Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09002 * 110.85092 * 153.69981 * 12 11 10 14 14 N 1.46501 * 110.69436 * 277.04903 * 12 11 10 15 15 C 1.34773 * 119.99782 * 199.81994 * 14 12 11 16 16 O 1.21530 * 119.99982 * 0.02562 * 15 14 12 17 17 C 1.48020 * 119.99825 * 179.97438 * 15 14 12 18 18 C 1.39464 * 119.92161 * 359.72813 * 17 15 14 19 19 C 1.38455 * 120.30406 * 179.74358 * 18 17 15 20 20 C 1.38588 * 119.89738 * 0.54817 * 19 18 17 21 21 C 1.40987 * 120.06418 * 359.71081 * 20 19 18 22 22 C 1.38430 * 119.96172 * 0.02562 * 21 20 19 23 23 C 1.47827 * 105.89200 * 179.97438 * 21 20 19 24 24 O 1.21454 * 125.69346 * 179.97438 * 23 21 20 25 25 N 1.34505 * 108.62185 * 359.97438 * 23 21 20 26 26 C 1.34515 * 111.10714 * 359.97438 * 25 23 21 27 27 O 1.21427 * 125.72568 * 179.97438 * 26 25 23 28 28 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 29 29 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 31 31 H 1.09001 * 110.36709 * 85.21947 * 10 9 7 32 32 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 33 33 H 1.09001 * 111.00161 * 204.91727 * 11 10 9 34 34 H 0.97002 * 119.99754 * 19.82436 * 14 12 11 35 35 H 1.07998 * 119.84601 * 0.02562 * 18 17 15 36 36 H 1.08000 * 120.04444 * 180.23707 * 19 18 17 37 37 H 1.07992 * 120.19255 * 179.97438 * 22 21 20 38 38 H 0.96998 * 124.44628 * 180.02562 * 25 23 21 39 39 H 1.09002 * 109.88241 * 298.32312 * 28 9 7 40 40 H 1.09000 * 109.88049 * 59.33441 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 6 0.7807 -4.7551 0.0310 13 1 1.0286 -5.5930 0.6827 14 7 0.4686 -5.2233 -1.3216 15 6 1.1502 -6.2587 -1.8503 16 8 2.0235 -6.8044 -1.2048 17 6 0.8344 -6.7321 -3.2168 18 6 -0.1726 -6.1091 -3.9535 19 6 -0.4709 -6.5420 -5.2343 20 6 0.2260 -7.6065 -5.7836 21 6 1.2414 -8.2440 -5.0418 22 6 1.5421 -7.8064 -3.7634 23 6 1.7659 -9.3172 -5.9127 24 8 2.6567 -10.0912 -5.6252 25 7 1.0922 -9.2936 -7.0766 26 6 0.1675 -8.3167 -7.0813 27 8 -0.5873 -8.0594 -7.9970 28 6 1.9317 -3.7275 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5993 -1.7584 0.6159 31 1 -0.5277 -2.4856 -1.0173 32 1 -0.3519 -3.8970 1.7021 33 1 -1.3590 -4.3326 0.2807 34 1 -0.2287 -4.7879 -1.8367 35 1 -0.7191 -5.2822 -3.5246 36 1 -1.2490 -6.0540 -5.8026 37 1 2.3189 -8.2922 -3.1917 38 1 1.2516 -9.9018 -7.8152 39 1 2.5283 -3.8651 -0.9002 40 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016019301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -19.284930 kcal Electronic energy + Delta-G solvation = -26835.773088 eV Core-core repulsion = 22810.417533 eV Total energy + Delta-G solvation = -4025.355556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.65868 -40.23525 -39.08244 -38.40849 -37.22595 -36.07489 -34.10317 -32.33567 -31.64010 -31.32034 -29.24052 -27.46367 -25.81284 -25.09391 -24.36482 -23.15055 -21.10502 -20.87745 -20.31282 -19.97021 -18.42347 -18.31014 -17.56328 -16.90618 -16.86441 -16.37801 -15.89025 -15.58192 -15.15659 -14.97190 -14.70626 -14.47646 -14.46041 -14.25102 -13.86234 -13.52189 -13.26261 -13.05884 -12.56662 -12.29046 -12.09331 -11.70122 -11.14926 -11.09538 -10.94269 -10.89314 -10.87637 -10.86044 -10.52881 -10.20541 -10.03952 -9.93146 -9.75116 -9.69200 -9.65602 -8.91163 -8.69995 -6.91584 -5.72997 -3.14038 -0.57273 0.42155 1.31670 2.09368 2.47172 2.64028 2.92898 3.27917 3.37052 3.39288 3.41600 3.42534 3.78134 4.08761 4.36788 4.44502 4.51204 4.68896 4.77088 5.18726 5.28060 5.34969 5.37989 5.41046 5.42004 5.55283 5.63928 5.66272 5.74993 5.90883 6.03963 6.13086 6.23730 6.37988 6.40439 6.63915 6.67775 6.89157 7.25840 7.32354 7.50936 7.56990 7.74941 8.15351 8.27859 9.15177 9.75637 10.39159 11.31308 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.002569 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.111373 B =10898.130810 C =11399.188416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.150 3.850 11 C -0.153 4.153 12 C 0.130 3.870 13 H 0.092 0.908 14 N -0.699 5.699 15 C 0.553 3.447 16 O -0.530 6.530 17 C -0.100 4.100 18 C -0.060 4.060 19 C -0.046 4.046 20 C -0.125 4.125 21 C -0.152 4.152 22 C 0.012 3.988 23 C 0.581 3.419 24 O -0.458 6.458 25 N -0.680 5.680 26 C 0.580 3.420 27 O -0.460 6.460 28 C 0.127 3.873 29 H 0.253 0.747 30 H 0.109 0.891 31 H 0.011 0.989 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.431 0.569 39 H 0.026 0.974 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -16.349 -10.353 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.025 3.975 11 C -0.192 4.192 12 C 0.026 3.974 13 H 0.110 0.890 14 N -0.350 5.350 15 C 0.339 3.661 16 O -0.408 6.408 17 C -0.103 4.103 18 C -0.078 4.078 19 C -0.065 4.065 20 C -0.129 4.129 21 C -0.156 4.156 22 C -0.007 4.007 23 C 0.369 3.631 24 O -0.328 6.328 25 N -0.346 5.346 26 C 0.367 3.633 27 O -0.331 6.331 28 C 0.000 4.000 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.028 0.972 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.236 0.764 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.273 0.727 39 H 0.044 0.956 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.473 -16.692 -10.106 19.820 hybrid contribution 0.254 0.805 -0.806 1.167 sum -3.219 -15.887 -10.912 19.540 Atomic orbital electron populations 1.69750 1.04861 1.24954 1.57746 1.24764 0.95752 0.97700 1.02373 0.86140 0.78416 0.82922 0.77956 1.21234 1.21558 1.21119 1.19043 0.90544 0.82390 1.43035 0.90538 1.44498 1.01759 0.99733 1.86964 1.21967 0.84994 0.92458 0.98036 1.23406 0.95650 0.98985 1.01153 1.22139 0.97249 0.96529 0.81515 0.89006 1.45930 1.38575 1.32649 1.17839 1.18017 0.82182 0.80576 0.85333 1.90801 1.31277 1.57251 1.61423 1.20315 0.97413 0.97030 0.95563 1.21743 0.94824 0.98042 0.93233 1.20739 0.98045 0.93355 0.94331 1.20651 0.98910 0.98558 0.94801 1.20343 0.99970 0.99018 0.96220 1.20795 0.96229 0.92175 0.91532 1.18232 0.80493 0.83067 0.81307 1.90879 1.26507 1.39928 1.75533 1.44422 1.36344 1.34653 1.19227 1.18340 0.78852 0.79178 0.86917 1.90863 1.37329 1.65341 1.39562 1.21682 0.93760 0.85822 0.98724 0.93657 0.87297 0.97156 0.90351 0.91609 0.76376 0.83241 0.83102 0.82572 0.72697 0.95571 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.60 10.09 55.49 0.56 -25.04 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.22 -5.98 10.27 -15.06 -0.15 -6.14 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.57 3.39 -170.07 -0.58 -15.15 16 10 C 0.15 3.26 5.87 -2.53 -0.01 3.25 16 11 C -0.15 -2.49 6.64 -24.44 -0.16 -2.65 16 12 C 0.13 2.11 3.26 -65.96 -0.22 1.89 16 13 H 0.09 1.45 7.70 -51.93 -0.40 1.05 16 14 N -0.70 -9.52 5.07 -52.79 -0.27 -9.79 16 15 C 0.55 7.63 7.77 -12.25 -0.10 7.53 16 16 O -0.53 -9.05 16.07 5.34 0.09 -8.96 16 17 C -0.10 -1.05 5.88 -104.86 -0.62 -1.67 16 18 C -0.06 -0.48 9.54 -39.04 -0.37 -0.85 16 19 C -0.05 -0.34 10.08 -39.37 -0.40 -0.74 16 20 C -0.13 -1.08 6.41 -104.70 -0.67 -1.75 16 21 C -0.15 -1.44 6.39 -104.86 -0.67 -2.11 16 22 C 0.01 0.13 9.63 -38.94 -0.37 -0.25 16 23 C 0.58 5.54 8.45 -12.46 -0.11 5.43 16 24 O -0.46 -5.59 18.04 5.41 0.10 -5.49 16 25 N -0.68 -5.00 5.76 -13.18 -0.08 -5.08 16 26 C 0.58 5.12 8.47 -12.36 -0.10 5.01 16 27 O -0.46 -5.12 18.04 5.43 0.10 -5.03 16 28 C 0.13 2.59 6.97 -3.07 -0.02 2.57 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.11 2.73 5.87 -51.93 -0.30 2.43 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 4.61 6.63 -40.82 -0.27 4.34 16 35 H 0.15 0.92 6.36 -52.49 -0.33 0.59 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.16 1.68 7.65 -52.49 -0.40 1.28 16 38 H 0.43 2.08 8.96 -40.82 -0.37 1.71 16 39 H 0.03 0.56 8.04 -51.93 -0.42 0.15 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -33.11 346.44 -8.11 -41.22 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.15 Total: 2.49 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -4.07 Total: 9.15 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.36 Total: -55.06 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.28 Total: -19.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.11 -8.11 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016019301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.932 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds