Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48502 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46955 * 300.00146 * 3 2 1 6 6 H 1.48500 * 109.46869 * 59.99913 * 3 2 1 7 7 C 1.38813 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00266 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99619 * 180.02562 * 9 7 2 11 11 H 1.09008 * 110.78457 * 36.78772 * 10 9 7 12 12 C 1.55400 * 110.85212 * 160.08383 * 10 9 7 13 13 C 1.54909 * 101.66794 * 153.69896 * 12 10 9 14 14 N 1.47423 * 104.83257 * 323.07944 * 13 12 10 15 15 C 1.34775 * 125.65138 * 204.08705 * 14 13 12 16 16 O 1.21532 * 120.00201 * 174.26647 * 15 14 13 17 17 C 1.48018 * 120.00034 * 354.27316 * 15 14 13 18 18 C 1.39463 * 119.92767 * 155.48779 * 17 15 14 19 19 C 1.38438 * 120.30878 * 179.97438 * 18 17 15 20 20 C 1.38587 * 119.90487 * 0.02562 * 19 18 17 21 21 C 1.40998 * 120.05597 * 359.97438 * 20 19 18 22 22 C 1.38423 * 119.95784 * 359.72304 * 21 20 19 23 23 C 1.47832 * 105.88471 * 179.97438 * 21 20 19 24 24 O 1.21458 * 125.68747 * 180.02562 * 23 21 20 25 25 N 1.34504 * 108.62305 * 359.97438 * 23 21 20 26 26 C 1.34509 * 111.11068 * 0.02562 * 25 23 21 27 27 O 1.21421 * 125.72591 * 179.97438 * 26 25 23 28 28 C 1.47025 * 108.70071 * 24.12509 * 14 13 12 29 29 H 0.97001 * 120.00395 * 0.02562 * 1 2 3 30 30 H 0.96993 * 119.99834 * 0.02562 * 9 7 2 31 31 H 1.08999 * 110.89017 * 35.63308 * 12 10 9 32 32 H 1.08999 * 111.04254 * 271.83554 * 12 10 9 33 33 H 1.09003 * 110.37165 * 204.24067 * 13 12 10 34 34 H 1.09005 * 110.36683 * 81.91562 * 13 12 10 35 35 H 1.08007 * 119.84205 * 359.97078 * 18 17 15 36 36 H 1.07998 * 120.05063 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.19005 * 180.29926 * 22 21 20 38 38 H 0.97006 * 124.44324 * 180.02562 * 25 23 21 39 39 H 1.09004 * 109.87909 * 118.36411 * 28 14 13 40 40 H 1.09003 * 109.88142 * 239.36392 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9584 -3.5835 0.6098 12 6 1.1524 -4.8185 0.4942 13 6 1.8012 -6.0402 -0.2030 14 7 2.2223 -5.5409 -1.5247 15 6 2.4069 -6.2944 -2.6268 16 8 2.6547 -5.7634 -3.6915 17 6 2.3076 -7.7687 -2.5405 18 6 1.9869 -8.5122 -3.6760 19 6 1.8925 -9.8915 -3.6044 20 6 2.1170 -10.5377 -2.3991 21 6 2.4416 -9.7917 -1.2475 22 6 2.5417 -8.4131 -1.3225 23 6 2.6108 -10.7789 -0.1603 24 8 2.8954 -10.5219 0.9922 25 7 2.3958 -12.0091 -0.6598 26 6 2.0998 -11.9547 -1.9708 27 8 1.8591 -12.9079 -2.6834 28 6 2.4086 -4.0849 -1.4411 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 0.1242 -4.6788 0.1604 32 1 1.1996 -4.9170 1.5787 33 1 1.0733 -6.8438 -0.3154 34 1 2.6651 -6.3864 0.3646 35 1 1.8114 -8.0094 -4.6157 36 1 1.6443 -10.4631 -4.4864 37 1 2.7948 -7.8384 -0.4438 38 1 2.4475 -12.8281 -0.1425 39 1 3.4453 -3.8305 -1.6618 40 1 1.7460 -3.5853 -2.1479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019678864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = -22.593709 kcal Electronic energy + Delta-G solvation = -26880.539443 eV Core-core repulsion = 22855.040408 eV Total energy + Delta-G solvation = -4025.499035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 6.09 seconds Orbital eigenvalues (eV) -42.71336 -40.39260 -39.12864 -38.44437 -37.35961 -36.11629 -34.33188 -32.30724 -31.69898 -31.23574 -29.76475 -27.76181 -25.88453 -25.21450 -24.13353 -23.01801 -22.46566 -21.09487 -20.24383 -19.66847 -18.50696 -18.10811 -17.47030 -17.06441 -16.90515 -16.39352 -16.25051 -15.83422 -15.35909 -15.02384 -14.74689 -14.50867 -14.50536 -14.18620 -13.64908 -13.53589 -13.25787 -13.16708 -12.80357 -12.66272 -12.44107 -12.01953 -11.63118 -11.24555 -11.10210 -10.93794 -10.91866 -10.88344 -10.78519 -10.43381 -10.12202 -10.05951 -9.82439 -9.75593 -9.69154 -9.06810 -8.53818 -7.15074 -5.88905 -3.20250 -0.58913 0.34362 1.31154 2.05580 2.42392 2.58076 2.84697 3.08669 3.29543 3.37990 3.44339 3.46114 3.73847 4.00126 4.18852 4.47500 4.49892 4.59237 4.77458 4.78924 5.06543 5.07937 5.21577 5.26517 5.35352 5.37421 5.50987 5.58516 5.60255 5.68493 5.81567 5.87295 5.98478 6.02509 6.18975 6.24625 6.35699 6.54143 6.63113 6.78700 7.21312 7.51196 7.61121 8.04995 8.28339 9.40651 9.92967 10.27390 11.33035 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.002450 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.880979 B =11427.153786 C =12116.379841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.141 4.141 13 C 0.092 3.908 14 N -0.602 5.602 15 C 0.563 3.437 16 O -0.529 6.529 17 C -0.096 4.096 18 C -0.038 4.038 19 C -0.048 4.048 20 C -0.127 4.127 21 C -0.150 4.150 22 C -0.025 4.025 23 C 0.580 3.420 24 O -0.457 6.457 25 N -0.679 5.679 26 C 0.580 3.420 27 O -0.461 6.461 28 C 0.081 3.919 29 H 0.257 0.743 30 H 0.387 0.613 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.431 0.569 39 H 0.062 0.938 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -24.268 -2.298 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.180 4.180 13 C -0.031 4.031 14 N -0.335 5.335 15 C 0.351 3.649 16 O -0.407 6.407 17 C -0.100 4.100 18 C -0.057 4.057 19 C -0.067 4.067 20 C -0.131 4.131 21 C -0.154 4.154 22 C -0.044 4.044 23 C 0.368 3.632 24 O -0.327 6.327 25 N -0.346 5.346 26 C 0.367 3.633 27 O -0.332 6.332 28 C -0.044 4.044 29 H 0.067 0.933 30 H 0.222 0.778 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.273 0.727 39 H 0.080 0.920 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.673 -24.091 -2.715 24.521 hybrid contribution 0.159 0.441 0.234 0.524 sum 3.833 -23.651 -2.481 24.088 Atomic orbital electron populations 1.69664 1.05195 1.25900 1.56854 1.24783 0.95532 0.97917 1.02230 0.86103 0.78871 0.83835 0.77250 1.20403 1.21719 1.21749 1.19291 0.91163 0.83852 1.43771 0.90817 1.42369 1.05845 0.99389 1.87577 1.21254 0.94927 0.86395 0.91448 0.91423 1.23137 1.00428 0.93879 1.00554 1.22695 0.98741 0.98115 0.83578 1.48499 1.65644 1.09956 1.09411 1.17755 0.78447 0.85366 0.83378 1.90819 1.49065 1.73361 1.27471 1.20288 1.01493 0.94346 0.93829 1.21617 0.92711 0.92674 0.98729 1.20762 0.95872 0.93637 0.96390 1.20662 1.03542 0.93359 0.95528 1.20347 1.06297 0.94438 0.94327 1.21450 0.92758 0.91911 0.98264 1.18244 0.75019 0.82642 0.87282 1.90886 1.41633 1.82251 1.17950 1.44423 1.66500 1.11356 1.12357 1.18340 0.74747 0.88905 0.81278 1.90859 1.43023 1.42211 1.57089 1.23380 1.01580 0.76790 1.02627 0.93335 0.77803 0.90268 0.89623 0.90577 0.90686 0.82668 0.83180 0.82356 0.72666 0.91976 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.55 9.98 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.48 5.18 -51.53 -0.27 -16.74 16 10 C 0.17 3.03 3.60 -65.97 -0.24 2.79 16 11 H 0.07 1.18 8.12 -51.92 -0.42 0.75 16 12 C -0.14 -1.90 6.71 -24.45 -0.16 -2.07 16 13 C 0.09 1.01 4.99 -2.53 -0.01 1.00 16 14 N -0.60 -8.50 3.33 -171.57 -0.57 -9.07 16 15 C 0.56 8.01 7.64 -12.25 -0.09 7.91 16 16 O -0.53 -9.43 16.91 5.34 0.09 -9.34 16 17 C -0.10 -1.00 5.67 -104.86 -0.59 -1.59 16 18 C -0.04 -0.32 9.58 -39.05 -0.37 -0.70 16 19 C -0.05 -0.34 10.08 -39.38 -0.40 -0.73 16 20 C -0.13 -1.01 6.41 -104.70 -0.67 -1.68 16 21 C -0.15 -1.28 6.39 -104.86 -0.67 -1.95 16 22 C -0.02 -0.22 8.10 -38.94 -0.32 -0.54 16 23 C 0.58 4.98 8.45 -12.46 -0.11 4.87 16 24 O -0.46 -5.08 18.04 5.40 0.10 -4.98 16 25 N -0.68 -4.52 5.76 -13.18 -0.08 -4.59 16 26 C 0.58 4.71 8.47 -12.36 -0.10 4.61 16 27 O -0.46 -4.82 18.04 5.43 0.10 -4.73 16 28 C 0.08 1.41 6.62 -3.07 -0.02 1.38 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.39 9.57 7.72 -40.82 -0.32 9.26 16 31 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.70 6.84 -51.93 -0.36 0.34 16 34 H 0.08 0.68 6.81 -51.93 -0.35 0.33 16 35 H 0.16 1.22 7.82 -52.48 -0.41 0.81 16 36 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.16 1.32 4.61 -52.48 -0.24 1.07 16 38 H 0.43 1.81 8.96 -40.82 -0.37 1.45 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.57 8.03 -51.93 -0.42 1.16 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -33.11 346.78 -7.82 -40.93 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.11 Total: 6.61 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -4.01 Total: 6.30 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.19 Total: -56.66 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.29 Total: -19.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.11 -7.82 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019678864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.339 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.09 seconds