Wall clock time and date at job start Tue Mar 31 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47053 * 299.99170 * 3 2 1 6 6 H 1.48498 * 109.47664 * 59.99553 * 3 2 1 7 7 C 1.38814 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00268 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64744 * 359.97438 * 9 7 2 11 11 C 1.54323 * 107.27157 * 178.96038 * 10 9 7 12 12 C 1.55155 * 102.94203 * 337.80631 * 11 10 9 13 13 H 1.08998 * 111.00648 * 277.39270 * 12 11 10 14 14 N 1.46505 * 111.00260 * 153.57359 * 12 11 10 15 15 C 1.34783 * 119.99386 * 155.00098 * 14 12 11 16 16 O 1.21521 * 120.00570 * 359.97438 * 15 14 12 17 17 C 1.48021 * 119.99340 * 180.02562 * 15 14 12 18 18 C 1.39461 * 119.92352 * 359.97438 * 17 15 14 19 19 C 1.38454 * 120.30580 * 179.74633 * 18 17 15 20 20 C 1.38593 * 119.89893 * 0.25595 * 19 18 17 21 21 C 1.40987 * 120.06085 * 0.02562 * 20 19 18 22 22 C 1.38427 * 119.96164 * 0.02562 * 21 20 19 23 23 C 1.47834 * 105.88899 * 179.97438 * 21 20 19 24 24 O 1.21450 * 125.69230 * 179.97438 * 23 21 20 25 25 N 1.34503 * 108.61990 * 359.97438 * 23 21 20 26 26 C 1.34506 * 111.10791 * 359.97438 * 25 23 21 27 27 O 1.21432 * 125.72405 * 179.97438 * 26 25 23 28 28 C 1.47427 * 125.65201 * 179.97438 * 9 7 2 29 29 H 0.97002 * 119.99915 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.88127 * 59.54404 * 10 9 7 31 31 H 1.09008 * 109.88081 * 298.37701 * 10 9 7 32 32 H 1.09002 * 110.71873 * 219.44486 * 11 10 9 33 33 H 1.09001 * 110.87137 * 96.23988 * 11 10 9 34 34 H 0.96996 * 120.00230 * 335.00373 * 14 12 11 35 35 H 1.08002 * 119.85127 * 0.03028 * 18 17 15 36 36 H 1.07994 * 120.05059 * 180.23492 * 19 18 17 37 37 H 1.08002 * 120.19309 * 180.02562 * 22 21 20 38 38 H 0.96997 * 124.44673 * 179.97438 * 25 23 21 39 39 H 1.08997 * 110.36457 * 85.26806 * 28 9 7 40 40 H 1.08993 * 110.36199 * 322.94821 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 0.0005 11 6 -0.4486 -4.0441 -0.0262 12 6 0.8518 -4.6561 -0.6109 13 1 0.8565 -4.5969 -1.6992 14 7 1.0289 -6.0395 -0.1622 15 6 1.7592 -6.8989 -0.9002 16 8 2.2703 -6.5266 -1.9379 17 6 1.9377 -8.2967 -0.4471 18 6 1.3500 -8.7225 0.7438 19 6 1.5075 -10.0296 1.1724 20 6 2.2568 -10.9185 0.4179 21 6 2.8583 -10.4925 -0.7839 22 6 2.7007 -9.1850 -1.2104 23 6 3.5686 -11.6723 -1.3215 24 8 4.2113 -11.7040 -2.3515 25 7 3.3843 -12.7049 -0.4795 26 6 2.6243 -12.3444 0.5701 27 8 2.2936 -13.0678 1.4877 28 6 1.9333 -3.7312 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5576 -2.0522 -0.8831 31 1 -0.5544 -2.0844 0.9025 32 1 -1.2986 -4.2515 -0.6763 33 1 -0.6334 -4.4204 0.9800 34 1 0.6207 -6.3368 0.6659 35 1 0.7656 -8.0307 1.3322 36 1 1.0475 -10.3559 2.0933 37 1 3.1595 -8.8548 -2.1307 38 1 3.7513 -13.5930 -0.6118 39 1 2.1665 -4.0420 1.0189 40 1 2.8327 -3.7405 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016019300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:44 Heat of formation + Delta-G solvation = -20.204240 kcal Electronic energy + Delta-G solvation = -26472.679737 eV Core-core repulsion = 22447.284317 eV Total energy + Delta-G solvation = -4025.395420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -42.73164 -40.28021 -39.14818 -38.43782 -37.25817 -36.14441 -34.31187 -32.37151 -31.72929 -31.44723 -29.23653 -27.40809 -25.86172 -25.16171 -24.27766 -23.18456 -21.09574 -20.94007 -20.53519 -20.05442 -18.49132 -18.34278 -17.66276 -16.93394 -16.90453 -16.43335 -15.93564 -15.64008 -15.26448 -14.95754 -14.68558 -14.56267 -14.52546 -14.29658 -14.11490 -13.57224 -13.15366 -12.93441 -12.51716 -12.39609 -12.27089 -11.88368 -11.17529 -11.11862 -10.97238 -10.96399 -10.93766 -10.82600 -10.49488 -10.12537 -10.00487 -9.99244 -9.84539 -9.77750 -9.75933 -8.93802 -8.65046 -6.89810 -5.76277 -3.10022 -0.65696 0.33479 1.23270 2.02767 2.40615 2.55947 2.83741 3.18454 3.30110 3.38413 3.44531 3.46664 3.70680 3.99757 4.26212 4.38849 4.48629 4.59963 4.67132 5.16007 5.18718 5.28816 5.32378 5.37352 5.46717 5.51399 5.57699 5.63549 5.70280 5.83518 5.95868 6.05650 6.20237 6.32286 6.44122 6.59926 6.61216 6.82932 7.19383 7.41501 7.50235 7.51407 7.76525 8.07684 8.20086 9.16935 9.76666 10.40563 11.35701 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.002162 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.217218 B =12947.963152 C =13378.812198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.125 3.875 13 H 0.101 0.899 14 N -0.706 5.706 15 C 0.552 3.448 16 O -0.523 6.523 17 C -0.099 4.099 18 C -0.062 4.062 19 C -0.047 4.047 20 C -0.125 4.125 21 C -0.150 4.150 22 C 0.012 3.988 23 C 0.580 3.420 24 O -0.456 6.456 25 N -0.679 5.679 26 C 0.579 3.421 27 O -0.461 6.461 28 C 0.129 3.871 29 H 0.252 0.748 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.397 0.603 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.431 0.569 39 H 0.020 0.980 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -24.424 2.847 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.119 0.881 14 N -0.356 5.356 15 C 0.337 3.663 16 O -0.399 6.399 17 C -0.103 4.103 18 C -0.081 4.081 19 C -0.066 4.066 20 C -0.129 4.129 21 C -0.154 4.154 22 C -0.007 4.007 23 C 0.368 3.632 24 O -0.326 6.326 25 N -0.346 5.346 26 C 0.367 3.633 27 O -0.331 6.331 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.233 0.767 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.273 0.727 39 H 0.038 0.962 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.991 -24.186 2.038 24.291 hybrid contribution 0.393 0.253 0.430 0.635 sum 1.384 -23.932 2.468 24.099 Atomic orbital electron populations 1.69947 1.04891 1.25045 1.57191 1.24810 0.95768 0.97737 1.02137 0.86017 0.78767 0.83580 0.77242 1.20457 1.21691 1.21737 1.19114 0.90544 0.82189 1.43684 0.90276 1.44397 1.01612 0.99767 1.87266 1.21164 0.84546 0.87332 1.01620 1.23200 0.95754 1.00100 0.99769 1.22433 0.97237 0.77918 1.00350 0.88118 1.45947 1.52132 1.11829 1.25734 1.18056 0.79490 0.84422 0.84358 1.90836 1.47606 1.77978 1.23496 1.20328 0.99286 0.94864 0.95812 1.21694 0.96317 0.95630 0.94445 1.20724 0.95258 0.91375 0.99222 1.20661 1.00975 0.94277 0.96969 1.20359 1.02571 0.95042 0.97379 1.20827 0.92074 0.89023 0.98812 1.18235 0.79022 0.83528 0.82423 1.90887 1.36796 1.83641 1.21294 1.44423 1.50470 1.15748 1.23988 1.18332 0.76745 0.87442 0.80781 1.90866 1.51584 1.58875 1.31809 1.21818 0.94786 0.86198 0.97048 0.93731 0.93128 0.93460 0.91447 0.91964 0.76733 0.83350 0.83153 0.82492 0.72653 0.96192 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.31 55.49 0.57 -25.91 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -14.96 3.40 -170.08 -0.58 -15.54 16 10 C 0.18 4.07 5.37 -3.06 -0.02 4.05 16 11 C -0.15 -2.43 6.60 -24.90 -0.16 -2.59 16 12 C 0.13 2.05 3.42 -65.79 -0.23 1.82 16 13 H 0.10 1.85 7.54 -51.93 -0.39 1.46 16 14 N -0.71 -8.45 5.15 -52.62 -0.27 -8.73 16 15 C 0.55 7.02 7.78 -12.25 -0.10 6.92 16 16 O -0.52 -8.85 15.98 5.35 0.09 -8.77 16 17 C -0.10 -0.91 5.88 -104.86 -0.62 -1.53 16 18 C -0.06 -0.38 9.54 -39.05 -0.37 -0.75 16 19 C -0.05 -0.27 10.08 -39.37 -0.40 -0.67 16 20 C -0.12 -0.92 6.41 -104.70 -0.67 -1.59 16 21 C -0.15 -1.27 6.39 -104.86 -0.67 -1.94 16 22 C 0.01 0.11 9.63 -38.94 -0.37 -0.26 16 23 C 0.58 5.08 8.45 -12.46 -0.11 4.97 16 24 O -0.46 -5.29 18.04 5.41 0.10 -5.20 16 25 N -0.68 -4.45 5.76 -13.18 -0.08 -4.52 16 26 C 0.58 4.53 8.47 -12.36 -0.10 4.42 16 27 O -0.46 -4.66 18.04 5.43 0.10 -4.56 16 28 C 0.13 2.59 6.93 -2.54 -0.02 2.58 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 31 H 0.05 1.19 7.51 -51.92 -0.39 0.80 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 34 H 0.40 3.34 6.57 -40.82 -0.27 3.08 16 35 H 0.15 0.51 6.36 -52.49 -0.33 0.18 16 36 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.16 1.58 7.65 -52.49 -0.40 1.18 16 38 H 0.43 1.77 8.96 -40.82 -0.37 1.41 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -34.57 346.83 -8.13 -42.70 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.19 Total: -0.26 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -4.08 Total: 8.71 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.35 Total: -54.70 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.28 Total: -18.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.57 -8.13 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016019300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.497 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds