Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48499 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47283 * 299.99974 * 3 2 1 6 6 H 1.48496 * 109.47354 * 59.99938 * 3 2 1 7 7 C 1.38808 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00234 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00014 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85037 * 336.19769 * 10 9 7 12 12 C 1.53783 * 113.61354 * 107.50735 * 10 9 7 13 13 C 1.53783 * 87.08057 * 139.97795 * 12 10 9 14 14 H 1.08998 * 113.69018 * 220.00699 * 13 12 10 15 15 N 1.46499 * 113.61374 * 89.11694 * 13 12 10 16 16 C 1.34777 * 119.99893 * 107.50279 * 15 13 12 17 17 O 1.21526 * 119.99921 * 359.97438 * 16 15 13 18 18 C 1.48019 * 119.99555 * 179.97438 * 16 15 13 19 19 C 1.39465 * 119.92703 * 0.02562 * 18 16 15 20 20 C 1.38442 * 120.30782 * 179.97438 * 19 18 16 21 21 C 1.38590 * 119.90173 * 359.97438 * 20 19 18 22 22 C 1.40989 * 120.06276 * 359.97438 * 21 20 19 23 23 C 1.38435 * 119.95683 * 0.02562 * 22 21 20 24 24 C 1.47827 * 105.89455 * 180.23913 * 22 21 20 25 25 O 1.21446 * 125.69517 * 179.73065 * 24 22 21 26 26 N 1.34510 * 108.61720 * 359.62308 * 24 22 21 27 27 C 1.34508 * 111.10864 * 0.38987 * 26 24 22 28 28 O 1.21424 * 125.72758 * 179.77024 * 27 26 24 29 29 C 1.53777 * 87.08270 * 334.56561 * 13 12 10 30 30 H 0.97000 * 120.00665 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99707 * 0.02562 * 9 7 2 32 32 H 1.09005 * 113.61266 * 25.43207 * 12 10 9 33 33 H 1.08992 * 113.61211 * 254.52752 * 12 10 9 34 34 H 0.96999 * 119.99792 * 287.49885 * 15 13 12 35 35 H 1.08002 * 119.84386 * 359.97438 * 19 18 16 36 36 H 1.07997 * 120.04952 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.18703 * 179.97438 * 23 22 21 38 38 H 0.96997 * 124.44412 * 180.13438 * 26 24 22 39 39 H 1.09009 * 113.61656 * 139.97888 * 29 13 12 40 40 H 1.09000 * 113.61959 * 270.79874 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0657 -3.5637 -0.4059 12 6 1.9992 -4.4022 1.3433 13 6 1.8481 -5.6976 0.5284 14 1 1.1340 -6.4022 0.9544 15 7 3.1258 -6.3237 0.1794 16 6 3.5107 -7.4586 0.7959 17 8 2.7982 -7.9624 1.6417 18 6 4.8014 -8.0915 0.4428 19 6 5.6181 -7.5116 -0.5276 20 6 6.8271 -8.0965 -0.8636 21 6 7.2290 -9.2634 -0.2330 22 6 6.4083 -9.8538 0.7497 23 6 5.1998 -9.2676 1.0844 24 6 7.1308 -11.0586 1.2100 25 8 6.7450 -11.8342 2.0612 26 7 8.2857 -11.1539 0.5270 27 6 8.4214 -10.1344 -0.3398 28 8 9.3635 -9.9581 -1.0852 29 6 1.2603 -4.8288 -0.5961 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.1208 -4.1570 1.9403 33 1 2.9272 -4.3501 1.9125 34 1 3.6947 -5.9213 -0.4955 35 1 5.3060 -6.6021 -1.0193 36 1 7.4561 -7.6442 -1.6160 37 1 4.5680 -9.7169 1.8363 38 1 8.9370 -11.8626 0.6468 39 1 1.5919 -5.1211 -1.5925 40 1 0.1798 -4.7015 -0.5301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020945347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -15.538149 kcal Electronic energy + Delta-G solvation = -26127.035148 eV Core-core repulsion = 22101.842065 eV Total energy + Delta-G solvation = -4025.193083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.76903 -40.50141 -39.18312 -38.83247 -37.78690 -36.18381 -34.27262 -33.00207 -31.79687 -31.60354 -29.90115 -26.13106 -25.39182 -25.22773 -24.37752 -23.30759 -22.29267 -21.14169 -20.97698 -19.17893 -18.53620 -18.42534 -17.65613 -17.14503 -16.96709 -16.43778 -15.97035 -15.67786 -15.41467 -15.10031 -14.88369 -14.61042 -14.55868 -14.52511 -13.94321 -13.71948 -13.52504 -13.19222 -12.77885 -12.40487 -12.23434 -11.95717 -11.73026 -11.20746 -11.00739 -10.97471 -10.96814 -10.86488 -10.44326 -10.30934 -10.17492 -9.98822 -9.89290 -9.83232 -9.65621 -9.03728 -8.93160 -7.05662 -5.86428 -3.15934 -0.70171 0.28501 1.18633 1.99313 2.36923 2.48012 2.74171 3.11894 3.21777 3.37216 3.42872 3.45313 3.66820 3.95692 4.19470 4.34159 4.51749 4.55119 4.61014 4.91436 5.09033 5.15390 5.23377 5.28618 5.34259 5.40701 5.42434 5.50619 5.77253 5.78554 5.79650 5.91699 6.00966 6.15424 6.21963 6.33404 6.51768 6.57450 6.57918 6.95705 7.16094 7.31164 7.61218 7.95715 8.31658 9.43235 9.99807 10.33783 11.35755 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002161 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.634681 B =12955.814444 C =13893.572379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.074 0.926 12 C -0.176 4.176 13 C 0.114 3.886 14 H 0.100 0.900 15 N -0.696 5.696 16 C 0.556 3.444 17 O -0.527 6.527 18 C -0.102 4.102 19 C -0.061 4.061 20 C -0.047 4.047 21 C -0.123 4.123 22 C -0.150 4.150 23 C 0.012 3.988 24 C 0.581 3.419 25 O -0.457 6.457 26 N -0.679 5.679 27 C 0.579 3.421 28 O -0.459 6.459 29 C -0.159 4.159 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.400 0.600 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.431 0.569 39 H 0.065 0.935 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 -21.215 -2.442 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.218 4.218 13 C 0.009 3.991 14 H 0.118 0.882 15 N -0.347 5.347 16 C 0.341 3.659 17 O -0.404 6.404 18 C -0.106 4.106 19 C -0.079 4.079 20 C -0.065 4.065 21 C -0.127 4.127 22 C -0.154 4.154 23 C -0.007 4.007 24 C 0.368 3.632 25 O -0.327 6.327 26 N -0.346 5.346 27 C 0.366 3.634 28 O -0.329 6.329 29 C -0.199 4.199 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.274 0.726 39 H 0.084 0.916 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.040 -21.610 -1.807 25.834 hybrid contribution 0.786 0.806 -0.216 1.147 sum 14.826 -20.803 -2.023 25.626 Atomic orbital electron populations 1.69663 1.05155 1.25766 1.57221 1.24780 0.95535 0.97865 1.02627 0.86121 0.78773 0.84024 0.77246 1.20523 1.21808 1.21793 1.19317 0.91065 0.84173 1.43214 0.91046 1.42406 1.05807 0.99833 1.86908 1.21627 0.95057 0.85278 0.92648 0.90847 1.24335 1.02227 0.94896 1.00359 1.21918 0.84356 0.94308 0.98539 0.88233 1.45630 1.22351 1.25076 1.41611 1.18023 0.85139 0.80881 0.81826 1.90814 1.54237 1.63304 1.32022 1.20268 0.95939 0.96285 0.98081 1.21715 0.92646 0.99077 0.94502 1.20742 0.95528 0.92280 0.97975 1.20677 0.95492 0.97389 0.99129 1.20362 0.97085 0.97496 1.00457 1.20802 0.92554 0.91555 0.95801 1.18223 0.80414 0.84624 0.79908 1.90884 1.68957 1.44697 1.28149 1.44425 1.23037 1.28228 1.38932 1.18330 0.85854 0.80511 0.78671 1.90870 1.33856 1.72067 1.36143 1.23883 1.01824 0.97102 0.97076 0.93411 0.77960 0.89349 0.92280 0.76377 0.83260 0.83042 0.82537 0.72623 0.91648 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.49 9.97 -15.06 -0.15 -6.64 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -16.62 5.40 -52.64 -0.28 -16.91 16 10 C 0.17 2.89 4.36 -67.12 -0.29 2.60 16 11 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.18 -2.81 7.68 -25.92 -0.20 -3.01 16 13 C 0.11 1.50 4.32 -67.12 -0.29 1.21 16 14 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 15 N -0.70 -7.35 5.21 -53.91 -0.28 -7.63 16 16 C 0.56 6.34 7.78 -12.25 -0.10 6.25 16 17 O -0.53 -7.98 15.94 5.34 0.09 -7.89 16 18 C -0.10 -0.86 5.88 -104.86 -0.62 -1.48 16 19 C -0.06 -0.35 9.54 -39.05 -0.37 -0.72 16 20 C -0.05 -0.26 10.08 -39.38 -0.40 -0.66 16 21 C -0.12 -0.87 6.41 -104.70 -0.67 -1.55 16 22 C -0.15 -1.20 6.39 -104.86 -0.67 -1.87 16 23 C 0.01 0.11 9.63 -38.94 -0.37 -0.27 16 24 C 0.58 4.82 8.45 -12.46 -0.11 4.72 16 25 O -0.46 -5.07 18.04 5.41 0.10 -4.97 16 26 N -0.68 -4.24 5.76 -13.18 -0.08 -4.31 16 27 C 0.58 4.40 8.47 -12.36 -0.10 4.29 16 28 O -0.46 -4.59 18.04 5.43 0.10 -4.49 16 29 C -0.16 -2.22 7.58 -25.92 -0.20 -2.42 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.39 9.65 7.93 -40.82 -0.32 9.33 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.15 6.71 -40.82 -0.27 2.87 16 35 H 0.15 0.51 6.36 -52.49 -0.33 0.18 16 36 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.16 1.43 7.65 -52.49 -0.40 1.03 16 38 H 0.43 1.65 8.96 -40.82 -0.37 1.29 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.09 1.37 8.12 -51.93 -0.42 0.95 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -33.89 354.25 -8.12 -42.00 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -4.17 Total: 8.71 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -4.63 Total: 0.04 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.08 Total: -55.28 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.28 Total: -17.35 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.89 -8.12 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020945347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.466 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds