Wall clock time and date at job start Tue Mar 31 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48497 * 109.47590 * 270.00282 * 3 2 1 5 5 H 1.48494 * 109.47147 * 30.00775 * 3 2 1 6 6 H 1.48506 * 109.47442 * 150.00399 * 3 2 1 7 7 C 1.38812 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00108 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99972 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.85122 * 336.19439 * 10 9 7 12 12 C 1.53779 * 113.69115 * 107.46271 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.99342 * 12 10 9 14 14 H 1.09004 * 113.61451 * 220.02152 * 13 12 10 15 15 N 1.46496 * 113.61524 * 89.11591 * 13 12 10 16 16 C 1.34776 * 120.00015 * 107.50411 * 15 13 12 17 17 O 1.21608 * 119.99850 * 359.97438 * 16 15 13 18 18 C 1.47427 * 120.00218 * 180.02562 * 16 15 13 19 19 C 1.38041 * 126.41283 * 0.02562 * 18 16 15 20 20 N 1.34263 * 107.41588 * 179.97438 * 19 18 16 21 21 H 0.97002 * 125.74984 * 180.02562 * 20 19 18 22 22 N 1.39927 * 108.49233 * 0.02562 * 20 19 18 23 23 C 1.30450 * 108.89977 * 359.75203 * 22 20 19 24 24 S 1.76199 * 125.99147 * 180.26204 * 23 22 20 25 25 N 1.65599 * 107.21781 * 270.14081 * 24 23 22 26 26 O 1.42102 * 106.40183 * 23.68191 * 24 23 22 27 27 O 1.42100 * 106.40189 * 156.60368 * 24 23 22 28 28 C 1.53779 * 113.61245 * 205.00077 * 10 9 7 29 29 H 0.97002 * 120.00143 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00401 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61557 * 25.44454 * 12 10 9 32 32 H 1.09004 * 113.61501 * 254.53874 * 12 10 9 33 33 H 0.96998 * 120.00377 * 287.50245 * 15 13 12 34 34 H 1.08004 * 126.29403 * 359.95039 * 19 18 16 35 35 H 0.96998 * 120.00082 * 0.02562 * 25 24 23 36 36 H 0.96998 * 119.99883 * 180.02562 * 25 24 23 37 37 H 1.08997 * 113.61646 * 105.38794 * 28 10 9 38 38 H 1.08998 * 113.69354 * 334.49102 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 3.0652 -3.5638 -0.4079 12 6 2.0019 -4.4038 1.3413 13 6 1.8500 -5.6984 0.5252 14 1 1.1365 -6.4029 0.9528 15 7 3.1272 -6.3234 0.1730 16 6 3.5140 -7.4589 0.7874 17 8 2.8029 -7.9644 1.6345 18 6 4.7996 -8.0876 0.4333 19 6 5.7057 -7.6295 -0.5020 20 7 6.7376 -8.4883 -0.5160 21 1 7.5251 -8.4189 -1.0781 22 7 6.4856 -9.5002 0.4170 23 6 5.3373 -9.2691 0.9912 24 16 4.5871 -10.2584 2.2415 25 7 3.6525 -11.3906 1.4755 26 8 5.6407 -10.9703 2.8759 27 8 3.6915 -9.4070 2.9432 28 6 1.2595 -4.8285 -0.5971 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.1246 -4.1598 1.9405 32 1 2.9311 -4.3520 1.9089 33 1 3.6946 -5.9201 -0.5025 34 1 5.6031 -6.7435 -1.1110 35 1 3.6065 -11.4067 0.5068 36 1 3.1509 -12.0378 1.9957 37 1 1.5893 -5.1195 -1.5944 38 1 0.1791 -4.7018 -0.5287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020570485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:52 Heat of formation + Delta-G solvation = -23.518006 kcal Electronic energy + Delta-G solvation = -25657.783500 eV Core-core repulsion = 21664.147992 eV Total energy + Delta-G solvation = -3993.635508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.68716 -40.83154 -39.07131 -38.04196 -36.84375 -35.70646 -34.14666 -34.06064 -33.24738 -32.12501 -31.12048 -26.55096 -26.38570 -24.80112 -24.49147 -23.50569 -21.64821 -20.36072 -20.28654 -19.69909 -18.99501 -18.51128 -18.30641 -17.72789 -16.93325 -16.66039 -16.53766 -16.44853 -16.34007 -15.78426 -15.53239 -15.21954 -15.08586 -14.51947 -14.14606 -13.46305 -13.40155 -13.24408 -13.21979 -13.04605 -12.95620 -12.86584 -12.78224 -12.59047 -12.31908 -12.14147 -11.76878 -11.67396 -11.53096 -11.32580 -11.12429 -10.80059 -10.78778 -10.22872 -9.84757 -8.94298 -7.91720 -5.19548 -0.70445 0.12224 0.36865 1.49640 1.51225 1.54278 1.59206 2.08630 2.25405 2.33720 2.59138 2.67997 3.05214 3.40468 3.74779 3.81300 3.83560 3.93764 4.04380 4.15306 4.26564 4.40117 4.41381 4.64442 4.84538 4.99765 5.02451 5.22544 5.25660 5.29038 5.34820 5.54907 5.73422 5.80725 6.06606 6.30705 6.32799 6.67435 7.36821 7.38487 8.15157 8.36387 9.31800 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.002552 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.672109 B =10971.070827 C =11499.032728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.729 5.729 10 C 0.153 3.847 11 H 0.089 0.911 12 C -0.178 4.178 13 C 0.138 3.862 14 H 0.091 0.909 15 N -0.691 5.691 16 C 0.561 3.439 17 O -0.526 6.526 18 C -0.240 4.240 19 C 0.140 3.860 20 N -0.420 5.420 21 H 0.470 0.530 22 N -0.201 5.201 23 C -0.441 4.441 24 S 2.736 3.264 25 N -1.228 6.228 26 O -0.991 6.991 27 O -0.938 6.938 28 C -0.139 4.139 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.413 0.587 34 H 0.250 0.750 35 H 0.426 0.574 36 H 0.431 0.569 37 H 0.093 0.907 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.546 -23.070 -7.018 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.366 5.366 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.220 4.220 13 C 0.032 3.968 14 H 0.109 0.891 15 N -0.343 5.343 16 C 0.347 3.653 17 O -0.402 6.402 18 C -0.256 4.256 19 C -0.013 4.013 20 N -0.131 5.131 21 H 0.321 0.679 22 N -0.028 5.028 23 C -0.690 4.690 24 S 2.816 3.184 25 N -0.909 5.909 26 O -0.980 6.980 27 O -0.926 6.926 28 C -0.179 4.179 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.266 0.734 35 H 0.255 0.745 36 H 0.265 0.735 37 H 0.111 0.889 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.436 -23.815 -5.476 28.381 hybrid contribution -0.301 1.912 -1.017 2.186 sum 14.135 -21.903 -6.493 26.864 Atomic orbital electron populations 1.69811 1.06669 1.25959 1.59758 1.25557 0.96315 1.01132 1.04045 0.85182 0.77688 0.79724 0.77422 1.21218 1.22808 1.19452 1.19719 0.91633 0.85306 1.40545 0.90163 1.42632 1.05481 1.01159 1.87298 1.22019 0.95878 0.83865 0.93923 0.89305 1.24196 1.01011 0.97171 0.99627 1.21460 0.85722 0.92836 0.96808 0.89072 1.45249 1.21607 1.25108 1.42377 1.17692 0.85225 0.81023 0.81390 1.91097 1.54587 1.63451 1.31087 1.20027 0.99809 0.99600 1.06188 1.24066 0.85466 0.95876 0.95890 1.46583 1.19213 1.17471 1.29857 0.67872 1.77192 1.13520 1.09912 1.02181 1.34771 1.03273 1.12160 1.18823 1.00804 0.73079 0.72801 0.71699 1.52502 1.66881 1.51510 1.20009 1.93575 1.58666 1.72962 1.72776 1.93812 1.63081 1.66920 1.68804 1.23650 1.00816 0.94834 0.98571 0.94147 0.79465 0.91641 0.92844 0.74984 0.73377 0.74455 0.73490 0.88869 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.52 13.06 21.65 0.28 -58.24 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.24 -12.72 9.97 84.03 0.84 -11.88 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -34.75 5.40 -320.43 -1.73 -36.48 16 10 C 0.15 5.32 4.35 45.51 0.20 5.51 16 11 H 0.09 2.78 8.10 -2.38 -0.02 2.76 16 12 C -0.18 -6.04 7.68 31.12 0.24 -5.80 16 13 C 0.14 3.75 4.32 45.52 0.20 3.95 16 14 H 0.09 2.73 7.47 -2.39 -0.02 2.71 16 15 N -0.69 -14.37 5.25 -443.29 -2.33 -16.70 16 16 C 0.56 13.96 7.81 86.66 0.68 14.64 16 17 O -0.53 -17.88 12.40 19.92 0.25 -17.63 16 18 C -0.24 -4.40 6.12 -20.15 -0.12 -4.53 16 19 C 0.14 1.07 11.52 84.27 0.97 2.05 16 20 N -0.42 -3.25 7.29 -56.31 -0.41 -3.66 16 21 H 0.47 -0.41 8.96 -213.43 -1.91 -2.32 16 22 N -0.20 -3.53 12.63 -54.23 -0.69 -4.22 16 23 C -0.44 -9.11 7.26 85.65 0.62 -8.49 16 24 S 2.74 63.72 6.27 -56.49 -0.35 63.36 16 25 N -1.23 -17.10 9.55 37.02 0.35 -16.75 16 26 O -0.99 -28.35 18.02 -128.00 -2.31 -30.66 16 27 O -0.94 -30.20 14.01 -118.25 -1.66 -31.86 16 28 C -0.14 -3.79 7.58 31.12 0.24 -3.55 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.37 19.42 7.92 -92.71 -0.73 18.69 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 5.30 7.62 -92.71 -0.71 4.59 16 34 H 0.25 -0.74 7.46 -2.91 -0.02 -0.76 16 35 H 0.43 3.78 8.92 -96.75 -0.86 2.92 16 36 H 0.43 4.35 8.96 -96.75 -0.87 3.48 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.49 8.12 -2.39 -0.02 2.47 16 Total: -1.00 -89.85 340.97 -6.14 -95.99 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -3.89 Total: 21.94 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.32 Total: -12.02 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -4.52 Total: -136.03 kcal Atomic # 8 Polarization: -76.43 SS G_CDS: -3.72 Total: -80.14 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 63.72 SS G_CDS: -0.35 Total: 63.36 kcal Total: -89.85 -6.14 -95.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020570485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.469 kcal (2) G-P(sol) polarization free energy of solvation -89.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds