Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48497 * 109.47079 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47127 * 120.00212 * 3 2 1 6 6 H 1.48508 * 109.47128 * 240.00309 * 3 2 1 7 7 C 1.38813 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00191 * 154.33955 * 7 2 1 9 9 N 1.36940 * 119.99753 * 334.34526 * 7 2 1 10 10 C 1.47002 * 121.37656 * 335.50424 * 9 7 2 11 11 C 1.50324 * 109.16764 * 222.95328 * 10 9 7 12 12 C 1.29453 * 123.64641 * 349.02198 * 11 10 9 13 13 C 1.50701 * 117.69042 * 180.88192 * 12 11 10 14 14 N 1.46502 * 109.47317 * 94.99936 * 13 12 11 15 15 C 1.34774 * 120.00024 * 180.02562 * 14 13 12 16 16 O 1.21278 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00044 * 179.97438 * 15 14 13 18 18 H 1.09003 * 109.34470 * 39.70908 * 17 15 14 19 19 C 1.54063 * 109.35585 * 280.00132 * 17 15 14 20 20 C 1.55605 * 104.29467 * 194.61542 * 19 17 15 21 21 S 1.83455 * 100.72010 * 37.91972 * 20 19 17 22 22 O 1.42100 * 111.25089 * 89.27838 * 21 20 19 23 23 O 1.42103 * 111.24422 * 228.52028 * 21 20 19 24 24 N 1.47065 * 109.35677 * 159.36057 * 17 15 14 25 25 C 1.49963 * 124.61614 * 0.85954 * 12 11 10 26 26 C 1.47338 * 121.37147 * 155.22610 * 9 7 2 27 27 H 0.97001 * 119.99995 * 174.14781 * 1 2 3 28 28 H 1.09013 * 109.51994 * 342.85546 * 10 9 7 29 29 H 1.08996 * 109.52531 * 103.04217 * 10 9 7 30 30 H 1.07997 * 118.17220 * 169.04189 * 11 10 9 31 31 H 1.09003 * 109.47378 * 214.99985 * 13 12 11 32 32 H 1.09000 * 109.46983 * 334.99832 * 13 12 11 33 33 H 0.96997 * 119.99407 * 359.97438 * 14 13 12 34 34 H 1.08998 * 110.46953 * 313.32001 * 19 17 15 35 35 H 1.09001 * 110.47181 * 75.78470 * 19 17 15 36 36 H 1.09004 * 111.16736 * 155.78076 * 20 19 17 37 37 H 1.09004 * 111.16903 * 280.00850 * 20 19 17 38 38 H 0.96996 * 126.30106 * 329.17368 * 24 17 15 39 39 H 1.08997 * 109.31840 * 101.28822 * 25 12 11 40 40 H 1.09001 * 109.31488 * 220.71705 * 25 12 11 41 41 H 1.08998 * 109.77719 * 237.80181 * 26 9 7 42 42 H 1.08998 * 109.78451 * 358.61676 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0104 -1.2481 -0.4056 9 7 1.4269 -2.3298 0.5124 10 6 0.3556 -2.2486 1.5157 11 6 0.5995 -3.2789 2.5828 12 6 1.4817 -4.2209 2.4820 13 6 1.5998 -5.1951 3.6257 14 7 0.7893 -6.3821 3.3419 15 6 0.7415 -7.3937 4.2311 16 8 1.3689 -7.3213 5.2664 17 6 -0.0927 -8.6145 3.9394 18 1 0.0027 -8.8735 2.8849 19 6 -1.5692 -8.3124 4.2593 20 6 -2.2497 -9.7114 4.2902 21 16 -0.9332 -10.7138 5.0825 22 8 -1.0627 -10.7079 6.4976 23 8 -0.6922 -11.9122 4.3580 24 7 0.3830 -9.7376 4.7610 25 6 2.3940 -4.4115 1.3071 26 6 1.8429 -3.6745 0.0770 27 1 -0.4850 -0.8357 -0.0857 28 1 0.3504 -1.2547 1.9635 29 1 -0.6057 -2.4390 1.0385 30 1 0.0055 -3.2307 3.4835 31 1 2.6427 -5.4879 3.7474 32 1 1.2454 -4.7238 4.5424 33 1 0.2866 -6.4395 2.5144 34 1 -1.6568 -7.8244 5.2300 35 1 -2.0085 -7.6898 3.4798 36 1 -3.1533 -9.6962 4.8996 37 1 -2.4636 -10.0674 3.2824 38 1 1.2938 -9.8847 5.0605 39 1 3.3822 -4.0214 1.5510 40 1 2.4748 -5.4750 1.0821 41 1 0.9853 -4.2136 -0.3254 42 1 2.6182 -3.5923 -0.6847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001456528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = -90.549966 kcal Electronic energy + Delta-G solvation = -25886.249321 eV Core-core repulsion = 21993.247432 eV Total energy + Delta-G solvation = -3893.001888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19385 -39.59129 -38.14924 -37.59670 -36.95431 -36.55548 -34.70399 -32.76209 -32.57564 -31.45500 -29.17625 -27.53989 -25.61826 -24.45193 -23.74025 -22.81596 -21.60648 -20.60732 -19.84128 -19.29830 -18.33529 -18.13736 -17.52050 -17.05911 -16.71892 -16.48368 -16.29187 -15.85458 -15.71343 -15.48702 -15.37201 -15.15454 -14.75773 -14.43170 -14.24334 -14.06978 -13.78725 -13.54388 -13.35428 -13.26981 -13.09866 -13.01167 -12.97265 -12.57994 -12.52598 -12.49355 -12.15537 -11.89071 -11.70854 -11.55330 -11.31676 -11.20015 -10.53576 -10.49826 -10.16164 -9.77268 -8.96824 -8.25249 -5.36569 -0.76221 1.06343 1.38999 1.59262 1.62181 1.65847 1.84603 2.28222 2.62934 2.65565 2.95037 3.21313 3.36330 3.46664 3.48772 3.70096 3.79611 3.89748 3.91015 4.24199 4.33906 4.37331 4.44625 4.57087 4.64384 4.67728 4.70152 4.79210 4.82778 4.88685 4.95555 5.01300 5.06748 5.27381 5.33872 5.66075 5.80467 5.99479 6.03038 6.40880 6.50021 7.03959 7.14056 7.76956 8.22746 9.02137 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.002183 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.132887 B =12824.202419 C =12955.574883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.075 4.075 3 Si 1.110 2.890 4 H -0.292 1.292 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.352 4.352 8 H 0.052 0.948 9 N -0.622 5.622 10 C 0.181 3.819 11 C -0.139 4.139 12 C -0.130 4.130 13 C 0.166 3.834 14 N -0.704 5.704 15 C 0.512 3.488 16 O -0.572 6.572 17 C 0.093 3.907 18 H 0.147 0.853 19 C -0.124 4.124 20 C -0.552 4.552 21 S 2.570 3.430 22 O -1.007 7.007 23 O -0.995 6.995 24 N -1.091 6.091 25 C -0.086 4.086 26 C 0.140 3.860 27 H 0.257 0.743 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.418 0.582 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.435 0.565 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -19.712 5.642 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.271 4.271 3 Si 0.935 3.065 4 H -0.218 1.218 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.482 4.482 8 H 0.069 0.931 9 N -0.347 5.347 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.131 4.131 13 C 0.043 3.957 14 N -0.357 5.357 15 C 0.297 3.703 16 O -0.451 6.451 17 C -0.019 4.019 18 H 0.165 0.835 19 C -0.164 4.164 20 C -0.687 4.687 21 S 2.669 3.331 22 O -0.996 6.996 23 O -0.984 6.984 24 N -0.857 5.857 25 C -0.124 4.124 26 C 0.015 3.985 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.256 0.744 34 H 0.112 0.888 35 H 0.176 0.824 36 H 0.190 0.810 37 H 0.200 0.800 38 H 0.275 0.725 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.165 -18.929 6.929 20.808 hybrid contribution 0.413 -0.834 -0.548 1.080 sum -4.752 -19.762 6.381 21.304 Atomic orbital electron populations 1.70914 1.07420 1.29550 1.50788 1.27033 0.96637 1.04477 0.98984 0.82913 0.73932 0.72517 0.77160 1.21805 1.21002 1.20204 1.20178 0.97729 0.89861 1.40421 0.93060 1.44470 1.43471 1.02066 1.44742 1.19657 0.90147 0.96290 0.88288 1.22734 0.98409 0.95769 0.99004 1.20595 0.98391 0.97188 0.96909 1.20222 0.95781 0.84410 0.95307 1.45975 1.49271 1.17369 1.23067 1.20897 0.81789 0.84478 0.83150 1.90740 1.46233 1.80710 1.27392 1.22010 0.94554 0.85697 0.99615 0.83522 1.22844 0.88731 0.96773 1.08019 1.30677 1.14190 1.07159 1.16675 1.06193 0.77972 0.74549 0.74355 1.93581 1.86267 1.87280 1.32489 1.93592 1.84394 1.46265 1.74176 1.55019 1.24536 1.37505 1.68659 1.20781 0.97443 1.00741 0.93450 1.21248 0.97310 0.85045 0.94916 0.93318 0.93643 0.96058 0.86138 0.91421 0.91642 0.74422 0.88812 0.82436 0.81005 0.80006 0.72518 0.92306 0.88815 0.94799 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.56 12.55 21.65 0.27 -55.29 16 2 C -0.07 -4.14 4.73 84.86 0.40 -3.74 16 3 Si 1.11 49.81 29.99 68.60 2.06 51.86 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.35 -19.07 9.59 84.03 0.81 -18.27 16 8 H 0.05 2.79 7.95 -2.91 -0.02 2.77 16 9 N -0.62 -29.35 2.88 -702.37 -2.02 -31.37 16 10 C 0.18 7.90 4.89 85.42 0.42 8.31 16 11 C -0.14 -4.44 9.47 27.11 0.26 -4.19 16 12 C -0.13 -3.54 5.22 -15.14 -0.08 -3.62 16 13 C 0.17 3.70 5.66 85.63 0.48 4.19 16 14 N -0.70 -11.11 5.55 -466.78 -2.59 -13.70 16 15 C 0.51 9.12 7.05 87.66 0.62 9.74 16 16 O -0.57 -15.90 16.42 -3.02 -0.05 -15.95 16 17 C 0.09 0.91 3.41 44.50 0.15 1.06 16 18 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 19 C -0.12 -0.55 6.09 31.85 0.19 -0.36 16 20 C -0.55 -1.30 7.51 72.88 0.55 -0.75 16 21 S 2.57 37.11 6.49 -56.49 -0.37 36.74 16 22 O -1.01 -24.35 18.13 -127.77 -2.32 -26.66 16 23 O -0.99 -21.16 18.14 -127.77 -2.32 -23.48 16 24 N -1.09 -16.07 6.31 -169.99 -1.07 -17.14 16 25 C -0.09 -2.43 5.96 29.83 0.18 -2.26 16 26 C 0.14 5.14 6.61 86.43 0.57 5.71 16 27 H 0.26 15.15 6.38 -92.71 -0.59 14.56 16 28 H 0.05 2.31 6.77 -2.38 -0.02 2.29 16 29 H 0.02 0.98 7.40 -2.39 -0.02 0.96 16 30 H 0.12 3.30 7.73 -2.91 -0.02 3.28 16 31 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.07 1.57 7.78 -2.39 -0.02 1.55 16 33 H 0.42 4.26 8.46 -92.71 -0.78 3.47 16 34 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 35 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.18 -0.65 8.14 -2.38 -0.02 -0.67 16 38 H 0.43 7.16 8.76 -93.02 -0.82 6.34 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.98 7.96 -2.39 -0.02 1.96 16 Total: -1.00 -86.38 356.38 -4.22 -90.60 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.36 Total: 8.56 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.55 Total: -4.17 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -5.41 Total: -117.50 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -4.68 Total: -66.09 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.06 Total: 51.86 kcal Atomic # 16 Polarization: 37.11 SS G_CDS: -0.37 Total: 36.74 kcal Total: -86.38 -4.22 -90.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001456528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.046 kcal (2) G-P(sol) polarization free energy of solvation -86.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds