Wall clock time and date at job start Tue Mar 31 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47674 * 270.00370 * 3 2 1 5 5 H 1.48497 * 109.46898 * 30.00598 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00169 * 3 2 1 7 7 C 1.38809 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00001 * 182.75049 * 7 2 1 9 9 N 1.36942 * 120.00048 * 2.74570 * 7 2 1 10 10 C 1.46962 * 120.59323 * 219.25394 * 9 7 2 11 11 C 1.53378 * 108.63596 * 235.24913 * 10 9 7 12 12 N 1.46961 * 108.63298 * 310.57594 * 11 10 9 13 13 C 1.34773 * 120.59569 * 235.20594 * 12 11 10 14 14 O 1.21530 * 120.00190 * 179.97438 * 13 12 11 15 15 C 1.48012 * 120.00206 * 359.95051 * 13 12 11 16 16 C 1.39472 * 119.92390 * 328.18295 * 15 13 12 17 17 C 1.38436 * 120.30792 * 179.97438 * 16 15 13 18 18 C 1.38591 * 119.90329 * 359.97438 * 17 16 15 19 19 C 1.40989 * 120.06136 * 359.97438 * 18 17 16 20 20 C 1.38425 * 119.95761 * 0.02562 * 19 18 17 21 21 C 1.47822 * 105.88976 * 180.26072 * 19 18 17 22 22 O 1.21450 * 125.69098 * 179.71204 * 21 19 18 23 23 N 1.34502 * 108.62522 * 359.62406 * 21 19 18 24 24 C 1.34511 * 111.10525 * 0.38963 * 23 21 19 25 25 O 1.21423 * 125.72592 * 179.72997 * 24 23 21 26 26 C 1.46966 * 118.81194 * 55.47511 * 12 11 10 27 27 C 1.46961 * 120.59423 * 39.27586 * 9 7 2 28 28 H 0.96997 * 119.99890 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.61253 * 115.50166 * 10 9 7 30 30 H 1.09002 * 109.61431 * 354.99123 * 10 9 7 31 31 H 1.08996 * 109.60940 * 190.83332 * 11 10 9 32 32 H 1.09000 * 109.74992 * 70.40124 * 11 10 9 33 33 H 1.08001 * 119.84158 * 359.96533 * 16 15 13 34 34 H 1.08001 * 120.05241 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.19265 * 180.02562 * 20 19 18 36 36 H 0.96999 * 124.44818 * 180.17591 * 23 21 19 37 37 H 1.09005 * 109.60968 * 64.26442 * 26 12 11 38 38 H 1.09001 * 109.61252 * 184.77402 * 26 12 11 39 39 H 1.08994 * 109.61116 * 244.49497 * 27 9 7 40 40 H 1.09005 * 109.60805 * 5.00978 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0893 -1.2027 0.0443 9 7 1.3268 -2.3874 -0.0579 10 6 1.7681 -3.5443 0.7336 11 6 1.9802 -4.7330 -0.2122 12 7 0.7925 -4.8709 -1.0667 13 6 0.1203 -6.0377 -1.1238 14 8 -0.8608 -6.1396 -1.8337 15 6 0.5772 -7.1951 -0.3223 16 6 1.9360 -7.3652 -0.0578 17 6 2.3721 -8.4446 0.6914 18 6 1.4551 -9.3607 1.1820 19 6 0.0801 -9.1937 0.9190 20 6 -0.3542 -8.1138 0.1697 21 6 -0.5995 -10.3256 1.5838 22 8 -1.7969 -10.5289 1.5891 23 7 0.3294 -11.0939 2.1804 24 6 1.5640 -10.5936 1.9944 25 8 2.5949 -11.0724 2.4215 26 6 0.3544 -3.7156 -1.8624 27 6 0.1391 -2.5253 -0.9123 28 1 -0.4850 0.8400 0.0004 29 1 1.0059 -3.7952 1.4712 30 1 2.7047 -3.3067 1.2381 31 1 2.1195 -5.6437 0.3703 32 1 2.8590 -4.5577 -0.8328 33 1 2.6513 -6.6517 -0.4394 34 1 3.4253 -8.5726 0.8934 35 1 -1.4066 -7.9820 -0.0337 36 1 0.1342 -11.9010 2.6818 37 1 1.1196 -3.4664 -2.5976 38 1 -0.5802 -3.9542 -2.3700 39 1 -0.7392 -2.7036 -0.2920 40 1 -0.0002 -1.6146 -1.4949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957376405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:47 Heat of formation + Delta-G solvation = 3.086141 kcal Electronic energy + Delta-G solvation = -27461.084086 eV Core-core repulsion = 23436.698612 eV Total energy + Delta-G solvation = -4024.385473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.60878 -40.38444 -39.02440 -38.19211 -36.94971 -36.04861 -34.14971 -32.09493 -31.60718 -31.27733 -30.11535 -27.29215 -25.67580 -25.12039 -24.04123 -22.79102 -22.65997 -20.90880 -20.75635 -19.23253 -18.46453 -18.24618 -17.09537 -16.80237 -16.55276 -16.09567 -15.82172 -15.30200 -15.26007 -14.93352 -14.68781 -14.40383 -14.40035 -14.23868 -13.78070 -13.52080 -13.38618 -13.10596 -12.89308 -12.52117 -12.33384 -11.54533 -11.18900 -11.04034 -10.95859 -10.86323 -10.82142 -10.80854 -10.67131 -10.33449 -10.20960 -10.01695 -9.79846 -9.60203 -9.35610 -8.63487 -8.44524 -6.65301 -5.94101 -3.53454 -0.48298 0.50431 1.40782 2.15408 2.53306 2.70877 2.97210 3.27922 3.32105 3.35017 3.36335 3.41322 3.85642 4.16349 4.28678 4.36683 4.53701 4.75768 4.85188 5.08341 5.26694 5.33746 5.39796 5.46024 5.57507 5.58657 5.61062 5.71261 5.74222 5.95139 6.02025 6.10681 6.19572 6.25871 6.37855 6.59050 6.70403 6.73810 7.14891 7.31778 7.46019 7.63079 7.66707 8.24645 8.35730 9.05823 9.62887 10.25435 11.12872 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.002787 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.312689 B =10043.355539 C =10596.560529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.016 3.984 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.267 4.267 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.130 3.870 11 C 0.055 3.945 12 N -0.582 5.582 13 C 0.547 3.453 14 O -0.540 6.540 15 C -0.093 4.093 16 C -0.077 4.077 17 C -0.048 4.048 18 C -0.128 4.128 19 C -0.151 4.151 20 C 0.009 3.991 21 C 0.581 3.419 22 O -0.459 6.459 23 N -0.680 5.680 24 C 0.580 3.420 25 O -0.462 6.462 26 C 0.085 3.915 27 C 0.162 3.838 28 H 0.258 0.742 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.430 0.570 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -18.129 1.494 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.185 4.185 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.069 4.069 12 N -0.313 5.313 13 C 0.333 3.667 14 O -0.419 6.419 15 C -0.096 4.096 16 C -0.095 4.095 17 C -0.067 4.067 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.010 4.010 21 C 0.369 3.631 22 O -0.329 6.329 23 N -0.347 5.347 24 C 0.368 3.632 25 O -0.333 6.333 26 C -0.038 4.038 27 C 0.035 3.965 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.272 0.728 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.793 -18.236 1.299 18.672 hybrid contribution 0.314 0.534 0.390 0.732 sum 4.107 -17.702 1.689 18.251 Atomic orbital electron populations 1.69917 1.05475 1.26001 1.52682 1.25436 0.95477 0.98700 0.98849 0.86262 0.79157 0.83288 0.77810 1.21195 1.21509 1.20229 1.19089 0.89982 0.82926 1.47671 0.91864 1.43870 1.31462 1.08670 1.47250 1.21321 0.98848 0.87501 0.92016 1.23341 0.87322 1.01679 0.94530 1.47987 1.28552 1.11083 1.43655 1.18103 0.83610 0.82551 0.82391 1.90781 1.26394 1.83176 1.41556 1.20288 0.93872 0.96335 0.99139 1.22247 0.95723 0.96115 0.95416 1.20755 1.00103 0.91168 0.94675 1.20628 0.94786 0.96836 1.00972 1.20310 0.94175 0.97804 1.03211 1.20739 1.01166 0.88891 0.90222 1.18240 0.85361 0.82210 0.77275 1.90875 1.13122 1.72364 1.56564 1.44421 1.08953 1.28836 1.52462 1.18346 0.82617 0.83673 0.78555 1.90854 1.30740 1.63624 1.48089 1.22751 1.00124 0.86183 0.94779 1.21256 0.88918 0.94667 0.91617 0.93231 0.95755 0.91242 0.88706 0.90777 0.81481 0.83160 0.82971 0.72757 0.91698 0.89849 0.95587 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 11.20 55.49 0.62 -24.10 16 2 C 0.02 0.41 5.18 -17.43 -0.09 0.32 16 3 Si 0.91 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.27 -6.74 9.50 -15.06 -0.14 -6.88 16 8 H 0.06 1.56 7.83 -52.49 -0.41 1.14 16 9 N -0.59 -13.46 2.93 -171.77 -0.50 -13.97 16 10 C 0.13 2.36 6.67 -3.59 -0.02 2.34 16 11 C 0.06 0.76 5.04 -3.60 -0.02 0.74 16 12 N -0.58 -9.37 2.94 -173.26 -0.51 -9.88 16 13 C 0.55 8.58 7.46 -12.26 -0.09 8.49 16 14 O -0.54 -10.19 16.15 5.34 0.09 -10.10 16 15 C -0.09 -1.11 5.54 -104.86 -0.58 -1.69 16 16 C -0.08 -0.69 7.42 -39.05 -0.29 -0.98 16 17 C -0.05 -0.38 10.08 -39.38 -0.40 -0.77 16 18 C -0.13 -1.18 6.41 -104.70 -0.67 -1.85 16 19 C -0.15 -1.56 6.39 -104.87 -0.67 -2.23 16 20 C 0.01 0.11 9.63 -38.94 -0.38 -0.27 16 21 C 0.58 5.94 8.45 -12.46 -0.11 5.84 16 22 O -0.46 -5.93 18.04 5.41 0.10 -5.83 16 23 N -0.68 -5.37 5.76 -13.19 -0.08 -5.45 16 24 C 0.58 5.38 8.47 -12.36 -0.10 5.27 16 25 O -0.46 -5.28 18.04 5.43 0.10 -5.18 16 26 C 0.08 1.55 6.62 -3.37 -0.02 1.53 16 27 C 0.16 3.61 5.42 -3.37 -0.02 3.59 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.10 1.00 3.55 -53.70 -0.19 0.81 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.17 1.25 5.30 -52.49 -0.28 0.97 16 34 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.15 1.81 7.95 -52.49 -0.42 1.39 16 36 H 0.43 2.28 8.96 -40.82 -0.37 1.92 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.54 6.99 -51.93 -0.36 1.17 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 2.39 6.39 -51.93 -0.33 2.06 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -32.11 338.04 -7.73 -39.84 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.02 Total: 0.74 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: -3.60 Total: 13.45 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.47 Total: -53.39 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.28 Total: -21.11 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.11 -7.73 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957376405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.928 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds