Wall clock time and date at job start Tue Mar 31 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48497 * 109.47079 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47127 * 120.00212 * 3 2 1 6 6 H 1.48508 * 109.47128 * 240.00309 * 3 2 1 7 7 C 1.38813 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00191 * 154.33955 * 7 2 1 9 9 N 1.36940 * 119.99753 * 334.34526 * 7 2 1 10 10 C 1.47002 * 121.37656 * 335.50424 * 9 7 2 11 11 C 1.50324 * 109.16764 * 222.95328 * 10 9 7 12 12 C 1.29453 * 123.64641 * 349.02198 * 11 10 9 13 13 C 1.50701 * 117.69042 * 180.88192 * 12 11 10 14 14 N 1.46502 * 109.47317 * 94.99936 * 13 12 11 15 15 C 1.34774 * 120.00024 * 180.02562 * 14 13 12 16 16 O 1.21278 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00044 * 179.97438 * 15 14 13 18 18 H 1.09003 * 109.34470 * 39.70908 * 17 15 14 19 19 C 1.54063 * 109.35585 * 280.00132 * 17 15 14 20 20 C 1.55605 * 104.29467 * 194.61542 * 19 17 15 21 21 S 1.83455 * 100.72010 * 37.91972 * 20 19 17 22 22 O 1.42100 * 111.25089 * 89.27838 * 21 20 19 23 23 O 1.42103 * 111.24422 * 228.52028 * 21 20 19 24 24 N 1.47065 * 109.35677 * 159.36057 * 17 15 14 25 25 C 1.49963 * 124.61614 * 0.85954 * 12 11 10 26 26 C 1.47338 * 121.37147 * 155.22610 * 9 7 2 27 27 H 0.97001 * 119.99995 * 174.14781 * 1 2 3 28 28 H 1.09013 * 109.51994 * 342.85546 * 10 9 7 29 29 H 1.08996 * 109.52531 * 103.04217 * 10 9 7 30 30 H 1.07997 * 118.17220 * 169.04189 * 11 10 9 31 31 H 1.09003 * 109.47378 * 214.99985 * 13 12 11 32 32 H 1.09000 * 109.46983 * 334.99832 * 13 12 11 33 33 H 0.96997 * 119.99407 * 359.97438 * 14 13 12 34 34 H 1.08998 * 110.46953 * 313.32001 * 19 17 15 35 35 H 1.09001 * 110.47181 * 75.78470 * 19 17 15 36 36 H 1.09004 * 111.16736 * 155.78076 * 20 19 17 37 37 H 1.09004 * 111.16903 * 280.00850 * 20 19 17 38 38 H 0.96996 * 126.30106 * 329.17368 * 24 17 15 39 39 H 1.08997 * 109.31840 * 101.28822 * 25 12 11 40 40 H 1.09001 * 109.31488 * 220.71705 * 25 12 11 41 41 H 1.08998 * 109.77719 * 237.80181 * 26 9 7 42 42 H 1.08998 * 109.78451 * 358.61676 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0104 -1.2481 -0.4056 9 7 1.4269 -2.3298 0.5124 10 6 0.3556 -2.2486 1.5157 11 6 0.5995 -3.2789 2.5828 12 6 1.4817 -4.2209 2.4820 13 6 1.5998 -5.1951 3.6257 14 7 0.7893 -6.3821 3.3419 15 6 0.7415 -7.3937 4.2311 16 8 1.3689 -7.3213 5.2664 17 6 -0.0927 -8.6145 3.9394 18 1 0.0027 -8.8735 2.8849 19 6 -1.5692 -8.3124 4.2593 20 6 -2.2497 -9.7114 4.2902 21 16 -0.9332 -10.7138 5.0825 22 8 -1.0627 -10.7079 6.4976 23 8 -0.6922 -11.9122 4.3580 24 7 0.3830 -9.7376 4.7610 25 6 2.3940 -4.4115 1.3071 26 6 1.8429 -3.6745 0.0770 27 1 -0.4850 -0.8357 -0.0857 28 1 0.3504 -1.2547 1.9635 29 1 -0.6057 -2.4390 1.0385 30 1 0.0055 -3.2307 3.4835 31 1 2.6427 -5.4879 3.7474 32 1 1.2454 -4.7238 4.5424 33 1 0.2866 -6.4395 2.5144 34 1 -1.6568 -7.8244 5.2300 35 1 -2.0085 -7.6898 3.4798 36 1 -3.1533 -9.6962 4.8996 37 1 -2.4636 -10.0674 3.2824 38 1 1.2938 -9.8847 5.0605 39 1 3.3822 -4.0214 1.5510 40 1 2.4748 -5.4750 1.0821 41 1 0.9853 -4.2136 -0.3254 42 1 2.6182 -3.5923 -0.6847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001456528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:53 Heat of formation + Delta-G solvation = -58.888988 kcal Electronic energy + Delta-G solvation = -25884.876398 eV Core-core repulsion = 21993.247432 eV Total energy + Delta-G solvation = -3891.628965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.38078 -38.20418 -37.44958 -36.90946 -36.25465 -35.28391 -33.24385 -32.24586 -31.06789 -29.89839 -28.14724 -26.35865 -24.23978 -23.15426 -22.93392 -21.25812 -20.84759 -20.02006 -18.58875 -17.99396 -17.76891 -17.11475 -16.32350 -16.26723 -15.99436 -15.47197 -15.21962 -14.89399 -14.56870 -14.12139 -14.08410 -13.90046 -13.78826 -13.62875 -13.24907 -13.00291 -12.55868 -12.51910 -12.41613 -12.36311 -12.28153 -12.05212 -11.84328 -11.59091 -11.09399 -10.94795 -10.75092 -10.59256 -10.45239 -10.10616 -10.06925 -9.86292 -9.49183 -9.26110 -8.63206 -8.31820 -7.03969 -6.16195 -3.29780 -0.23398 1.98655 2.23901 2.35845 3.10226 3.12895 3.45094 3.45405 3.49093 3.66549 3.77607 3.91998 4.22531 4.35078 4.52115 4.64755 4.74904 4.87540 4.90779 5.09374 5.12189 5.16407 5.17171 5.44549 5.57743 5.71335 5.83597 5.92252 6.08844 6.13356 6.24711 6.50862 6.54629 6.62929 6.75477 6.75925 6.99905 7.25824 7.37938 7.86817 7.89652 8.46388 8.98642 9.74100 10.18667 11.13369 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.002183 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.132887 B =12824.202419 C =12955.574883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.347 4.347 8 H 0.059 0.941 9 N -0.600 5.600 10 C 0.173 3.827 11 C -0.122 4.122 12 C -0.158 4.158 13 C 0.156 3.844 14 N -0.716 5.716 15 C 0.511 3.489 16 O -0.525 6.525 17 C 0.095 3.905 18 H 0.109 0.891 19 C -0.120 4.120 20 C -0.595 4.595 21 S 2.579 3.421 22 O -0.953 6.953 23 O -0.955 6.955 24 N -1.083 6.083 25 C -0.092 4.092 26 C 0.146 3.854 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.403 0.597 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.439 0.561 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -18.685 6.351 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.226 4.226 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.476 4.476 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.047 3.953 11 C -0.143 4.143 12 C -0.158 4.158 13 C 0.033 3.967 14 N -0.368 5.368 15 C 0.293 3.707 16 O -0.401 6.401 17 C -0.017 4.017 18 H 0.126 0.874 19 C -0.160 4.160 20 C -0.726 4.726 21 S 2.673 3.327 22 O -0.943 6.943 23 O -0.944 6.944 24 N -0.850 5.850 25 C -0.131 4.131 26 C 0.019 3.981 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.281 0.719 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.566 -17.831 7.645 19.931 hybrid contribution 0.203 -1.125 -0.693 1.337 sum -4.363 -18.955 6.952 20.656 Atomic orbital electron populations 1.70819 1.06581 1.30182 1.48201 1.25828 0.96489 1.01404 0.98867 0.83548 0.74849 0.76072 0.76263 1.21051 1.22040 1.21939 1.19951 0.98022 0.88376 1.41247 0.92306 1.44203 1.43158 1.01184 1.43926 1.19916 0.91096 0.96648 0.87623 1.23038 0.95939 0.96068 0.99265 1.20527 1.00526 0.97867 0.96908 1.20509 0.95336 0.84031 0.96781 1.46194 1.49708 1.18432 1.22426 1.20300 0.82339 0.83865 0.84157 1.90748 1.44153 1.79764 1.25392 1.21650 0.94097 0.88132 0.97831 0.87363 1.22646 0.90225 0.96023 1.07084 1.30857 1.16427 1.10076 1.15230 1.06134 0.76900 0.74374 0.75272 1.93648 1.85244 1.86410 1.28952 1.93646 1.83192 1.43522 1.74087 1.54999 1.24700 1.36965 1.68378 1.20857 0.98224 0.99050 0.94970 1.21056 0.97032 0.86634 0.93347 0.92119 0.89669 0.94656 0.88405 0.91191 0.91269 0.76208 0.87863 0.86026 0.83485 0.83500 0.71928 0.91463 0.92680 0.96051 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 12.55 55.49 0.70 -25.63 16 2 C -0.02 -0.66 4.73 -17.43 -0.08 -0.74 16 3 Si 1.06 24.45 29.99 -169.99 -5.10 19.35 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.30 9.59 -15.06 -0.14 -9.44 16 8 H 0.06 1.59 7.95 -52.49 -0.42 1.17 16 9 N -0.60 -14.12 2.88 -173.35 -0.50 -14.62 16 10 C 0.17 3.71 4.89 -5.10 -0.02 3.68 16 11 C -0.12 -2.05 9.47 -35.78 -0.34 -2.39 16 12 C -0.16 -2.35 5.22 -100.99 -0.53 -2.88 16 13 C 0.16 1.96 5.66 -5.19 -0.03 1.93 16 14 N -0.72 -6.97 5.55 -61.47 -0.34 -7.31 16 15 C 0.51 5.26 7.05 -10.99 -0.08 5.18 16 16 O -0.53 -7.61 16.42 5.56 0.09 -7.52 16 17 C 0.10 0.64 3.41 -68.22 -0.23 0.40 16 18 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 19 C -0.12 -0.54 6.09 -24.79 -0.15 -0.69 16 20 C -0.60 -2.07 7.51 38.54 0.29 -1.79 16 21 S 2.58 20.04 6.49 -107.50 -0.70 19.34 16 22 O -0.95 -11.30 18.13 -57.41 -1.04 -12.34 16 23 O -0.96 -10.41 18.14 -57.41 -1.04 -11.45 16 24 N -1.08 -8.68 6.31 -5.08 -0.03 -8.72 16 25 C -0.09 -1.44 5.96 -27.91 -0.17 -1.60 16 26 C 0.15 2.78 6.61 -3.26 -0.02 2.76 16 27 H 0.27 7.64 6.38 -40.82 -0.26 7.38 16 28 H 0.09 2.08 6.77 -51.92 -0.35 1.73 16 29 H 0.04 0.78 7.40 -51.93 -0.38 0.40 16 30 H 0.10 1.43 7.73 -52.49 -0.41 1.03 16 31 H 0.07 0.93 8.11 -51.93 -0.42 0.50 16 32 H 0.07 0.91 7.78 -51.93 -0.40 0.51 16 33 H 0.40 3.04 8.46 -40.82 -0.35 2.69 16 34 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.15 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.15 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.44 3.62 8.76 -40.34 -0.35 3.27 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -37.52 356.38 -10.03 -47.55 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.93 Total: 1.54 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.51 Total: -5.57 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.18 Total: -56.27 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.99 Total: -31.31 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.35 kcal Atomic # 16 Polarization: 20.04 SS G_CDS: -0.70 Total: 19.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.52 -10.03 -47.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001456528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.340 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds