Wall clock time and date at job start Tue Mar 31 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99659 * 2 1 4 4 H 1.48504 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47153 * 299.99999 * 3 2 1 6 6 H 1.48497 * 109.47080 * 60.00714 * 3 2 1 7 7 C 1.38816 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99728 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99761 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.91630 * 328.89776 * 10 9 7 12 12 C 1.55157 * 111.00329 * 204.99797 * 10 9 7 13 13 C 1.54323 * 102.94282 * 206.42437 * 12 10 9 14 14 N 1.47022 * 107.26945 * 22.19391 * 13 12 10 15 15 C 1.34784 * 125.64718 * 181.02600 * 14 13 12 16 16 O 1.21603 * 120.00237 * 180.02562 * 15 14 13 17 17 C 1.47434 * 119.99613 * 0.02562 * 15 14 13 18 18 C 1.38042 * 126.41753 * 0.19164 * 17 15 14 19 19 N 1.34258 * 107.41562 * 180.25922 * 18 17 15 20 20 H 0.96993 * 125.75337 * 179.73514 * 19 18 17 21 21 N 1.39932 * 108.49405 * 359.73243 * 19 18 17 22 22 C 1.30453 * 108.89446 * 0.02562 * 21 19 18 23 23 S 1.76199 * 125.98753 * 179.97438 * 22 21 19 24 24 N 1.65607 * 107.21942 * 330.02448 * 23 22 21 25 25 O 1.42097 * 106.40354 * 83.56470 * 23 22 21 26 26 O 1.42107 * 106.40384 * 216.48673 * 23 22 21 27 27 C 1.47425 * 108.70537 * 1.28451 * 14 13 12 28 28 H 0.96996 * 120.00603 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99936 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.72087 * 88.05606 * 12 10 9 31 31 H 1.09000 * 110.87262 * 324.85756 * 12 10 9 32 32 H 1.08998 * 109.88181 * 262.77281 * 13 12 10 33 33 H 1.09002 * 109.88133 * 141.60688 * 13 12 10 34 34 H 1.07999 * 126.29250 * 0.02562 * 18 17 15 35 35 H 0.96996 * 119.99975 * 0.02562 * 24 23 22 36 36 H 0.96995 * 119.99792 * 179.97438 * 24 23 22 37 37 H 1.09004 * 110.36255 * 94.48528 * 27 14 13 38 38 H 1.08999 * 110.36762 * 216.80635 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 1 3.0082 -3.5576 -0.5268 12 6 1.1999 -4.7946 -0.6149 13 6 1.7707 -6.0599 0.0593 14 7 2.4299 -5.6327 1.3021 15 6 3.0705 -6.4414 2.1695 16 8 3.5812 -5.9766 3.1705 17 6 3.1521 -7.8894 1.9047 18 6 2.6265 -8.5541 0.8149 19 7 2.9165 -9.8569 0.9607 20 1 2.6683 -10.5649 0.3460 21 7 3.6371 -10.0210 2.1489 22 6 3.7857 -8.8561 2.7171 23 16 4.6236 -8.5442 4.2355 24 7 4.4608 -9.8997 5.1728 25 8 6.0046 -8.4397 3.9176 26 8 3.8967 -7.5137 4.8906 27 6 2.2688 -4.1744 1.4455 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 1.3342 -4.8393 -1.6956 31 1 0.1471 -4.6654 -0.3637 32 1 2.4961 -6.5362 -0.6004 33 1 0.9626 -6.7547 0.2882 34 1 2.0790 -8.1087 -0.0025 35 1 3.9696 -10.6657 4.8366 36 1 4.8572 -9.9280 6.0575 37 1 1.3991 -3.9477 2.0623 38 1 3.1670 -3.7342 1.8785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969903009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:36 Heat of formation + Delta-G solvation = 2.137144 kcal Electronic energy + Delta-G solvation = -26093.265821 eV Core-core repulsion = 22100.742804 eV Total energy + Delta-G solvation = -3992.523017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97899 -39.49010 -37.31425 -37.01276 -35.78481 -34.24467 -33.44664 -32.51425 -31.94686 -30.73566 -29.72749 -27.48755 -24.68818 -23.74674 -23.25902 -21.95046 -20.72507 -19.95703 -19.40158 -17.95152 -17.73840 -17.37635 -17.26112 -16.68696 -16.20094 -15.86545 -15.70735 -15.21067 -15.11611 -14.45191 -14.06449 -13.94762 -13.54019 -13.13408 -12.81941 -12.51187 -12.27542 -12.25487 -12.07272 -11.97667 -11.87956 -11.62296 -11.46479 -11.13496 -10.84544 -10.78106 -10.75472 -10.68371 -10.35059 -10.05256 -9.85382 -9.73757 -9.40011 -9.03562 -8.38239 -7.09916 -5.85173 -3.15991 0.17720 0.89675 1.16301 2.03983 2.91064 3.12089 3.30898 3.41776 3.44622 3.48755 3.50313 4.03942 4.32535 4.53782 4.62749 4.69332 4.79251 4.98052 5.04184 5.16801 5.36066 5.43895 5.64330 5.70178 5.76846 5.86857 6.06519 6.20730 6.32516 6.35423 6.47014 6.55343 6.61694 6.79661 6.84882 7.66323 7.69581 8.31005 8.33671 9.44679 9.96716 10.31420 11.36837 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002951 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.559516 B = 9485.103564 C =10426.603446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.710 5.710 10 C 0.172 3.828 11 H 0.070 0.930 12 C -0.142 4.142 13 C 0.092 3.908 14 N -0.607 5.607 15 C 0.579 3.421 16 O -0.507 6.507 17 C -0.198 4.198 18 C 0.091 3.909 19 N -0.442 5.442 20 H 0.449 0.551 21 N -0.207 5.207 22 C -0.417 4.417 23 S 2.728 3.272 24 N -1.251 6.251 25 O -0.949 6.949 26 O -0.902 6.902 27 C 0.083 3.917 28 H 0.256 0.744 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.211 0.789 35 H 0.416 0.584 36 H 0.421 0.579 37 H 0.070 0.930 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -26.226 1.217 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.350 5.350 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.181 4.181 13 C -0.031 4.031 14 N -0.341 5.341 15 C 0.366 3.634 16 O -0.382 6.382 17 C -0.214 4.214 18 C -0.060 4.060 19 N -0.151 5.151 20 H 0.295 0.705 21 N -0.033 5.033 22 C -0.665 4.665 23 S 2.805 3.195 24 N -0.927 5.927 25 O -0.937 6.937 26 O -0.889 6.889 27 C -0.042 4.042 28 H 0.066 0.934 29 H 0.222 0.778 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.243 0.757 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.292 -26.077 1.953 26.500 hybrid contribution -0.814 0.445 -0.848 1.257 sum 3.478 -25.632 1.105 25.891 Atomic orbital electron populations 1.69663 1.05183 1.25861 1.57043 1.24774 0.95538 0.97898 1.02282 0.86093 0.78943 0.83796 0.77201 1.20362 1.21817 1.21704 1.19323 0.91218 0.83832 1.43560 0.90775 1.42312 1.05819 0.99404 1.87449 1.21372 0.95248 0.86016 0.91429 0.91199 1.22969 1.01041 0.93824 1.00249 1.22339 0.95991 0.98633 0.86160 1.48253 1.54081 1.09710 1.22061 1.16915 0.79662 0.83748 0.83074 1.90991 1.46383 1.75394 1.25446 1.20064 1.09129 0.95033 0.97209 1.24191 0.97908 0.84173 0.99716 1.46400 1.41317 1.08251 1.19107 0.70453 1.76982 1.10926 1.20287 0.95109 1.35120 1.13656 0.95844 1.21887 1.01669 0.73784 0.72043 0.71956 1.53063 1.72914 1.35195 1.31568 1.93627 1.31305 1.85089 1.83706 1.93751 1.72761 1.51671 1.70760 1.23550 1.02351 0.76308 1.01998 0.93384 0.77843 0.90058 0.90229 0.91486 0.91638 0.77298 0.75726 0.74794 0.91124 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -6.65 9.96 -15.06 -0.15 -6.80 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -16.72 5.24 -51.24 -0.27 -16.99 16 10 C 0.17 3.15 3.73 -65.66 -0.24 2.90 16 11 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 12 C -0.14 -1.88 6.59 -24.90 -0.16 -2.05 16 13 C 0.09 1.00 4.98 -3.06 -0.02 0.98 16 14 N -0.61 -9.41 3.33 -171.64 -0.57 -9.98 16 15 C 0.58 9.88 7.84 -12.51 -0.10 9.78 16 16 O -0.51 -10.68 13.66 -18.58 -0.25 -10.94 16 17 C -0.20 -2.62 6.09 -105.07 -0.64 -3.26 16 18 C 0.09 0.74 10.50 -16.56 -0.17 0.57 16 19 N -0.44 -2.94 7.29 30.85 0.22 -2.71 16 20 H 0.45 0.96 8.96 -182.73 -1.64 -0.67 16 21 N -0.21 -2.03 12.63 31.51 0.40 -1.63 16 22 C -0.42 -5.25 7.22 -16.98 -0.12 -5.37 16 23 S 2.73 35.74 5.96 -107.50 -0.64 35.10 16 24 N -1.25 -9.45 9.55 60.35 0.58 -8.87 16 25 O -0.95 -15.28 18.02 -57.17 -1.03 -16.31 16 26 O -0.90 -15.41 15.00 -66.91 -1.00 -16.42 16 27 C 0.08 1.54 6.61 -2.41 -0.02 1.52 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.39 9.59 7.77 -40.82 -0.32 9.28 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.08 8.01 -51.93 -0.42 0.67 16 32 H 0.07 0.54 6.83 -51.93 -0.35 0.19 16 33 H 0.07 0.53 7.02 -51.93 -0.36 0.17 16 34 H 0.21 0.97 4.42 -52.49 -0.23 0.74 16 35 H 0.42 2.19 8.92 -34.48 -0.31 1.88 16 36 H 0.42 2.26 8.96 -34.47 -0.31 1.95 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -39.89 333.07 -8.74 -48.63 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.17 Total: 6.61 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.72 Total: -2.05 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: 1.08 Total: -66.68 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -2.29 Total: -43.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 35.74 SS G_CDS: -0.64 Total: 35.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -39.89 -8.74 -48.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969903009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.766 kcal (2) G-P(sol) polarization free energy of solvation -39.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds