Wall clock time and date at job start Tue Mar 31 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99823 * 2 1 4 4 H 1.48507 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47181 * 299.99864 * 3 2 1 6 6 H 1.48497 * 109.47665 * 60.00022 * 3 2 1 7 7 C 1.38814 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.65004 * 359.97135 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.98904 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09001 * 111.00846 * 153.57645 * 12 11 10 14 14 N 1.46502 * 111.00342 * 277.43173 * 12 11 10 15 15 C 1.34778 * 119.99933 * 204.99872 * 14 12 11 16 16 O 1.21606 * 119.99979 * 359.97438 * 15 14 12 17 17 C 1.47426 * 120.00400 * 179.97438 * 15 14 12 18 18 C 1.38045 * 126.41241 * 0.02562 * 17 15 14 19 19 N 1.34255 * 107.41818 * 179.97438 * 18 17 15 20 20 H 0.97003 * 125.75767 * 180.02562 * 19 18 17 21 21 N 1.39937 * 108.49358 * 359.97438 * 19 18 17 22 22 C 1.30448 * 108.89181 * 359.74270 * 21 19 18 23 23 S 1.76203 * 125.98582 * 180.26185 * 22 21 19 24 24 N 1.65597 * 107.21978 * 270.16938 * 23 22 21 25 25 O 1.42106 * 106.40235 * 23.70955 * 23 22 21 26 26 O 1.42101 * 106.40141 * 156.62476 * 23 22 21 27 27 C 1.47425 * 125.64112 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00422 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88350 * 59.57113 * 10 9 7 30 30 H 1.08998 * 109.88602 * 298.40779 * 10 9 7 31 31 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 32 32 H 1.08993 * 110.72326 * 96.17079 * 11 10 9 33 33 H 0.96994 * 120.00503 * 24.99476 * 14 12 11 34 34 H 1.08007 * 126.29066 * 359.97438 * 18 17 15 35 35 H 0.97001 * 119.99343 * 359.97438 * 24 23 22 36 36 H 0.97000 * 119.99995 * 180.02562 * 24 23 22 37 37 H 1.08999 * 110.36633 * 85.25018 * 27 9 7 38 38 H 1.08996 * 110.37033 * 322.91399 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4485 -4.0441 -0.0254 12 6 0.8519 -4.6565 -0.6098 13 1 0.9837 -5.6856 -0.2755 14 7 0.8586 -4.5767 -2.0726 15 6 1.5905 -5.4506 -2.7917 16 8 2.2456 -6.3050 -2.2263 17 6 1.5969 -5.3708 -4.2638 18 6 0.9070 -4.4596 -5.0381 19 7 1.1858 -4.7315 -6.3229 20 1 0.8402 -4.2515 -7.0918 21 7 2.0599 -5.8234 -6.3660 22 6 2.3158 -6.2081 -5.1461 23 16 3.3696 -7.5413 -4.6804 24 7 2.4328 -8.9050 -4.6100 25 8 4.2756 -7.7321 -5.7584 26 8 3.7903 -7.2742 -3.3496 27 6 1.9335 -3.7311 0.0016 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5576 -2.0526 -0.8832 30 1 -0.5544 -2.0840 0.9022 31 1 -1.2984 -4.2519 -0.6754 32 1 -0.6317 -4.4176 0.9820 33 1 0.3364 -3.8951 -2.5236 34 1 0.2617 -3.6726 -4.6766 35 1 1.4851 -8.8533 -4.8104 36 1 2.8316 -9.7554 -4.3676 37 1 2.1662 -4.0414 1.0203 38 1 2.8330 -3.7409 -0.6138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015682495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:05 Heat of formation + Delta-G solvation = 7.210841 kcal Electronic energy + Delta-G solvation = -26547.584182 eV Core-core repulsion = 22555.281177 eV Total energy + Delta-G solvation = -3992.303005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.79078 -39.20920 -37.24494 -36.81020 -35.69194 -33.73670 -33.25854 -32.37352 -32.03501 -30.60133 -29.10401 -27.19408 -24.58018 -23.60186 -23.35492 -20.82696 -20.11261 -19.66809 -19.32238 -18.75526 -17.67384 -17.32555 -16.95170 -16.45368 -15.72828 -15.62455 -15.48399 -15.32443 -14.65730 -14.27340 -14.16920 -13.75286 -13.45307 -13.23278 -12.37907 -12.15900 -11.97677 -11.92957 -11.85695 -11.80690 -11.72869 -11.41712 -10.97126 -10.91676 -10.69923 -10.67125 -10.53054 -10.33322 -10.12334 -9.95712 -9.69105 -9.47991 -9.25665 -8.72087 -8.48847 -6.83092 -5.74658 -3.06423 0.28424 1.03608 1.27414 2.25007 3.06493 3.36777 3.43262 3.44220 3.46142 3.53134 3.67864 3.97321 4.48397 4.49524 4.77768 5.10386 5.22992 5.34198 5.45701 5.47671 5.59124 5.79250 5.84016 5.88091 6.21946 6.38274 6.49172 6.51554 6.54675 6.70576 6.76648 6.90738 7.08959 7.50848 7.54382 7.77715 7.88403 8.22711 8.58081 9.20582 9.80413 10.46232 11.37353 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.003486 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.442395 B = 8029.449813 C = 8421.449561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.131 3.869 13 H 0.094 0.906 14 N -0.700 5.700 15 C 0.561 3.439 16 O -0.491 6.491 17 C -0.204 4.204 18 C 0.103 3.897 19 N -0.443 5.443 20 H 0.450 0.550 21 N -0.184 5.184 22 C -0.433 4.433 23 S 2.720 3.280 24 N -1.244 6.244 25 O -0.959 6.959 26 O -0.890 6.890 27 C 0.123 3.877 28 H 0.250 0.750 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.201 0.799 35 H 0.414 0.586 36 H 0.421 0.579 37 H 0.029 0.971 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 -14.520 -12.206 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.026 3.974 13 H 0.112 0.888 14 N -0.351 5.351 15 C 0.344 3.656 16 O -0.365 6.365 17 C -0.220 4.220 18 C -0.048 4.048 19 N -0.152 5.152 20 H 0.296 0.704 21 N -0.010 5.010 22 C -0.680 4.680 23 S 2.798 3.202 24 N -0.920 5.920 25 O -0.948 6.948 26 O -0.878 6.878 27 C -0.004 4.004 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.217 0.783 35 H 0.240 0.760 36 H 0.252 0.748 37 H 0.047 0.953 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.183 -14.858 -12.817 19.743 hybrid contribution -1.221 2.081 -0.076 2.414 sum -3.404 -12.777 -12.893 18.468 Atomic orbital electron populations 1.69958 1.04778 1.24746 1.57872 1.24750 0.95709 0.97504 1.02610 0.86069 0.78857 0.83872 0.77161 1.20534 1.21950 1.21791 1.19138 0.90530 0.82408 1.42801 0.90461 1.44505 1.01465 0.99990 1.87202 1.21162 0.84628 0.87977 1.01136 1.23227 0.95711 1.00005 1.00313 1.22138 0.97183 0.99709 0.78366 0.88785 1.45609 1.48601 1.33626 1.07298 1.17314 0.80633 0.82965 0.84648 1.91074 1.39442 1.35083 1.70903 1.20259 1.05678 1.00971 0.95113 1.23463 0.98432 0.98852 0.84089 1.46524 1.35305 1.25388 1.07979 0.70441 1.77192 1.05405 0.99342 1.19036 1.35153 1.16649 1.20177 0.96036 1.01775 0.71763 0.72087 0.74588 1.52919 1.23219 1.25980 1.89871 1.93611 1.59036 1.84752 1.57373 1.93855 1.76919 1.82873 1.34172 1.21985 0.95021 0.86161 0.97274 0.93961 0.93771 0.93825 0.91677 0.90895 0.76905 0.78270 0.76008 0.74844 0.95322 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.97 10.31 55.49 0.57 -25.40 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.02 10.28 -15.06 -0.15 -6.17 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.80 3.39 -170.07 -0.58 -15.37 16 10 C 0.18 3.91 5.36 -3.07 -0.02 3.89 16 11 C -0.15 -2.56 6.55 -24.90 -0.16 -2.72 16 12 C 0.13 2.25 3.43 -65.78 -0.23 2.03 16 13 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 14 N -0.70 -10.79 5.18 -52.79 -0.27 -11.06 16 15 C 0.56 8.95 7.80 -12.52 -0.10 8.85 16 16 O -0.49 -9.27 12.44 -19.80 -0.25 -9.52 16 17 C -0.20 -2.68 6.12 -105.07 -0.64 -3.32 16 18 C 0.10 0.96 11.52 -16.56 -0.19 0.77 16 19 N -0.44 -3.72 7.29 30.85 0.22 -3.49 16 20 H 0.45 1.92 8.96 -182.72 -1.64 0.28 16 21 N -0.18 -2.19 12.63 31.51 0.40 -1.79 16 22 C -0.43 -5.65 7.26 -16.98 -0.12 -5.77 16 23 S 2.72 35.41 6.27 -107.50 -0.67 34.74 16 24 N -1.24 -10.38 9.55 60.35 0.58 -9.80 16 25 O -0.96 -14.78 18.02 -57.17 -1.03 -15.81 16 26 O -0.89 -15.17 14.02 -67.37 -0.94 -16.12 16 27 C 0.12 2.58 6.93 -2.52 -0.02 2.57 16 28 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.04 1.05 7.38 -51.93 -0.38 0.67 16 30 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 5.44 7.59 -40.82 -0.31 5.13 16 34 H 0.20 1.20 7.46 -52.48 -0.39 0.81 16 35 H 0.41 2.54 8.92 -34.46 -0.31 2.23 16 36 H 0.42 2.62 8.96 -34.47 -0.31 2.31 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -38.97 333.74 -9.05 -48.02 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.36 Total: 4.08 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.73 Total: -0.25 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: 0.92 Total: -66.93 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -2.22 Total: -41.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 35.41 SS G_CDS: -0.67 Total: 34.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.97 -9.05 -48.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015682495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.235 kcal (2) G-P(sol) polarization free energy of solvation -38.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds