Wall clock time and date at job start Tue Mar 31 2020 05:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46846 * 270.00214 * 3 2 1 5 5 H 1.48495 * 109.46861 * 29.99964 * 3 2 1 6 6 H 1.48497 * 109.46854 * 150.00236 * 3 2 1 7 7 C 1.38815 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00577 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99286 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99755 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84616 * 26.82741 * 10 9 7 12 12 C 1.53782 * 113.61804 * 158.02591 * 10 9 7 13 13 C 1.53776 * 87.08012 * 89.11593 * 12 10 9 14 14 H 1.09000 * 113.61417 * 140.06877 * 13 12 10 15 15 N 1.46507 * 113.61523 * 270.88381 * 13 12 10 16 16 C 1.34771 * 119.99914 * 276.17076 * 15 13 12 17 17 O 1.21603 * 120.00596 * 359.97438 * 16 15 13 18 18 C 1.47432 * 119.99977 * 180.02562 * 16 15 13 19 19 C 1.38043 * 126.41283 * 0.02562 * 18 16 15 20 20 N 1.34255 * 107.41865 * 179.97438 * 19 18 16 21 21 H 0.97007 * 125.75808 * 180.02562 * 20 19 18 22 22 N 1.39933 * 108.49153 * 359.78788 * 20 19 18 23 23 C 1.30445 * 108.89447 * 0.36464 * 22 20 19 24 24 S 1.76205 * 125.98691 * 179.90799 * 23 22 20 25 25 N 1.65595 * 107.22014 * 29.68864 * 24 23 22 26 26 O 1.42102 * 106.39995 * 276.14964 * 24 23 22 27 27 O 1.42098 * 106.40441 * 143.23196 * 24 23 22 28 28 C 1.53777 * 87.08477 * 25.43533 * 13 12 10 29 29 H 0.96993 * 120.00351 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00432 * 359.97438 * 9 7 2 31 31 H 1.09004 * 113.60796 * 334.57012 * 12 10 9 32 32 H 1.08994 * 113.69366 * 203.67964 * 12 10 9 33 33 H 0.97003 * 119.99584 * 96.17161 * 15 13 12 34 34 H 1.08001 * 126.29361 * 359.96373 * 19 18 16 35 35 H 0.97001 * 120.00399 * 240.00172 * 25 24 23 36 36 H 0.96999 * 120.00010 * 60.00255 * 25 24 23 37 37 H 1.08996 * 113.61372 * 89.11179 * 28 13 12 38 38 H 1.09004 * 113.61685 * 220.01845 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5477 -3.2854 -0.4537 12 6 5.5520 -2.3509 -0.5267 13 6 5.9725 -2.0468 0.9209 14 1 6.9112 -2.5187 1.2112 15 7 5.9236 -0.6221 1.2593 16 6 6.9632 0.1791 0.9536 17 8 7.9421 -0.2803 0.3974 18 6 6.9142 1.6126 1.2947 19 6 5.8764 2.2702 1.9240 20 7 6.2320 3.5591 2.0451 21 1 5.6966 4.2592 2.4504 22 7 7.5075 3.7214 1.4931 23 6 7.9209 2.5705 1.0392 24 16 9.4671 2.2628 0.2522 25 7 10.5574 3.3426 0.8745 26 8 9.2967 2.6078 -1.1158 27 8 9.8872 0.9753 0.6824 28 6 4.7248 -2.8285 1.3645 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0004 31 1 5.6989 -1.5136 -1.2090 32 1 5.9570 -3.2867 -0.9116 33 1 5.1429 -0.2557 1.7034 34 1 4.9487 1.8290 2.2574 35 1 11.0051 3.9724 0.2880 36 1 10.7485 3.3454 1.8254 37 1 4.9024 -3.8957 1.4971 38 1 4.2038 -2.3769 2.2088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022689034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:59 Heat of formation + Delta-G solvation = -22.583504 kcal Electronic energy + Delta-G solvation = -26882.993959 eV Core-core repulsion = 22889.398974 eV Total energy + Delta-G solvation = -3993.594985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78652 -41.08024 -39.18432 -38.27106 -36.95932 -35.57478 -34.33219 -34.21882 -33.32529 -32.59755 -31.46974 -26.66953 -26.31730 -25.07272 -24.51742 -23.46740 -21.55337 -20.87579 -20.35585 -19.67287 -19.39979 -18.51144 -18.35492 -17.77599 -17.35821 -17.03068 -16.70142 -16.60947 -16.21486 -15.90076 -15.76982 -15.23516 -15.12592 -14.68985 -14.55385 -13.87149 -13.50706 -13.39147 -13.21664 -13.16722 -13.07263 -12.97126 -12.90303 -12.69988 -12.49255 -12.00154 -11.94285 -11.77722 -11.57075 -11.46254 -11.18437 -10.97923 -10.96690 -10.36500 -9.92877 -9.30442 -8.01316 -5.35571 -0.77103 0.08863 0.18023 1.17731 1.36067 1.41497 1.43280 2.04143 2.14000 2.16799 2.46367 2.56818 3.16117 3.28485 3.50572 3.62109 3.64044 3.73941 3.85733 3.91801 4.05054 4.24990 4.37684 4.53812 4.86789 4.94788 5.03159 5.07545 5.18415 5.25518 5.32854 5.57925 5.62968 5.83257 5.93369 6.23309 6.32715 6.46163 7.07433 7.14780 7.83454 8.03754 9.20000 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004761 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.035632 B = 5879.270469 C = 7101.746306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.945 3.055 4 H -0.303 1.303 5 H -0.287 1.287 6 H -0.229 1.229 7 C -0.228 4.228 8 H 0.060 0.940 9 N -0.733 5.733 10 C 0.147 3.853 11 H 0.065 0.935 12 C -0.162 4.162 13 C 0.126 3.874 14 H 0.097 0.903 15 N -0.698 5.698 16 C 0.568 3.432 17 O -0.543 6.543 18 C -0.248 4.248 19 C 0.123 3.877 20 N -0.422 5.422 21 H 0.470 0.530 22 N -0.191 5.191 23 C -0.441 4.441 24 S 2.743 3.257 25 N -1.215 6.215 26 O -0.984 6.984 27 O -0.936 6.936 28 C -0.151 4.151 29 H 0.257 0.743 30 H 0.365 0.635 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.406 0.594 34 H 0.226 0.774 35 H 0.434 0.566 36 H 0.432 0.568 37 H 0.120 0.880 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.047 8.009 9.526 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.772 3.228 4 H -0.231 1.231 5 H -0.213 1.213 6 H -0.153 1.153 7 C -0.359 4.359 8 H 0.078 0.922 9 N -0.375 5.375 10 C 0.038 3.962 11 H 0.084 0.916 12 C -0.202 4.202 13 C 0.022 3.978 14 H 0.115 0.885 15 N -0.351 5.351 16 C 0.354 3.646 17 O -0.421 6.421 18 C -0.265 4.265 19 C -0.030 4.030 20 N -0.133 5.133 21 H 0.320 0.680 22 N -0.018 5.018 23 C -0.689 4.689 24 S 2.819 3.181 25 N -0.896 5.896 26 O -0.973 6.973 27 O -0.924 6.924 28 C -0.191 4.191 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.064 0.936 32 H 0.135 0.865 33 H 0.243 0.757 34 H 0.242 0.758 35 H 0.267 0.733 36 H 0.263 0.737 37 H 0.138 0.862 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.783 8.058 8.598 23.026 hybrid contribution -1.450 1.364 0.561 2.069 sum 18.333 9.422 9.159 22.556 Atomic orbital electron populations 1.69879 1.07183 1.26566 1.59729 1.25472 0.96013 1.01073 1.02887 0.85627 0.79319 0.80193 0.77615 1.23073 1.21337 1.15294 1.19082 0.82326 0.93627 1.40854 0.92174 1.42522 1.02291 1.03410 1.89308 1.21458 0.91061 0.88159 0.95559 0.91641 1.23868 0.96927 1.02705 0.96665 1.21882 0.99747 0.80051 0.96146 0.88474 1.45608 1.19108 1.09322 1.61027 1.17578 0.83067 0.84874 0.79048 1.90933 1.32309 1.76042 1.42811 1.20052 0.97048 0.94765 1.14606 1.23866 0.99379 0.84992 0.94738 1.46476 1.13857 1.09232 1.43739 0.67959 1.76996 0.94579 1.18922 1.11254 1.35458 1.23129 0.96223 1.14063 1.00824 0.71925 0.73088 0.72266 1.52764 1.58349 1.56758 1.21686 1.93575 1.86287 1.84690 1.32760 1.93697 1.79136 1.37204 1.82365 1.23926 0.94527 1.01290 0.99399 0.93429 0.80111 0.93573 0.86471 0.75669 0.75814 0.73275 0.73672 0.86155 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.01 13.97 21.65 0.30 -59.71 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.94 40.71 27.74 68.60 1.90 42.62 16 4 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.23 -7.59 5.25 99.48 0.52 -7.07 16 7 C -0.23 -12.08 10.46 84.03 0.88 -11.21 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 N -0.73 -31.26 4.83 -320.43 -1.55 -32.81 16 10 C 0.15 5.12 4.55 45.52 0.21 5.33 16 11 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 12 C -0.16 -5.04 7.62 31.12 0.24 -4.81 16 13 C 0.13 3.63 3.98 45.51 0.18 3.82 16 14 H 0.10 2.67 8.07 -2.39 -0.02 2.66 16 15 N -0.70 -20.72 4.29 -443.30 -1.90 -22.62 16 16 C 0.57 18.94 7.81 86.67 0.68 19.62 16 17 O -0.54 -21.57 13.37 18.73 0.25 -21.32 16 18 C -0.25 -7.04 6.12 -20.15 -0.12 -7.17 16 19 C 0.12 2.51 11.19 84.28 0.94 3.46 16 20 N -0.42 -6.98 7.29 -56.32 -0.41 -7.39 16 21 H 0.47 3.64 8.96 -213.42 -1.91 1.73 16 22 N -0.19 -4.13 12.63 -54.24 -0.69 -4.82 16 23 C -0.44 -11.78 7.25 85.65 0.62 -11.15 16 24 S 2.74 72.56 5.95 -56.49 -0.34 72.22 16 25 N -1.21 -16.49 9.52 37.02 0.35 -16.13 16 26 O -0.98 -32.78 18.02 -128.00 -2.31 -35.09 16 27 O -0.94 -31.11 15.02 -118.71 -1.78 -32.89 16 28 C -0.15 -4.10 7.57 31.12 0.24 -3.87 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.36 14.86 4.27 -92.71 -0.40 14.46 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.41 10.92 6.82 -92.71 -0.63 10.29 16 34 H 0.23 3.31 6.57 -2.91 -0.02 3.30 16 35 H 0.43 3.95 8.96 -96.74 -0.87 3.08 16 36 H 0.43 3.57 8.96 -96.75 -0.87 2.70 16 37 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 Total: -1.00 -85.91 333.80 -5.51 -91.42 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -3.67 Total: 35.50 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.32 Total: -8.98 kcal Atomic # 7 Polarization: -139.59 SS G_CDS: -3.89 Total: -143.48 kcal Atomic # 8 Polarization: -85.46 SS G_CDS: -3.84 Total: -89.29 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.90 Total: 42.62 kcal Atomic # 16 Polarization: 72.56 SS G_CDS: -0.34 Total: 72.22 kcal Total: -85.91 -5.51 -91.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022689034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.833 kcal (2) G-P(sol) polarization free energy of solvation -85.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds