Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00317 * 2 1 4 4 H 1.48497 * 109.47038 * 270.00480 * 3 2 1 5 5 H 1.48504 * 109.46978 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.47493 * 150.00004 * 3 2 1 7 7 C 1.38823 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99514 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99883 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85256 * 314.82956 * 10 9 7 12 12 C 1.53773 * 113.61677 * 86.02363 * 10 9 7 13 13 C 1.53785 * 87.07949 * 89.20202 * 12 10 9 14 14 H 1.09003 * 113.61750 * 140.06912 * 13 12 10 15 15 N 1.46496 * 113.61611 * 270.88268 * 13 12 10 16 16 C 1.34772 * 120.00313 * 201.66424 * 15 13 12 17 17 O 1.21524 * 120.00182 * 0.02562 * 16 15 13 18 18 C 1.48017 * 120.00241 * 180.02562 * 16 15 13 19 19 C 1.39473 * 119.92172 * 359.97438 * 18 16 15 20 20 C 1.38442 * 120.30666 * 180.02562 * 19 18 16 21 21 C 1.38598 * 119.90474 * 359.97438 * 20 19 18 22 22 C 1.40990 * 120.05523 * 0.02562 * 21 20 19 23 23 C 1.38427 * 119.96146 * 359.97438 * 22 21 20 24 24 C 1.47830 * 105.88943 * 179.97438 * 22 21 20 25 25 O 1.21448 * 125.69450 * 179.97438 * 24 22 21 26 26 N 1.34509 * 108.61984 * 0.02562 * 24 22 21 27 27 C 1.34513 * 111.10776 * 359.97438 * 26 24 22 28 28 O 1.21423 * 125.72411 * 179.97438 * 27 26 24 29 29 C 1.53778 * 113.69131 * 183.56426 * 10 9 7 30 30 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00363 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.61491 * 334.65965 * 12 10 9 33 33 H 1.09003 * 113.69777 * 203.75897 * 12 10 9 34 34 H 0.97009 * 119.99930 * 21.67142 * 15 13 12 35 35 H 1.07990 * 119.84640 * 359.97438 * 19 18 16 36 36 H 1.08005 * 120.04936 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.19095 * 179.72711 * 23 22 21 38 38 H 0.96999 * 124.44675 * 180.02562 * 26 24 22 39 39 H 1.09001 * 113.61675 * 156.32775 * 29 10 9 40 40 H 1.08996 * 113.61826 * 25.42386 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.8830 -3.6694 -0.7129 12 6 2.4506 -4.1415 1.4050 13 6 1.0946 -4.8655 1.4484 14 1 1.1413 -5.8531 1.9072 15 7 0.0064 -4.0419 1.9811 16 6 -1.0979 -4.6279 2.4847 17 8 -1.1908 -5.8395 2.4974 18 6 -2.1976 -3.7958 3.0223 19 6 -2.0891 -2.4053 3.0075 20 6 -3.1126 -1.6193 3.5088 21 6 -4.2511 -2.2157 4.0276 22 6 -4.3667 -3.6207 4.0454 23 6 -3.3423 -4.4051 3.5437 24 6 -5.6815 -3.9110 4.6556 25 8 -6.1463 -5.0170 4.8447 26 7 -6.2778 -2.7458 4.9654 27 6 -5.5020 -1.6999 4.6282 28 8 -5.7812 -0.5292 4.7889 29 6 1.1498 -4.8946 -0.0881 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.5396 -3.3371 2.1352 33 1 3.3064 -4.8166 1.4125 34 1 0.0806 -3.0747 1.9712 35 1 -1.2023 -1.9397 2.6038 36 1 -3.0244 -0.5430 3.4948 37 1 -3.4250 -5.4818 3.5595 38 1 -7.1522 -2.6697 5.3784 39 1 1.6499 -5.7757 -0.4903 40 1 0.1887 -4.6984 -0.5634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022990790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -14.838072 kcal Electronic energy + Delta-G solvation = -27274.983112 eV Core-core repulsion = 23249.820386 eV Total energy + Delta-G solvation = -4025.162726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46069 -40.24603 -38.90400 -38.67994 -37.56267 -35.89026 -33.83801 -32.96949 -31.43050 -31.25341 -29.94092 -25.86953 -25.32074 -25.06969 -24.27706 -23.12505 -22.34914 -20.67633 -20.46930 -19.03022 -18.24716 -18.06149 -17.33733 -17.15871 -16.68014 -16.13587 -15.69830 -15.38448 -15.14571 -14.93959 -14.67160 -14.36599 -14.28237 -14.21234 -14.05791 -13.45890 -13.27085 -13.15179 -12.79987 -12.12017 -11.99734 -11.86323 -11.52044 -11.01820 -10.92796 -10.87759 -10.71110 -10.71035 -10.46979 -10.30455 -9.98902 -9.81664 -9.67180 -9.49002 -9.45219 -9.06512 -8.72406 -7.18453 -5.98398 -3.28145 -0.34615 0.65731 1.54619 2.27293 2.64787 2.81922 3.10120 3.31991 3.38789 3.39769 3.48525 3.58661 3.98797 4.34168 4.42105 4.61119 4.82395 4.93653 4.98157 5.08211 5.13416 5.32518 5.38542 5.52468 5.58654 5.64371 5.65275 5.78597 5.85475 5.95249 6.04684 6.11585 6.17035 6.26945 6.31401 6.48257 6.55457 6.71824 6.85996 6.93844 7.43540 7.56640 7.72841 8.21086 8.30751 9.32573 9.85945 10.21465 11.23664 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003764 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.453522 B = 7437.959087 C = 9606.183213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.161 3.839 11 H 0.054 0.946 12 C -0.178 4.178 13 C 0.125 3.875 14 H 0.092 0.908 15 N -0.690 5.690 16 C 0.556 3.444 17 O -0.540 6.540 18 C -0.108 4.108 19 C -0.046 4.046 20 C -0.041 4.041 21 C -0.125 4.125 22 C -0.159 4.159 23 C 0.012 3.988 24 C 0.583 3.417 25 O -0.464 6.464 26 N -0.680 5.680 27 C 0.579 3.421 28 O -0.460 6.460 29 C -0.163 4.163 30 H 0.258 0.742 31 H 0.383 0.617 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.415 0.585 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.429 0.571 39 H 0.089 0.911 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 -6.520 8.065 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.050 3.950 11 H 0.072 0.928 12 C -0.219 4.219 13 C 0.020 3.980 14 H 0.110 0.890 15 N -0.343 5.343 16 C 0.342 3.658 17 O -0.419 6.419 18 C -0.111 4.111 19 C -0.065 4.065 20 C -0.060 4.060 21 C -0.129 4.129 22 C -0.163 4.163 23 C -0.008 4.008 24 C 0.371 3.629 25 O -0.334 6.334 26 N -0.347 5.347 27 C 0.367 3.633 28 O -0.330 6.330 29 C -0.203 4.203 30 H 0.068 0.932 31 H 0.218 0.782 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.256 0.744 35 H 0.177 0.823 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.271 0.729 39 H 0.107 0.893 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.265 -7.172 8.192 12.562 hybrid contribution -0.298 1.554 0.105 1.585 sum -6.563 -5.618 8.298 11.978 Atomic orbital electron populations 1.69619 1.05013 1.26051 1.57429 1.24716 0.95561 0.97663 1.02500 0.86193 0.78729 0.83612 0.77650 1.21681 1.21690 1.20724 1.19246 0.91284 0.83696 1.43168 0.90890 1.42261 1.05522 0.99545 1.87907 1.21225 0.94123 0.85938 0.93737 0.92817 1.24068 0.94775 1.00275 1.02800 1.21790 0.87037 0.94682 0.94506 0.88966 1.45864 1.16793 1.11716 1.59962 1.18067 0.82178 0.87404 0.78109 1.90757 1.80054 1.13669 1.57433 1.20249 0.95561 0.93906 1.01413 1.21967 0.99180 0.92267 0.93056 1.20805 0.89919 1.01690 0.93566 1.20651 0.95836 0.94202 1.02205 1.20284 0.96165 0.94375 1.05452 1.20725 0.88779 1.01212 0.90050 1.18240 0.84860 0.83360 0.76402 1.90856 1.69302 1.23213 1.50076 1.44423 1.22371 1.08383 1.59537 1.18373 0.83977 0.84490 0.76474 1.90859 1.75777 1.16167 1.50221 1.23722 1.01274 0.99416 0.95839 0.93248 0.78179 0.90569 0.89875 0.74447 0.82294 0.82983 0.82846 0.72865 0.89272 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.24 13.06 55.49 0.72 -23.51 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 20.33 29.55 -169.99 -5.02 15.31 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.24 -5.91 9.99 -15.06 -0.15 -6.06 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.71 -15.23 4.41 -52.64 -0.23 -15.46 16 10 C 0.16 2.80 4.53 -67.12 -0.30 2.50 16 11 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.18 -2.67 7.61 -25.92 -0.20 -2.87 16 13 C 0.13 1.87 4.28 -67.12 -0.29 1.59 16 14 H 0.09 1.36 7.54 -51.93 -0.39 0.97 16 15 N -0.69 -10.59 4.90 -53.91 -0.26 -10.85 16 16 C 0.56 8.58 7.78 -12.25 -0.10 8.49 16 17 O -0.54 -9.57 15.98 5.34 0.09 -9.48 16 18 C -0.11 -1.43 5.88 -104.86 -0.62 -2.05 16 19 C -0.05 -0.58 9.54 -39.05 -0.37 -0.95 16 20 C -0.04 -0.48 10.08 -39.37 -0.40 -0.87 16 21 C -0.12 -1.44 6.41 -104.70 -0.67 -2.11 16 22 C -0.16 -1.86 6.39 -104.86 -0.67 -2.53 16 23 C 0.01 0.15 9.63 -38.94 -0.37 -0.23 16 24 C 0.58 6.60 8.45 -12.46 -0.11 6.49 16 25 O -0.46 -6.31 18.04 5.41 0.10 -6.21 16 26 N -0.68 -6.31 5.76 -13.18 -0.08 -6.39 16 27 C 0.58 6.53 8.47 -12.36 -0.10 6.42 16 28 O -0.46 -6.27 18.04 5.43 0.10 -6.17 16 29 C -0.16 -2.47 7.58 -25.92 -0.20 -2.67 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.38 8.61 6.98 -40.82 -0.29 8.32 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.42 6.66 5.19 -40.82 -0.21 6.45 16 35 H 0.16 2.12 6.36 -52.49 -0.33 1.79 16 36 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.15 1.88 7.65 -52.48 -0.40 1.48 16 38 H 0.43 2.80 8.96 -40.82 -0.37 2.44 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -29.20 350.76 -8.01 -37.21 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -4.07 Total: 15.42 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -4.64 Total: 4.85 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.15 Total: -56.22 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.28 Total: -21.86 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.20 -8.01 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022990790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.374 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds