Wall clock time and date at job start Tue Mar 31 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48497 * 109.47590 * 270.00282 * 3 2 1 5 5 H 1.48494 * 109.47147 * 30.00775 * 3 2 1 6 6 H 1.48506 * 109.47442 * 150.00399 * 3 2 1 7 7 C 1.38812 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00108 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99972 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.85122 * 336.19439 * 10 9 7 12 12 C 1.53779 * 113.69115 * 107.46271 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.99342 * 12 10 9 14 14 H 1.09004 * 113.61451 * 220.02152 * 13 12 10 15 15 N 1.46496 * 113.61524 * 89.11591 * 13 12 10 16 16 C 1.34776 * 120.00015 * 107.50411 * 15 13 12 17 17 O 1.21608 * 119.99850 * 359.97438 * 16 15 13 18 18 C 1.47427 * 120.00218 * 180.02562 * 16 15 13 19 19 C 1.38041 * 126.41283 * 0.02562 * 18 16 15 20 20 N 1.34263 * 107.41588 * 179.97438 * 19 18 16 21 21 H 0.97002 * 125.74984 * 180.02562 * 20 19 18 22 22 N 1.39927 * 108.49233 * 0.02562 * 20 19 18 23 23 C 1.30450 * 108.89977 * 359.75203 * 22 20 19 24 24 S 1.76199 * 125.99147 * 180.26204 * 23 22 20 25 25 N 1.65599 * 107.21781 * 270.14081 * 24 23 22 26 26 O 1.42102 * 106.40183 * 23.68191 * 24 23 22 27 27 O 1.42100 * 106.40189 * 156.60368 * 24 23 22 28 28 C 1.53779 * 113.61245 * 205.00077 * 10 9 7 29 29 H 0.97002 * 120.00143 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00401 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61557 * 25.44454 * 12 10 9 32 32 H 1.09004 * 113.61501 * 254.53874 * 12 10 9 33 33 H 0.96998 * 120.00377 * 287.50245 * 15 13 12 34 34 H 1.08004 * 126.29403 * 359.95039 * 19 18 16 35 35 H 0.96998 * 120.00082 * 0.02562 * 25 24 23 36 36 H 0.96998 * 119.99883 * 180.02562 * 25 24 23 37 37 H 1.08997 * 113.61646 * 105.38794 * 28 10 9 38 38 H 1.08998 * 113.69354 * 334.49102 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 3.0652 -3.5638 -0.4079 12 6 2.0019 -4.4038 1.3413 13 6 1.8500 -5.6984 0.5252 14 1 1.1365 -6.4029 0.9528 15 7 3.1272 -6.3234 0.1730 16 6 3.5140 -7.4589 0.7874 17 8 2.8029 -7.9644 1.6345 18 6 4.7996 -8.0876 0.4333 19 6 5.7057 -7.6295 -0.5020 20 7 6.7376 -8.4883 -0.5160 21 1 7.5251 -8.4189 -1.0781 22 7 6.4856 -9.5002 0.4170 23 6 5.3373 -9.2691 0.9912 24 16 4.5871 -10.2584 2.2415 25 7 3.6525 -11.3906 1.4755 26 8 5.6407 -10.9703 2.8759 27 8 3.6915 -9.4070 2.9432 28 6 1.2595 -4.8285 -0.5971 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.1246 -4.1598 1.9405 32 1 2.9311 -4.3520 1.9089 33 1 3.6946 -5.9201 -0.5025 34 1 5.6031 -6.7435 -1.1110 35 1 3.6065 -11.4067 0.5068 36 1 3.1509 -12.0378 1.9957 37 1 1.5893 -5.1195 -1.5944 38 1 0.1791 -4.7018 -0.5287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020570485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:54 Heat of formation + Delta-G solvation = 13.147453 kcal Electronic energy + Delta-G solvation = -25656.193566 eV Core-core repulsion = 21664.147992 eV Total energy + Delta-G solvation = -3992.045574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.00711 -39.68921 -37.84972 -37.03367 -35.84041 -34.05802 -33.37955 -32.77309 -32.57181 -30.89717 -29.70108 -25.11659 -24.85724 -23.80166 -23.59577 -22.13812 -20.74655 -19.46495 -19.23959 -18.66380 -17.81742 -17.47313 -17.15978 -16.78035 -15.86340 -15.73109 -15.65987 -15.45417 -14.98261 -14.45908 -14.36042 -13.95298 -13.66772 -13.47329 -12.67641 -12.29667 -12.14064 -12.11306 -11.99688 -11.89882 -11.84826 -11.74194 -11.47554 -10.92519 -10.88483 -10.78335 -10.65079 -10.32147 -10.23325 -9.93545 -9.72462 -9.57114 -9.48063 -8.92395 -8.73475 -7.00170 -5.82265 -3.11227 0.13145 0.84415 1.04476 2.05042 2.90936 3.16895 3.26329 3.39279 3.44824 3.46767 3.50742 3.76473 4.24020 4.54860 4.55216 4.84307 5.04549 5.06975 5.22589 5.34254 5.44500 5.50673 5.76833 5.86409 5.91730 6.16056 6.23720 6.31428 6.33732 6.48188 6.53627 6.65144 6.71492 6.79346 7.08992 7.58228 7.64339 8.32011 8.36217 9.47444 10.05199 10.39362 11.40076 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.002552 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.672109 B =10971.070827 C =11499.032728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.072 0.928 12 C -0.176 4.176 13 C 0.119 3.881 14 H 0.100 0.900 15 N -0.703 5.703 16 C 0.561 3.439 17 O -0.482 6.482 18 C -0.206 4.206 19 C 0.100 3.900 20 N -0.442 5.442 21 H 0.450 0.550 22 N -0.180 5.180 23 C -0.432 4.432 24 S 2.719 3.281 25 N -1.244 6.244 26 O -0.957 6.957 27 O -0.891 6.891 28 C -0.159 4.159 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.394 0.606 34 H 0.200 0.800 35 H 0.414 0.586 36 H 0.422 0.578 37 H 0.063 0.937 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.243 -22.703 -4.660 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.090 0.910 12 C -0.219 4.219 13 C 0.014 3.986 14 H 0.118 0.882 15 N -0.355 5.355 16 C 0.345 3.655 17 O -0.355 6.355 18 C -0.222 4.222 19 C -0.051 4.051 20 N -0.151 5.151 21 H 0.297 0.703 22 N -0.006 5.006 23 C -0.679 4.679 24 S 2.797 3.203 25 N -0.920 5.920 26 O -0.946 6.946 27 O -0.879 6.879 28 C -0.199 4.199 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.217 0.783 35 H 0.240 0.760 36 H 0.253 0.747 37 H 0.081 0.919 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.049 -23.373 -3.094 26.478 hybrid contribution 0.314 1.880 -1.681 2.541 sum 12.363 -21.494 -4.775 25.251 Atomic orbital electron populations 1.69653 1.05138 1.25805 1.57308 1.24766 0.95520 0.97790 1.02757 0.86198 0.78706 0.83846 0.77461 1.21731 1.21716 1.20752 1.19274 0.91009 0.84249 1.43116 0.91174 1.42403 1.05800 0.99846 1.87003 1.21634 0.94925 0.85210 0.92886 0.91039 1.24311 1.02183 0.95209 1.00156 1.21821 0.84610 0.94193 0.97990 0.88183 1.45467 1.22352 1.25490 1.42152 1.17323 0.84677 0.81232 0.82239 1.91105 1.53030 1.62251 1.29154 1.20233 0.99701 0.98766 1.03543 1.23421 0.87581 0.95893 0.98167 1.46545 1.18665 1.18806 1.31105 0.70341 1.77229 1.14008 1.08270 1.01116 1.35214 1.02576 1.11629 1.18492 1.01815 0.73708 0.73104 0.71682 1.52902 1.67500 1.52330 1.19246 1.93618 1.57611 1.72298 1.71050 1.93855 1.61951 1.65535 1.66580 1.23866 1.01664 0.97247 0.97093 0.93398 0.77976 0.89488 0.92321 0.77198 0.78299 0.75971 0.74714 0.91874 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -17.15 5.40 -52.63 -0.28 -17.43 16 10 C 0.17 3.03 4.35 -67.12 -0.29 2.73 16 11 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 12 C -0.18 -3.04 7.68 -25.92 -0.20 -3.24 16 13 C 0.12 1.71 4.32 -67.12 -0.29 1.42 16 14 H 0.10 1.52 7.47 -51.93 -0.39 1.14 16 15 N -0.70 -8.30 5.25 -54.09 -0.28 -8.59 16 16 C 0.56 7.45 7.81 -12.52 -0.10 7.35 16 17 O -0.48 -8.17 12.40 -19.80 -0.25 -8.42 16 18 C -0.21 -2.15 6.12 -105.07 -0.64 -2.80 16 19 C 0.10 0.63 11.52 -16.56 -0.19 0.43 16 20 N -0.44 -2.62 7.29 30.85 0.22 -2.40 16 21 H 0.45 0.86 8.96 -182.73 -1.64 -0.78 16 22 N -0.18 -1.78 12.63 31.51 0.40 -1.39 16 23 C -0.43 -4.74 7.26 -16.98 -0.12 -4.86 16 24 S 2.72 31.14 6.27 -107.50 -0.67 30.47 16 25 N -1.24 -8.87 9.55 60.35 0.58 -8.29 16 26 O -0.96 -13.37 18.02 -57.17 -1.03 -14.40 16 27 O -0.89 -13.77 14.01 -67.38 -0.94 -14.72 16 28 C -0.16 -2.34 7.58 -25.92 -0.20 -2.54 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.39 9.91 7.92 -40.82 -0.32 9.58 16 31 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.39 3.43 7.62 -40.82 -0.31 3.12 16 34 H 0.20 0.40 7.46 -52.48 -0.39 0.01 16 35 H 0.41 2.04 8.92 -34.47 -0.31 1.73 16 36 H 0.42 2.18 8.96 -34.47 -0.31 1.87 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -40.05 340.97 -9.03 -49.08 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.32 Total: 9.62 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.28 Total: -8.68 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: 1.35 Total: -64.97 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -2.22 Total: -37.53 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 31.14 SS G_CDS: -0.67 Total: 30.47 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -40.05 -9.03 -49.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020570485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.229 kcal (2) G-P(sol) polarization free energy of solvation -40.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds