Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48499 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47283 * 299.99974 * 3 2 1 6 6 H 1.48496 * 109.47354 * 59.99938 * 3 2 1 7 7 C 1.38808 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00234 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00014 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85037 * 336.19769 * 10 9 7 12 12 C 1.53783 * 113.61354 * 107.50735 * 10 9 7 13 13 C 1.53783 * 87.08057 * 139.97795 * 12 10 9 14 14 H 1.08998 * 113.69018 * 220.00699 * 13 12 10 15 15 N 1.46499 * 113.61374 * 89.11694 * 13 12 10 16 16 C 1.34777 * 119.99893 * 107.50279 * 15 13 12 17 17 O 1.21526 * 119.99921 * 359.97438 * 16 15 13 18 18 C 1.48019 * 119.99555 * 179.97438 * 16 15 13 19 19 C 1.39465 * 119.92703 * 0.02562 * 18 16 15 20 20 C 1.38442 * 120.30782 * 179.97438 * 19 18 16 21 21 C 1.38590 * 119.90173 * 359.97438 * 20 19 18 22 22 C 1.40989 * 120.06276 * 359.97438 * 21 20 19 23 23 C 1.38435 * 119.95683 * 0.02562 * 22 21 20 24 24 C 1.47827 * 105.89455 * 180.23913 * 22 21 20 25 25 O 1.21446 * 125.69517 * 179.73065 * 24 22 21 26 26 N 1.34510 * 108.61720 * 359.62308 * 24 22 21 27 27 C 1.34508 * 111.10864 * 0.38987 * 26 24 22 28 28 O 1.21424 * 125.72758 * 179.77024 * 27 26 24 29 29 C 1.53777 * 87.08270 * 334.56561 * 13 12 10 30 30 H 0.97000 * 120.00665 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99707 * 0.02562 * 9 7 2 32 32 H 1.09005 * 113.61266 * 25.43207 * 12 10 9 33 33 H 1.08992 * 113.61211 * 254.52752 * 12 10 9 34 34 H 0.96999 * 119.99792 * 287.49885 * 15 13 12 35 35 H 1.08002 * 119.84386 * 359.97438 * 19 18 16 36 36 H 1.07997 * 120.04952 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.18703 * 179.97438 * 23 22 21 38 38 H 0.96997 * 124.44412 * 180.13438 * 26 24 22 39 39 H 1.09009 * 113.61656 * 139.97888 * 29 13 12 40 40 H 1.09000 * 113.61959 * 270.79874 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0657 -3.5637 -0.4059 12 6 1.9992 -4.4022 1.3433 13 6 1.8481 -5.6976 0.5284 14 1 1.1340 -6.4022 0.9544 15 7 3.1258 -6.3237 0.1794 16 6 3.5107 -7.4586 0.7959 17 8 2.7982 -7.9624 1.6417 18 6 4.8014 -8.0915 0.4428 19 6 5.6181 -7.5116 -0.5276 20 6 6.8271 -8.0965 -0.8636 21 6 7.2290 -9.2634 -0.2330 22 6 6.4083 -9.8538 0.7497 23 6 5.1998 -9.2676 1.0844 24 6 7.1308 -11.0586 1.2100 25 8 6.7450 -11.8342 2.0612 26 7 8.2857 -11.1539 0.5270 27 6 8.4214 -10.1344 -0.3398 28 8 9.3635 -9.9581 -1.0852 29 6 1.2603 -4.8288 -0.5961 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.1208 -4.1570 1.9403 33 1 2.9272 -4.3501 1.9125 34 1 3.6947 -5.9213 -0.4955 35 1 5.3060 -6.6021 -1.0193 36 1 7.4561 -7.6442 -1.6160 37 1 4.5680 -9.7169 1.8363 38 1 8.9370 -11.8626 0.6468 39 1 1.5919 -5.1211 -1.5925 40 1 0.1798 -4.7015 -0.5301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020945347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -41.453706 kcal Electronic energy + Delta-G solvation = -26128.158931 eV Core-core repulsion = 22101.842065 eV Total energy + Delta-G solvation = -4026.316866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39453 -41.44603 -39.89603 -39.79548 -38.74365 -36.87130 -35.79604 -34.33358 -32.54604 -32.32267 -31.54961 -27.00448 -26.50436 -26.30670 -25.68720 -24.06354 -23.62852 -21.97886 -21.59775 -20.41638 -19.37966 -19.16337 -18.95635 -18.24713 -17.61186 -17.41213 -16.77215 -16.71284 -16.40782 -16.13849 -15.89149 -15.72810 -15.40937 -15.29223 -15.16892 -15.10798 -14.26001 -14.21725 -13.88755 -13.47547 -13.38848 -13.28044 -13.02384 -12.83084 -12.56369 -12.07927 -11.85823 -11.82425 -11.71756 -11.69869 -11.62944 -11.19078 -11.16367 -10.81826 -10.51832 -10.40882 -10.04577 -8.95150 -7.91958 -5.19850 -1.31981 -0.31484 0.56704 1.41472 1.50512 1.51302 1.60582 1.67254 1.78671 1.90809 2.46898 2.54099 2.59280 3.05125 3.40129 3.40337 3.47779 3.72413 3.81629 3.87091 3.97046 4.00779 4.09018 4.37262 4.37895 4.60235 4.68740 4.72757 4.79247 4.88335 4.94363 4.96721 5.00999 5.16382 5.20101 5.24115 5.26539 5.37191 5.54825 5.71349 5.94403 6.30439 6.45496 6.58371 7.09765 7.36869 8.14674 8.35391 9.31535 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002161 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.634681 B =12955.814444 C =13893.572379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.300 1.300 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.728 5.728 10 C 0.152 3.848 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.134 3.866 14 H 0.093 0.907 15 N -0.685 5.685 16 C 0.558 3.442 17 O -0.570 6.570 18 C -0.112 4.112 19 C -0.039 4.039 20 C -0.035 4.035 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.006 3.994 24 C 0.586 3.414 25 O -0.490 6.490 26 N -0.667 5.667 27 C 0.587 3.413 28 O -0.480 6.480 29 C -0.142 4.142 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.417 0.583 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.143 0.857 38 H 0.442 0.558 39 H 0.092 0.908 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.560 -21.410 -4.095 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.227 1.227 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.365 5.365 10 C 0.042 3.958 11 H 0.108 0.892 12 C -0.216 4.216 13 C 0.028 3.972 14 H 0.111 0.889 15 N -0.336 5.336 16 C 0.346 3.654 17 O -0.450 6.450 18 C -0.115 4.115 19 C -0.058 4.058 20 C -0.053 4.053 21 C -0.125 4.125 22 C -0.163 4.163 23 C -0.014 4.014 24 C 0.375 3.625 25 O -0.363 6.363 26 N -0.334 5.334 27 C 0.375 3.625 28 O -0.352 6.352 29 C -0.182 4.182 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.256 0.744 35 H 0.199 0.801 36 H 0.199 0.801 37 H 0.160 0.840 38 H 0.287 0.713 39 H 0.110 0.890 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.442 -21.855 -3.486 27.570 hybrid contribution 0.132 0.770 0.303 0.838 sum 16.574 -21.085 -3.183 27.008 Atomic orbital electron populations 1.69813 1.06652 1.25864 1.59839 1.25553 0.96314 1.01135 1.04106 0.85130 0.78507 0.80137 0.76343 1.18636 1.22292 1.22718 1.19753 0.91668 0.85228 1.40319 0.90035 1.42634 1.05485 1.01156 1.87248 1.22031 0.95910 0.83864 0.93987 0.89215 1.24178 1.01381 0.96480 0.99609 1.21547 0.85414 0.93066 0.97198 0.88903 1.45445 1.21605 1.24781 1.41815 1.18402 0.85631 0.80515 0.80864 1.90802 1.55774 1.64457 1.33976 1.19996 0.95211 0.96572 0.99739 1.22019 0.91729 0.99324 0.92704 1.21091 0.95387 0.91199 0.97618 1.20782 0.94871 0.97903 0.98938 1.20244 0.97171 0.97644 1.01224 1.20712 0.92775 0.92014 0.95902 1.18300 0.80640 0.84291 0.79276 1.90871 1.69782 1.45893 1.29708 1.44294 1.22637 1.28298 1.38127 1.18333 0.85546 0.80453 0.78141 1.90871 1.34691 1.72589 1.37050 1.23686 1.01002 0.94953 0.98553 0.94191 0.79463 0.91343 0.92311 0.74399 0.80121 0.80109 0.83961 0.71336 0.88959 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -12.30 9.97 84.03 0.84 -11.46 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.73 -33.64 5.40 -320.44 -1.73 -35.37 16 10 C 0.15 5.00 4.36 45.52 0.20 5.20 16 11 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 12 C -0.17 -5.39 7.68 31.12 0.24 -5.15 16 13 C 0.13 3.29 4.32 45.52 0.20 3.48 16 14 H 0.09 2.51 7.46 -2.39 -0.02 2.49 16 15 N -0.68 -12.50 5.21 -442.75 -2.31 -14.80 16 16 C 0.56 11.77 7.78 86.84 0.68 12.45 16 17 O -0.57 -17.13 15.94 -3.80 -0.06 -17.19 16 18 C -0.11 -1.64 5.88 -20.02 -0.12 -1.76 16 19 C -0.04 -0.29 9.54 22.61 0.22 -0.07 16 20 C -0.03 -0.24 10.08 22.40 0.23 -0.02 16 21 C -0.12 -1.40 6.41 -19.92 -0.13 -1.53 16 22 C -0.16 -2.35 6.39 -20.02 -0.13 -2.48 16 23 C 0.01 0.09 9.63 22.69 0.22 0.31 16 24 C 0.59 9.40 8.45 86.82 0.73 10.14 16 25 O -0.49 -11.00 18.04 -3.55 -0.06 -11.06 16 26 N -0.67 -7.48 5.76 -432.58 -2.49 -9.98 16 27 C 0.59 7.71 8.47 86.89 0.74 8.44 16 28 O -0.48 -8.56 18.04 -3.48 -0.06 -8.62 16 29 C -0.14 -3.66 7.58 31.12 0.24 -3.43 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.37 18.90 7.93 -92.71 -0.73 18.17 16 32 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.42 4.73 6.71 -92.71 -0.62 4.11 16 35 H 0.18 0.19 6.36 -2.91 -0.02 0.17 16 36 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.14 2.73 7.65 -2.91 -0.02 2.71 16 38 H 0.44 2.89 8.96 -92.71 -0.83 2.06 16 39 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.09 2.40 8.12 -2.39 -0.02 2.39 16 Total: -1.00 -74.79 354.25 -0.84 -75.63 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -1.04 Total: 22.24 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.61 Total: 10.24 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.25 Total: -117.55 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.19 Total: -36.87 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.79 -0.84 -75.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020945347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.180 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds