Wall clock time and date at job start Tue Mar 31 2020 05:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46846 * 270.00214 * 3 2 1 5 5 H 1.48495 * 109.46861 * 29.99964 * 3 2 1 6 6 H 1.48497 * 109.46854 * 150.00236 * 3 2 1 7 7 C 1.38815 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00577 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99286 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99755 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84616 * 26.82741 * 10 9 7 12 12 C 1.53782 * 113.61804 * 158.02591 * 10 9 7 13 13 C 1.53776 * 87.08012 * 89.11593 * 12 10 9 14 14 H 1.09000 * 113.61417 * 140.06877 * 13 12 10 15 15 N 1.46507 * 113.61523 * 270.88381 * 13 12 10 16 16 C 1.34771 * 119.99914 * 276.17076 * 15 13 12 17 17 O 1.21603 * 120.00596 * 359.97438 * 16 15 13 18 18 C 1.47432 * 119.99977 * 180.02562 * 16 15 13 19 19 C 1.38043 * 126.41283 * 0.02562 * 18 16 15 20 20 N 1.34255 * 107.41865 * 179.97438 * 19 18 16 21 21 H 0.97007 * 125.75808 * 180.02562 * 20 19 18 22 22 N 1.39933 * 108.49153 * 359.78788 * 20 19 18 23 23 C 1.30445 * 108.89447 * 0.36464 * 22 20 19 24 24 S 1.76205 * 125.98691 * 179.90799 * 23 22 20 25 25 N 1.65595 * 107.22014 * 29.68864 * 24 23 22 26 26 O 1.42102 * 106.39995 * 276.14964 * 24 23 22 27 27 O 1.42098 * 106.40441 * 143.23196 * 24 23 22 28 28 C 1.53777 * 87.08477 * 25.43533 * 13 12 10 29 29 H 0.96993 * 120.00351 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00432 * 359.97438 * 9 7 2 31 31 H 1.09004 * 113.60796 * 334.57012 * 12 10 9 32 32 H 1.08994 * 113.69366 * 203.67964 * 12 10 9 33 33 H 0.97003 * 119.99584 * 96.17161 * 15 13 12 34 34 H 1.08001 * 126.29361 * 359.96373 * 19 18 16 35 35 H 0.97001 * 120.00399 * 240.00172 * 25 24 23 36 36 H 0.96999 * 120.00010 * 60.00255 * 25 24 23 37 37 H 1.08996 * 113.61372 * 89.11179 * 28 13 12 38 38 H 1.09004 * 113.61685 * 220.01845 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5477 -3.2854 -0.4537 12 6 5.5520 -2.3509 -0.5267 13 6 5.9725 -2.0468 0.9209 14 1 6.9112 -2.5187 1.2112 15 7 5.9236 -0.6221 1.2593 16 6 6.9632 0.1791 0.9536 17 8 7.9421 -0.2803 0.3974 18 6 6.9142 1.6126 1.2947 19 6 5.8764 2.2702 1.9240 20 7 6.2320 3.5591 2.0451 21 1 5.6966 4.2592 2.4504 22 7 7.5075 3.7214 1.4931 23 6 7.9209 2.5705 1.0392 24 16 9.4671 2.2628 0.2522 25 7 10.5574 3.3426 0.8745 26 8 9.2967 2.6078 -1.1158 27 8 9.8872 0.9753 0.6824 28 6 4.7248 -2.8285 1.3645 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0004 31 1 5.6989 -1.5136 -1.2090 32 1 5.9570 -3.2867 -0.9116 33 1 5.1429 -0.2557 1.7034 34 1 4.9487 1.8290 2.2574 35 1 11.0051 3.9724 0.2880 36 1 10.7485 3.3454 1.8254 37 1 4.9024 -3.8957 1.4971 38 1 4.2038 -2.3769 2.2088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022689034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:01 Heat of formation + Delta-G solvation = 12.062147 kcal Electronic energy + Delta-G solvation = -26881.491611 eV Core-core repulsion = 22889.398974 eV Total energy + Delta-G solvation = -3992.092637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.79691 -39.78535 -37.83136 -37.11336 -35.81061 -33.83763 -33.45745 -32.86875 -32.36143 -30.88626 -30.21732 -25.30796 -24.84277 -23.64922 -23.49263 -22.07860 -20.36045 -19.48563 -19.35374 -18.43593 -17.70818 -17.65547 -17.37252 -16.58535 -16.35527 -15.78821 -15.59973 -15.07354 -14.92749 -14.65594 -14.24803 -13.95131 -13.78064 -13.44462 -12.80120 -12.30933 -12.21452 -12.09591 -12.02958 -11.98592 -11.88521 -11.76180 -11.58128 -11.11524 -10.96369 -10.76835 -10.62689 -10.47086 -10.36663 -9.90413 -9.72204 -9.62707 -9.28540 -9.09424 -8.64507 -7.42762 -5.92132 -3.27998 0.23728 1.05650 1.26252 2.19336 2.98736 3.01449 3.20026 3.26229 3.30937 3.36812 3.58222 4.15358 4.38619 4.52668 4.67117 4.89520 4.92401 5.06288 5.09632 5.27149 5.33920 5.55647 5.68444 5.74339 5.74604 6.09759 6.14879 6.30899 6.48784 6.49882 6.55495 6.68977 6.69782 6.84061 6.93476 7.68418 7.87592 8.28136 8.38643 9.05509 9.77252 9.97979 11.26177 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004761 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.035632 B = 5879.270469 C = 7101.746306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.094 0.906 9 N -0.731 5.731 10 C 0.168 3.832 11 H 0.073 0.927 12 C -0.169 4.169 13 C 0.126 3.874 14 H 0.088 0.912 15 N -0.701 5.701 16 C 0.573 3.427 17 O -0.508 6.508 18 C -0.212 4.212 19 C 0.109 3.891 20 N -0.442 5.442 21 H 0.450 0.550 22 N -0.199 5.199 23 C -0.427 4.427 24 S 2.727 3.273 25 N -1.241 6.241 26 O -0.946 6.946 27 O -0.900 6.900 28 C -0.175 4.175 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.200 0.800 35 H 0.421 0.579 36 H 0.418 0.582 37 H 0.089 0.911 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.456 6.744 7.846 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.373 4.373 8 H 0.112 0.888 9 N -0.372 5.372 10 C 0.057 3.943 11 H 0.091 0.909 12 C -0.209 4.209 13 C 0.022 3.978 14 H 0.106 0.894 15 N -0.354 5.354 16 C 0.358 3.642 17 O -0.384 6.384 18 C -0.228 4.228 19 C -0.043 4.043 20 N -0.151 5.151 21 H 0.296 0.704 22 N -0.025 5.025 23 C -0.674 4.674 24 S 2.803 3.197 25 N -0.914 5.914 26 O -0.935 6.935 27 O -0.888 6.888 28 C -0.216 4.216 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.237 0.763 34 H 0.217 0.783 35 H 0.251 0.749 36 H 0.245 0.755 37 H 0.107 0.893 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.132 6.794 6.870 20.546 hybrid contribution -0.930 1.814 1.085 2.309 sum 17.202 8.608 7.955 20.816 Atomic orbital electron populations 1.69681 1.04965 1.25774 1.57321 1.24674 0.95191 0.96946 1.02245 0.86653 0.78173 0.85515 0.78248 1.20978 1.21747 1.20966 1.19159 0.80392 0.94920 1.42835 0.88794 1.42611 1.03908 1.01760 1.88949 1.21160 0.90513 0.89797 0.92829 0.90908 1.23859 0.98408 1.02223 0.96367 1.21820 0.99107 0.79911 0.96987 0.89428 1.45609 1.19222 1.09208 1.61339 1.17238 0.83442 0.83886 0.79668 1.90952 1.31054 1.75177 1.41179 1.20050 0.95247 0.95438 1.12093 1.23578 0.99530 0.84784 0.96407 1.46416 1.14519 1.09075 1.45085 0.70408 1.77033 0.93780 1.19883 1.11757 1.35539 1.22832 0.95786 1.13236 1.01713 0.71724 0.73206 0.73105 1.53313 1.60063 1.57457 1.20610 1.93631 1.85575 1.84128 1.30135 1.93740 1.78481 1.34562 1.82000 1.24091 0.95990 0.99461 1.02052 0.92956 0.80540 0.91247 0.89078 0.76257 0.78299 0.74898 0.75470 0.89285 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.97 55.49 0.78 -26.96 16 2 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 20.17 27.74 -169.99 -4.71 15.46 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -5.39 5.25 56.52 0.30 -5.10 16 7 C -0.24 -6.40 10.46 -15.06 -0.16 -6.56 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.73 -16.00 4.83 -52.63 -0.25 -16.25 16 10 C 0.17 3.05 4.55 -67.11 -0.31 2.75 16 11 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 12 C -0.17 -2.77 7.62 -25.92 -0.20 -2.97 16 13 C 0.13 1.97 3.98 -67.12 -0.27 1.70 16 14 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 15 N -0.70 -11.20 4.29 -54.09 -0.23 -11.43 16 16 C 0.57 9.98 7.81 -12.52 -0.10 9.89 16 17 O -0.51 -10.20 13.37 -18.55 -0.25 -10.45 16 18 C -0.21 -3.25 6.12 -105.07 -0.64 -3.89 16 19 C 0.11 1.32 11.19 -16.56 -0.19 1.14 16 20 N -0.44 -4.56 7.29 30.85 0.22 -4.33 16 21 H 0.45 2.79 8.96 -182.72 -1.64 1.15 16 22 N -0.20 -2.44 12.63 31.51 0.40 -2.05 16 23 C -0.43 -6.10 7.25 -16.98 -0.12 -6.22 16 24 S 2.73 37.08 5.95 -107.50 -0.64 36.44 16 25 N -1.24 -9.55 9.52 60.35 0.57 -8.97 16 26 O -0.95 -15.83 18.02 -57.17 -1.03 -16.86 16 27 O -0.90 -14.98 15.02 -66.89 -1.01 -15.99 16 28 C -0.17 -2.62 7.57 -25.92 -0.20 -2.81 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 30 H 0.36 7.73 4.27 -40.82 -0.17 7.55 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.40 6.01 6.82 -40.82 -0.28 5.73 16 34 H 0.20 1.99 6.57 -52.49 -0.34 1.65 16 35 H 0.42 2.35 8.96 -34.47 -0.31 2.04 16 36 H 0.42 2.20 8.96 -34.47 -0.31 1.90 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -38.21 333.80 -8.64 -46.84 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -5.25 Total: 16.45 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.27 Total: -6.94 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: 1.49 Total: -69.99 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -2.28 Total: -43.30 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.71 Total: 15.46 kcal Atomic # 16 Polarization: 37.08 SS G_CDS: -0.64 Total: 36.44 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.21 -8.64 -46.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022689034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.905 kcal (2) G-P(sol) polarization free energy of solvation -38.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds