Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99504 * 2 1 4 4 H 1.48503 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47261 * 299.99641 * 3 2 1 6 6 H 1.48495 * 109.47323 * 60.00084 * 3 2 1 7 7 C 1.38811 * 120.00530 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 164.48036 * 7 2 1 9 9 N 1.36934 * 119.99561 * 344.47378 * 7 2 1 10 10 C 1.47102 * 121.51795 * 336.19250 * 9 7 2 11 11 C 1.50323 * 109.11015 * 223.15896 * 10 9 7 12 12 C 1.29450 * 123.64978 * 348.53830 * 11 10 9 13 13 C 1.50696 * 117.69681 * 181.13761 * 12 11 10 14 14 N 1.46500 * 109.47420 * 95.00167 * 13 12 11 15 15 C 1.34773 * 120.00521 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00190 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.34989 * 318.25330 * 17 15 14 19 19 C 1.54062 * 109.35975 * 77.90345 * 17 15 14 20 20 C 1.55608 * 104.29895 * 165.38140 * 19 17 15 21 21 S 1.83448 * 100.72069 * 322.07925 * 20 19 17 22 22 O 1.42097 * 111.25174 * 270.72597 * 21 20 19 23 23 O 1.42100 * 111.35904 * 131.51125 * 21 20 19 24 24 N 1.47068 * 109.35403 * 198.53918 * 17 15 14 25 25 C 1.49971 * 124.61258 * 1.16182 * 12 11 10 26 26 C 1.47346 * 121.37164 * 155.99637 * 9 7 2 27 27 H 0.96998 * 119.99963 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.72080 * 103.16518 * 10 9 7 29 29 H 1.08999 * 109.38395 * 342.94872 * 10 9 7 30 30 H 1.07995 * 118.17881 * 168.81628 * 11 10 9 31 31 H 1.09003 * 109.47330 * 215.00027 * 13 12 11 32 32 H 1.09002 * 109.47067 * 335.00015 * 13 12 11 33 33 H 0.97001 * 119.99405 * 359.97438 * 14 13 12 34 34 H 1.09010 * 110.46486 * 284.08190 * 19 17 15 35 35 H 1.08998 * 110.47108 * 46.67552 * 19 17 15 36 36 H 1.08999 * 111.16335 * 204.21539 * 20 19 17 37 37 H 1.08999 * 111.20121 * 79.96163 * 20 19 17 38 38 H 0.96995 * 126.30254 * 30.83135 * 24 17 15 39 39 H 1.09000 * 109.31772 * 101.26337 * 25 12 11 40 40 H 1.09004 * 109.31847 * 220.88747 * 25 12 11 41 41 H 1.08999 * 109.77792 * 358.61459 * 26 9 7 42 42 H 1.09003 * 109.81983 * 237.84213 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2497 9 7 1.3632 -2.3662 0.3185 10 6 0.1416 -2.3678 1.1380 11 6 0.2256 -3.4812 2.1445 12 6 1.1210 -4.4154 2.1076 13 6 1.0648 -5.4818 3.1709 14 7 0.3205 -6.6376 2.6646 15 6 0.1411 -7.7195 3.4479 16 8 0.5964 -7.7365 4.5719 17 6 -0.6251 -8.9081 2.9272 18 1 -1.4979 -8.5611 2.3741 19 6 0.2802 -9.7277 1.9880 20 6 -0.4616 -11.0862 1.8279 21 16 -1.1135 -11.3212 3.5265 22 8 -0.1824 -12.0169 4.3438 23 8 -2.4926 -11.6634 3.5088 24 7 -1.0637 -9.7390 4.0587 25 6 2.2107 -4.5109 1.0817 26 6 1.8592 -3.6722 -0.1500 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7292 -2.5185 0.5000 29 1 0.0530 -1.4135 1.6572 30 1 -0.5042 -3.5056 2.9401 31 1 2.0777 -5.7881 3.4322 32 1 0.5651 -5.0869 4.0555 33 1 -0.0439 -6.6238 1.7657 34 1 0.3775 -9.2305 1.0227 35 1 1.2604 -9.8797 2.4400 36 1 0.2310 -11.8834 1.5583 37 1 -1.2716 -11.0099 1.1025 38 1 -1.2841 -9.4256 4.9497 39 1 3.1437 -4.1466 1.5116 40 1 2.3339 -5.5518 0.7823 41 1 2.7475 -3.5302 -0.7654 42 1 1.0853 -4.1749 -0.7301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001456527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = -56.821052 kcal Electronic energy + Delta-G solvation = -25846.387337 eV Core-core repulsion = 21954.848044 eV Total energy + Delta-G solvation = -3891.539293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.31790 -38.03827 -37.41624 -36.84553 -36.22691 -35.11677 -33.04718 -32.20486 -31.03599 -29.85994 -28.16989 -26.38557 -24.25721 -23.18029 -22.78390 -21.22279 -20.77966 -19.98434 -18.54765 -17.77194 -17.68882 -16.97694 -16.21416 -16.01464 -15.70239 -15.51715 -15.17818 -15.01494 -14.54136 -14.19836 -13.99293 -13.86743 -13.63266 -13.51539 -13.23742 -12.78907 -12.51368 -12.38968 -12.35403 -12.33313 -12.13513 -12.02093 -11.66508 -11.47184 -11.06801 -10.99593 -10.82019 -10.53549 -10.38889 -10.34973 -9.91421 -9.84119 -9.68039 -9.18466 -8.77435 -8.17742 -6.84419 -5.88265 -3.27195 -0.20736 2.04004 2.30614 2.46792 3.16036 3.18243 3.32407 3.40649 3.42276 3.50452 3.80464 3.94933 4.26752 4.39834 4.42301 4.68640 4.79221 4.92428 5.00581 5.14615 5.19394 5.23405 5.30818 5.47704 5.69007 5.80944 5.95095 6.04024 6.21615 6.24933 6.40433 6.62256 6.67583 6.75722 7.04670 7.14520 7.20117 7.34667 7.63379 7.73082 7.96274 8.29103 9.10682 9.73312 10.30819 11.22263 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.036666 B = 0.002153 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.469929 B =12999.409250 C =13052.745647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.192 3.808 11 C -0.121 4.121 12 C -0.169 4.169 13 C 0.157 3.843 14 N -0.715 5.715 15 C 0.510 3.490 16 O -0.527 6.527 17 C 0.094 3.906 18 H 0.109 0.891 19 C -0.120 4.120 20 C -0.595 4.595 21 S 2.579 3.421 22 O -0.954 6.954 23 O -0.955 6.955 24 N -1.083 6.083 25 C -0.090 4.090 26 C 0.143 3.857 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.440 0.560 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -20.381 1.818 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.067 3.933 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.034 3.966 14 N -0.367 5.367 15 C 0.293 3.707 16 O -0.402 6.402 17 C -0.018 4.018 18 H 0.127 0.873 19 C -0.159 4.159 20 C -0.726 4.726 21 S 2.673 3.327 22 O -0.943 6.943 23 O -0.945 6.945 24 N -0.850 5.850 25 C -0.129 4.129 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.281 0.719 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.079 -21.078 3.094 21.406 hybrid contribution 0.326 1.570 -0.481 1.674 sum -1.753 -19.508 2.613 19.761 Atomic orbital electron populations 1.70004 1.05195 1.25514 1.54763 1.24993 0.95413 0.98365 1.01135 0.86179 0.79262 0.83786 0.77300 1.20287 1.21711 1.21552 1.19217 0.92282 0.84302 1.41762 0.91255 1.44164 1.29014 1.01215 1.57432 1.19792 0.88769 0.94939 0.89757 1.23313 0.95705 0.96555 0.98568 1.20474 1.00142 0.97292 0.99071 1.20509 0.96155 0.84226 0.95683 1.46218 1.56250 1.16108 1.18089 1.20288 0.80756 0.83606 0.86046 1.90744 1.49193 1.81234 1.19063 1.21654 0.98664 0.93002 0.88480 0.87306 1.22651 0.99199 0.92343 1.01743 1.30853 1.12533 1.06091 1.23129 1.06145 0.75287 0.73188 0.78109 1.93644 1.64585 1.71796 1.64313 1.93644 1.32513 1.81950 1.86362 1.54993 1.84904 1.25444 1.19683 1.20757 0.96652 0.98973 0.96497 1.20959 0.97381 0.87241 0.92762 0.93590 0.94007 0.88791 0.88752 0.91343 0.91466 0.76200 0.86006 0.87885 0.83512 0.83500 0.71898 0.91699 0.92886 0.92440 0.95953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.25 11.07 55.49 0.61 -24.63 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 3 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.46 9.71 -15.06 -0.15 -6.61 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -13.97 3.01 -173.59 -0.52 -14.49 16 10 C 0.19 4.25 5.25 -5.05 -0.03 4.22 16 11 C -0.12 -2.08 9.47 -35.78 -0.34 -2.42 16 12 C -0.17 -2.55 5.22 -100.99 -0.53 -3.08 16 13 C 0.16 2.01 5.66 -5.20 -0.03 1.98 16 14 N -0.71 -7.14 5.55 -61.47 -0.34 -7.49 16 15 C 0.51 5.37 7.06 -10.99 -0.08 5.29 16 16 O -0.53 -7.76 16.38 5.55 0.09 -7.66 16 17 C 0.09 0.65 3.41 -68.22 -0.23 0.41 16 18 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 19 C -0.12 -0.53 6.09 -24.79 -0.15 -0.68 16 20 C -0.60 -2.06 7.51 38.55 0.29 -1.77 16 21 S 2.58 20.33 6.49 -107.50 -0.70 19.64 16 22 O -0.95 -11.37 18.13 -57.43 -1.04 -12.41 16 23 O -0.96 -10.59 18.13 -57.43 -1.04 -11.63 16 24 N -1.08 -8.93 6.31 -5.08 -0.03 -8.96 16 25 C -0.09 -1.38 5.94 -28.18 -0.17 -1.55 16 26 C 0.14 2.69 6.57 -3.53 -0.02 2.67 16 27 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 2.36 6.40 -51.93 -0.33 2.03 16 30 H 0.09 1.46 7.73 -52.49 -0.41 1.05 16 31 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 33 H 0.40 3.14 8.46 -40.82 -0.35 2.79 16 34 H 0.12 0.26 8.14 -51.92 -0.42 -0.17 16 35 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.15 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.15 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.44 3.77 8.72 -40.34 -0.35 3.41 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.06 7.96 -51.93 -0.41 0.65 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -36.59 357.49 -10.16 -46.75 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.03 Total: 1.11 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.28 Total: -55.57 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.99 Total: -31.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 20.33 SS G_CDS: -0.70 Total: 19.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.59 -10.16 -46.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001456527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.075 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds