Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00221 * 2 1 4 4 H 1.48495 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46883 * 300.00249 * 3 2 1 6 6 H 1.48498 * 109.46678 * 59.99994 * 3 2 1 7 7 C 1.38814 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99879 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.91323 * 328.89676 * 10 9 7 12 12 C 1.55160 * 110.99999 * 205.00050 * 10 9 7 13 13 C 1.54331 * 102.93850 * 206.42355 * 12 10 9 14 14 N 1.47018 * 107.27316 * 22.19152 * 13 12 10 15 15 C 1.34772 * 125.64997 * 180.79575 * 14 13 12 16 16 O 1.21528 * 120.00341 * 174.40260 * 15 14 13 17 17 C 1.48012 * 119.99881 * 354.40060 * 15 14 13 18 18 C 1.39469 * 119.92426 * 7.22951 * 17 15 14 19 19 C 1.38444 * 120.30480 * 179.77286 * 18 17 15 20 20 C 1.38581 * 119.90333 * 0.49166 * 19 18 17 21 21 C 1.40998 * 120.06303 * 359.76400 * 20 19 18 22 22 C 1.38423 * 119.95462 * 359.97438 * 21 20 19 23 23 C 1.47832 * 105.88590 * 180.02562 * 21 20 19 24 24 O 1.21454 * 125.68559 * 179.97438 * 23 21 20 25 25 N 1.34504 * 108.62619 * 0.02562 * 23 21 20 26 26 C 1.34509 * 111.10714 * 359.97438 * 25 23 21 27 27 O 1.21428 * 125.72853 * 179.97438 * 26 25 23 28 28 C 1.47429 * 108.70442 * 1.06015 * 14 13 12 29 29 H 0.97004 * 119.99760 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99802 * 359.97438 * 9 7 2 31 31 H 1.08997 * 110.71976 * 88.06028 * 12 10 9 32 32 H 1.08996 * 110.87080 * 324.85319 * 12 10 9 33 33 H 1.09003 * 109.87719 * 262.77179 * 13 12 10 34 34 H 1.08993 * 110.00904 * 141.68419 * 13 12 10 35 35 H 1.07998 * 119.84553 * 0.02636 * 18 17 15 36 36 H 1.08008 * 120.04362 * 180.25539 * 19 18 17 37 37 H 1.08003 * 120.18764 * 179.97438 * 22 21 20 38 38 H 0.96993 * 124.45030 * 180.02562 * 25 23 21 39 39 H 1.08999 * 110.36605 * 94.70404 * 28 14 13 40 40 H 1.08997 * 110.36991 * 217.03526 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0080 -3.5576 -0.5268 12 6 1.1996 -4.7945 -0.6150 13 6 1.7705 -6.0600 0.0592 14 7 2.4297 -5.6329 1.3020 15 6 3.0665 -6.4421 2.1715 16 8 3.6644 -5.9676 3.1171 17 6 3.0375 -7.9088 1.9748 18 6 2.4825 -8.4441 0.8127 19 6 2.4555 -9.8146 0.6184 20 6 2.9729 -10.6599 1.5870 21 6 3.5306 -10.1252 2.7664 22 6 3.5616 -8.7544 2.9565 23 6 3.9790 -11.2860 3.5644 24 8 4.5149 -11.2329 4.6531 25 7 3.6958 -12.4108 2.8833 26 6 3.1025 -12.1297 1.7093 27 8 2.7355 -12.9446 0.8873 28 6 2.2733 -4.1737 1.4428 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.3341 -4.8392 -1.6957 32 1 0.1469 -4.6652 -0.3637 33 1 2.4958 -6.5362 -0.6005 34 1 0.9641 -6.7567 0.2878 35 1 2.0755 -7.7862 0.0590 36 1 2.0284 -10.2244 -0.2850 37 1 3.9875 -8.3408 3.8587 38 1 3.8928 -13.3069 3.1977 39 1 1.4060 -3.9431 2.0614 40 1 3.1741 -3.7353 1.8722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970517870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = -7.342372 kcal Electronic energy + Delta-G solvation = -26654.999522 eV Core-core repulsion = 22630.161835 eV Total energy + Delta-G solvation = -4024.837688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.69829 -40.52393 -39.11784 -38.39660 -37.45178 -36.12961 -34.40753 -32.31445 -31.68533 -31.28452 -29.89102 -27.96386 -25.99864 -25.00622 -24.09836 -23.39846 -22.19713 -20.93534 -20.47705 -19.87030 -18.55540 -18.37109 -17.50899 -16.90296 -16.74953 -16.43371 -16.13727 -15.82059 -15.22711 -14.97155 -14.71045 -14.52203 -14.49638 -14.36550 -13.90178 -13.62323 -13.33689 -13.09729 -12.77251 -12.70111 -12.39206 -12.28819 -11.36275 -11.23000 -11.11995 -10.95366 -10.91201 -10.87589 -10.76278 -10.41880 -10.11046 -10.06338 -9.84790 -9.75235 -9.71963 -9.11677 -8.59593 -7.17962 -5.92112 -3.23447 -0.59782 0.38499 1.29084 2.06080 2.43601 2.59328 2.76164 3.20675 3.31889 3.36314 3.43244 3.44665 3.75012 4.04985 4.12889 4.41441 4.49108 4.63595 4.66199 4.76500 4.94029 5.10066 5.21467 5.24396 5.34617 5.38696 5.50682 5.54426 5.57680 5.63997 5.77172 5.87813 5.97359 6.02634 6.10473 6.19221 6.31884 6.46799 6.64351 6.72565 7.22423 7.46756 7.58876 8.02671 8.25147 9.37622 9.89052 10.23538 11.29690 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.030321 B = 0.002256 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.217668 B =12409.421749 C =13130.025196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.710 5.710 10 C 0.172 3.828 11 H 0.070 0.930 12 C -0.144 4.144 13 C 0.087 3.913 14 N -0.603 5.603 15 C 0.564 3.436 16 O -0.530 6.530 17 C -0.097 4.097 18 C -0.102 4.102 19 C -0.048 4.048 20 C -0.127 4.127 21 C -0.153 4.153 22 C 0.011 3.989 23 C 0.581 3.419 24 O -0.458 6.458 25 N -0.680 5.680 26 C 0.579 3.421 27 O -0.461 6.461 28 C 0.079 3.921 29 H 0.257 0.743 30 H 0.388 0.612 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.430 0.570 39 H 0.072 0.928 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -23.884 -0.084 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.060 3.940 11 H 0.088 0.912 12 C -0.183 4.183 13 C -0.035 4.035 14 N -0.336 5.336 15 C 0.352 3.648 16 O -0.407 6.407 17 C -0.101 4.101 18 C -0.120 4.120 19 C -0.066 4.066 20 C -0.131 4.131 21 C -0.156 4.156 22 C -0.008 4.008 23 C 0.369 3.631 24 O -0.328 6.328 25 N -0.346 5.346 26 C 0.367 3.633 27 O -0.332 6.332 28 C -0.045 4.045 29 H 0.067 0.933 30 H 0.222 0.778 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.199 0.801 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.273 0.727 39 H 0.090 0.910 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.153 -23.767 0.567 24.134 hybrid contribution 0.178 0.316 0.295 0.467 sum 4.331 -23.452 0.862 23.864 Atomic orbital electron populations 1.69663 1.05187 1.25950 1.56784 1.24783 0.95545 0.97936 1.02146 0.86097 0.78903 0.83767 0.77270 1.20383 1.21721 1.21695 1.19305 0.91185 0.83809 1.43874 0.90797 1.42313 1.05843 0.99368 1.87394 1.21317 0.95351 0.86122 0.91246 0.91189 1.23034 1.01120 0.93647 1.00526 1.22566 0.96490 0.98532 0.85950 1.48417 1.53257 1.09917 1.21962 1.17741 0.79568 0.85091 0.82441 1.90817 1.42884 1.76211 1.30831 1.20246 1.00305 0.94093 0.95420 1.23305 0.94947 0.95861 0.97858 1.20817 0.95892 0.91909 0.98025 1.20703 1.02234 0.93394 0.96757 1.20328 1.04621 0.94193 0.96507 1.20803 0.91916 0.89537 0.98560 1.18242 0.76924 0.83718 0.84252 1.90881 1.37485 1.86285 1.18180 1.44423 1.57926 1.11563 1.20734 1.18361 0.75743 0.88708 0.80492 1.90860 1.44979 1.54874 1.42495 1.23584 1.02305 0.76172 1.02483 0.93308 0.77792 0.89783 0.90105 0.90378 0.90533 0.80056 0.83240 0.82705 0.72712 0.91010 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -15.94 5.24 -51.34 -0.27 -16.21 16 10 C 0.17 2.93 3.71 -65.78 -0.24 2.68 16 11 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 12 C -0.14 -1.75 6.60 -24.89 -0.16 -1.92 16 13 C 0.09 0.83 4.87 -3.06 -0.01 0.81 16 14 N -0.60 -8.04 3.33 -177.22 -0.59 -8.62 16 15 C 0.56 7.89 7.81 -12.26 -0.10 7.80 16 16 O -0.53 -9.45 16.59 5.34 0.09 -9.36 16 17 C -0.10 -1.01 5.88 -104.86 -0.62 -1.63 16 18 C -0.10 -0.75 8.61 -39.05 -0.34 -1.09 16 19 C -0.05 -0.32 10.08 -39.38 -0.40 -0.71 16 20 C -0.13 -1.03 6.41 -104.70 -0.67 -1.70 16 21 C -0.15 -1.40 6.39 -104.86 -0.67 -2.07 16 22 C 0.01 0.12 9.63 -38.94 -0.37 -0.26 16 23 C 0.58 5.37 8.45 -12.46 -0.11 5.26 16 24 O -0.46 -5.50 18.04 5.41 0.10 -5.40 16 25 N -0.68 -4.75 5.76 -13.18 -0.08 -4.83 16 26 C 0.58 4.82 8.47 -12.36 -0.10 4.71 16 27 O -0.46 -4.86 18.04 5.43 0.10 -4.76 16 28 C 0.08 1.32 6.63 -2.53 -0.02 1.31 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.39 9.22 7.77 -40.82 -0.32 8.91 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 33 H 0.08 0.55 6.74 -51.93 -0.35 0.20 16 34 H 0.08 0.55 6.73 -51.93 -0.35 0.20 16 35 H 0.18 1.03 2.69 -59.78 -0.16 0.87 16 36 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.16 1.67 7.67 -52.48 -0.40 1.27 16 38 H 0.43 1.93 8.96 -40.82 -0.37 1.56 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -33.04 345.04 -7.82 -40.86 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.01 Total: 6.20 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -4.06 Total: 6.28 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.21 Total: -55.43 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.28 Total: -19.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.04 -7.82 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970517870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.516 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds