34 -18.62 -0.25 -10.48 16 15 C -0.20 -2.82 5.16 -105.07 -0.54 -3.37 16 16 C 0.10 0.99 9.65 -16.56 -0.16 0.83 16 17 N -0.44 -4.07 7.29 30.85 0.22 -3.84 16 18 H 0.45 2.17 8.96 -182.72 -1.64 0.53 16 19 N -0.18 -2.34 12.63 31.51 0.40 -1.94 16 20 C -0.44 -6.25 7.30 -16.98 -0.12 -6.38 16 21 S 2.72 38.31 6.40 -107.50 -0.69 37.62 16 22 N -1.24 -12.84 9.52 60.35 0.57 -12.26 16 23 O -0.96 -15.23 18.02 -57.17 -1.03 -16.26 16 24 O -0.90 -16.04 14.54 -66.92 -0.97 -17.01 16 25 C 0.10 1.72 6.60 -3.60 -0.02 1.70 16 26 C 0.13 2.60 6.67 -3.59 -0.02 2.58 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 2.43 5.89 -51.93 -0.31 2.13 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.93 4.75 -51.93 -0.25 0.68 16 32 H 0.20 1.38 7.49 -52.49 -0.39 0.98 16 33 H 0.42 3.29 8.96 -34.47 -0.31 2.98 16 34 H 0.42 4.00 8.96 -34.47 -0.31 3.69 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.51 6.99 -51.93 -0.36 1.15 16 37 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -36.89 326.87 -8.70 -45.59 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.22 Total: 4.03 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.23 Total: 2.82 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: 0.79 Total: -66.54 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -2.25 Total: -43.75 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Atomic # 16 Polarization: 38.31 SS G_CDS: -0.69 Total: 37.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.89 -8.70 -45.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950416789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.746 kcal (2) G-P(sol) polarization free energy of solvation -36.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds