Wall clock time and date at job start Tue Mar 31 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46963 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99637 * 3 2 1 6 6 H 1.48496 * 109.47250 * 149.99867 * 3 2 1 7 7 C 1.38815 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99890 * 189.10054 * 7 2 1 9 9 N 1.36938 * 120.00144 * 9.10136 * 7 2 1 10 10 C 1.48146 * 127.83468 * 15.57931 * 9 7 2 11 11 C 1.54397 * 104.61474 * 140.39383 * 10 9 7 12 12 H 1.08997 * 117.61571 * 242.76156 * 11 10 9 13 13 C 1.54281 * 104.95831 * 23.86695 * 11 10 9 14 14 H 1.09002 * 121.81282 * 222.17275 * 13 11 10 15 15 C 1.48141 * 127.83925 * 195.55555 * 9 7 2 16 16 C 1.52997 * 59.72319 * 114.13712 * 13 11 10 17 17 H 1.09000 * 117.44457 * 252.34964 * 16 13 11 18 18 N 1.46503 * 117.40814 * 107.65851 * 16 13 11 19 19 C 1.34779 * 119.99881 * 135.77229 * 18 16 13 20 20 O 1.21282 * 119.99837 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00003 * 180.02562 * 19 18 16 22 22 N 1.46500 * 109.46988 * 179.97438 * 21 19 18 23 23 C 1.46453 * 126.07997 * 85.00741 * 22 21 19 24 24 C 1.53194 * 113.70284 * 178.24559 * 23 22 21 25 25 C 1.55563 * 106.24174 * 27.54377 * 24 23 22 26 26 S 1.67289 * 126.08557 * 264.68700 * 22 21 19 27 27 O 1.42095 * 105.40826 * 274.99721 * 26 22 21 28 28 O 1.42103 * 105.40384 * 45.26494 * 26 22 21 29 29 H 0.97001 * 119.99692 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.41422 * 21.61202 * 10 9 7 31 31 H 1.08997 * 110.41243 * 259.17456 * 10 9 7 32 32 H 1.08991 * 110.40969 * 100.82469 * 15 9 7 33 33 H 1.09001 * 110.40652 * 338.39082 * 15 9 7 34 34 H 0.97003 * 120.00066 * 315.78304 * 18 16 13 35 35 H 1.08994 * 109.47067 * 300.00282 * 21 19 18 36 36 H 1.09004 * 109.46955 * 60.00327 * 21 19 18 37 37 H 1.09007 * 108.64302 * 299.34938 * 23 22 21 38 38 H 1.08996 * 108.64960 * 57.30450 * 23 22 21 39 39 H 1.09002 * 110.10479 * 146.74171 * 24 23 22 40 40 H 1.09003 * 110.09766 * 268.34976 * 24 23 22 41 41 H 1.08999 * 111.36501 * 80.61820 * 25 24 23 42 42 H 1.09003 * 111.36515 * 205.35847 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1485 9 7 1.3386 -2.3807 -0.1865 10 6 -0.0340 -2.5711 -0.7103 11 6 0.0642 -3.8171 -1.6167 12 1 -0.1479 -3.6879 -2.6780 13 6 1.2865 -4.5974 -1.0899 14 1 2.0101 -5.0553 -1.7643 15 6 1.8198 -3.7546 0.0885 16 6 -0.1179 -5.1932 -0.9731 17 1 -0.5678 -5.2281 0.0191 18 7 -0.4510 -6.3131 -1.8569 19 6 -1.1015 -7.3873 -1.3676 20 8 -1.4114 -7.4266 -0.1957 21 6 -1.4436 -8.5396 -2.2765 22 7 -2.1426 -9.5747 -1.5109 23 6 -3.5794 -9.6179 -1.2307 24 6 -4.0153 -10.8540 -0.4377 25 6 -2.7808 -11.2895 0.4026 26 16 -1.4427 -10.9214 -0.8073 27 8 -1.3867 -11.8991 -1.8369 28 8 -0.2726 -10.4431 -0.1581 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3432 -1.7021 -1.2912 31 1 -0.7316 -2.7503 0.1077 32 1 1.4117 -4.1186 1.0313 33 1 2.9093 -3.7784 0.1105 34 1 -0.2033 -6.2815 -2.7943 35 1 -2.0864 -8.1875 -3.0833 36 1 -0.5278 -8.9552 -2.6968 37 1 -3.8510 -8.7270 -0.6644 38 1 -4.1196 -9.6058 -2.1774 39 1 -4.8469 -10.6028 0.2207 40 1 -4.3052 -11.6535 -1.1197 41 1 -2.6819 -10.6862 1.3050 42 1 -2.8178 -12.3524 0.6413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960187000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:35 Heat of formation + Delta-G solvation = -22.322885 kcal Electronic energy + Delta-G solvation = -26006.644979 eV Core-core repulsion = 22116.601639 eV Total energy + Delta-G solvation = -3890.043340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.99 seconds Orbital eigenvalues (eV) -39.88333 -38.47645 -37.56612 -37.03428 -36.12619 -34.44666 -33.50969 -32.59916 -30.33784 -28.25230 -27.13658 -26.34623 -25.41714 -22.51549 -21.96253 -20.61235 -20.27310 -19.28437 -19.16582 -17.65954 -17.38916 -17.07711 -16.83844 -16.15391 -16.03175 -15.47746 -15.01550 -14.76800 -14.67073 -14.24881 -13.75026 -13.60627 -13.48064 -13.20095 -13.14618 -12.73904 -12.35905 -12.27512 -12.20786 -12.19151 -11.96808 -11.52664 -11.49768 -11.33897 -10.99040 -10.83887 -10.83059 -10.39324 -10.26137 -10.16595 -10.12613 -9.73506 -9.26353 -9.07368 -8.72805 -8.31877 -6.86474 -5.79688 -3.13782 -0.10311 2.05170 2.60562 3.11005 3.27842 3.38670 3.42603 3.43895 3.45859 3.87584 4.14820 4.31476 4.43965 4.46880 4.52792 4.66036 4.82716 4.94349 5.06278 5.13093 5.18070 5.28716 5.37304 5.38263 5.40407 5.56362 5.58487 5.84604 5.93167 6.03993 6.16410 6.24643 6.55066 6.72217 6.81950 6.92243 7.34937 7.52837 7.57683 7.71480 8.20660 8.27934 9.11222 9.73791 10.51017 11.34759 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.002257 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.181242 B =12401.938168 C =12610.748457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.180 4.180 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.097 3.903 17 H 0.131 0.869 18 N -0.698 5.698 19 C 0.491 3.509 20 O -0.523 6.523 21 C 0.145 3.855 22 N -0.971 5.971 23 C 0.080 3.920 24 C -0.122 4.122 25 C -0.588 4.588 26 S 2.563 3.437 27 O -0.953 6.953 28 O -0.944 6.944 29 H 0.254 0.746 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.052 0.948 34 H 0.399 0.601 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.145 0.855 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -23.478 -5.822 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.059 3.941 11 C -0.201 4.201 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.028 3.972 16 C -0.009 4.009 17 H 0.148 0.852 18 N -0.348 5.348 19 C 0.275 3.725 20 O -0.397 6.397 21 C 0.016 3.984 22 N -0.810 5.810 23 C -0.046 4.046 24 C -0.161 4.161 25 C -0.719 4.719 26 S 2.659 3.341 27 O -0.943 6.943 28 O -0.933 6.933 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.164 0.836 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.893 -23.609 -5.190 25.756 hybrid contribution -0.079 1.099 -0.292 1.140 sum -8.972 -22.510 -5.481 24.844 Atomic orbital electron populations 1.69903 1.05046 1.25407 1.55855 1.24907 0.95664 0.97989 1.01789 0.86090 0.78696 0.83202 0.77597 1.21534 1.21665 1.20535 1.19014 0.90851 0.82295 1.43246 0.90493 1.45182 1.13336 1.00012 1.73142 1.21061 0.86959 0.92432 0.93646 1.24650 1.02430 0.92537 1.00528 0.87914 1.24362 0.90543 1.02447 1.03037 0.87907 1.21121 0.97261 0.85761 0.93014 1.21830 0.98513 0.84830 0.95714 0.85174 1.45377 1.58662 1.18015 1.12769 1.21225 0.78039 0.83620 0.89595 1.90689 1.52434 1.79657 1.16949 1.20763 0.98185 0.86905 0.92542 1.56593 1.15422 1.39437 1.69554 1.21595 0.81806 0.99917 1.01318 1.22386 0.98057 0.97372 0.98306 1.30751 1.15457 1.11173 1.14500 1.06746 0.75680 0.74610 0.77039 1.93650 1.86374 1.60028 1.54222 1.93655 1.45338 1.78369 1.75978 0.93560 0.89071 0.95700 0.95441 0.92977 0.76753 0.87066 0.87463 0.90092 0.90198 0.87075 0.88707 0.83639 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.87 55.49 0.60 -26.20 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 21.94 29.56 -169.99 -5.03 16.92 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.33 3.38 -168.86 -0.57 -15.90 16 10 C 0.19 4.45 5.70 -2.40 -0.01 4.43 16 11 C -0.18 -3.35 7.06 -89.22 -0.63 -3.98 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 13 C -0.18 -3.30 7.06 -89.22 -0.63 -3.93 16 14 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 15 C 0.16 3.35 7.04 -2.41 -0.02 3.34 16 16 C 0.10 1.64 5.98 -67.93 -0.41 1.23 16 17 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 18 N -0.70 -8.97 5.56 -53.80 -0.30 -9.27 16 19 C 0.49 6.53 7.90 -10.98 -0.09 6.44 16 20 O -0.52 -9.07 16.00 5.56 0.09 -8.99 16 21 C 0.14 1.28 6.72 -5.19 -0.03 1.24 16 22 N -0.97 -8.91 2.82 -115.59 -0.33 -9.24 16 23 C 0.08 0.51 6.84 -3.97 -0.03 0.48 16 24 C -0.12 -0.54 6.61 -25.27 -0.17 -0.70 16 25 C -0.59 -3.37 7.67 38.52 0.30 -3.07 16 26 S 2.56 25.47 6.19 -107.50 -0.67 24.80 16 27 O -0.95 -11.38 18.14 -57.37 -1.04 -12.42 16 28 O -0.94 -13.72 18.04 -57.37 -1.03 -14.76 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.40 3.73 8.83 -40.82 -0.36 3.37 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.15 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -38.67 360.94 -10.92 -49.60 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.13 Total: 1.28 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.97 Total: -1.27 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.59 Total: -60.60 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.99 Total: -36.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 25.47 SS G_CDS: -0.67 Total: 24.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.67 -10.92 -49.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960187000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.272 kcal (2) G-P(sol) polarization free energy of solvation -38.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.99 seconds