Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00317 * 2 1 4 4 H 1.48497 * 109.47038 * 270.00480 * 3 2 1 5 5 H 1.48504 * 109.46978 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.47493 * 150.00004 * 3 2 1 7 7 C 1.38823 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99514 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99883 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85256 * 314.82956 * 10 9 7 12 12 C 1.53773 * 113.61677 * 86.02363 * 10 9 7 13 13 C 1.53785 * 87.07949 * 89.20202 * 12 10 9 14 14 H 1.09003 * 113.61750 * 140.06912 * 13 12 10 15 15 N 1.46496 * 113.61611 * 270.88268 * 13 12 10 16 16 C 1.34772 * 120.00313 * 201.66424 * 15 13 12 17 17 O 1.21524 * 120.00182 * 0.02562 * 16 15 13 18 18 C 1.48017 * 120.00241 * 180.02562 * 16 15 13 19 19 C 1.39473 * 119.92172 * 359.97438 * 18 16 15 20 20 C 1.38442 * 120.30666 * 180.02562 * 19 18 16 21 21 C 1.38598 * 119.90474 * 359.97438 * 20 19 18 22 22 C 1.40990 * 120.05523 * 0.02562 * 21 20 19 23 23 C 1.38427 * 119.96146 * 359.97438 * 22 21 20 24 24 C 1.47830 * 105.88943 * 179.97438 * 22 21 20 25 25 O 1.21448 * 125.69450 * 179.97438 * 24 22 21 26 26 N 1.34509 * 108.61984 * 0.02562 * 24 22 21 27 27 C 1.34513 * 111.10776 * 359.97438 * 26 24 22 28 28 O 1.21423 * 125.72411 * 179.97438 * 27 26 24 29 29 C 1.53778 * 113.69131 * 183.56426 * 10 9 7 30 30 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00363 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.61491 * 334.65965 * 12 10 9 33 33 H 1.09003 * 113.69777 * 203.75897 * 12 10 9 34 34 H 0.97009 * 119.99930 * 21.67142 * 15 13 12 35 35 H 1.07990 * 119.84640 * 359.97438 * 19 18 16 36 36 H 1.08005 * 120.04936 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.19095 * 179.72711 * 23 22 21 38 38 H 0.96999 * 124.44675 * 180.02562 * 26 24 22 39 39 H 1.09001 * 113.61675 * 156.32775 * 29 10 9 40 40 H 1.08996 * 113.61826 * 25.42386 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.8830 -3.6694 -0.7129 12 6 2.4506 -4.1415 1.4050 13 6 1.0946 -4.8655 1.4484 14 1 1.1413 -5.8531 1.9072 15 7 0.0064 -4.0419 1.9811 16 6 -1.0979 -4.6279 2.4847 17 8 -1.1908 -5.8395 2.4974 18 6 -2.1976 -3.7958 3.0223 19 6 -2.0891 -2.4053 3.0075 20 6 -3.1126 -1.6193 3.5088 21 6 -4.2511 -2.2157 4.0276 22 6 -4.3667 -3.6207 4.0454 23 6 -3.3423 -4.4051 3.5437 24 6 -5.6815 -3.9110 4.6556 25 8 -6.1463 -5.0170 4.8447 26 7 -6.2778 -2.7458 4.9654 27 6 -5.5020 -1.6999 4.6282 28 8 -5.7812 -0.5292 4.7889 29 6 1.1498 -4.8946 -0.0881 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.5396 -3.3371 2.1352 33 1 3.3064 -4.8166 1.4125 34 1 0.0806 -3.0747 1.9712 35 1 -1.2023 -1.9397 2.6038 36 1 -3.0244 -0.5430 3.4948 37 1 -3.4250 -5.4818 3.5595 38 1 -7.1522 -2.6697 5.3784 39 1 1.6499 -5.7757 -0.4903 40 1 0.1887 -4.6984 -0.5634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022990790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = -34.875729 kcal Electronic energy + Delta-G solvation = -27275.852010 eV Core-core repulsion = 23249.820386 eV Total energy + Delta-G solvation = -4026.031624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.41540 -41.45997 -39.90990 -39.85304 -38.74531 -36.87582 -35.46166 -34.33872 -32.49579 -32.30991 -31.58957 -27.01786 -26.55665 -26.21734 -25.74470 -24.28121 -23.58036 -21.71879 -21.56134 -20.34431 -19.34396 -19.13188 -18.92844 -18.25402 -17.62023 -17.33681 -16.76187 -16.62300 -16.39556 -16.30459 -15.86808 -15.67902 -15.42907 -15.29843 -15.17515 -14.99927 -14.80947 -14.24732 -13.84225 -13.34332 -13.28834 -13.09217 -12.97157 -12.76402 -12.50893 -12.08899 -11.88399 -11.86357 -11.73099 -11.66503 -11.64086 -11.15488 -11.03233 -10.78395 -10.52748 -10.43691 -9.97791 -8.93858 -7.88577 -5.16319 -1.34203 -0.33523 0.54144 1.39124 1.53362 1.56877 1.62160 1.66333 1.76300 1.98870 2.45753 2.52296 2.61344 3.03289 3.37177 3.43710 3.48839 3.72032 3.79322 3.87961 3.94133 4.02346 4.07186 4.25973 4.44202 4.57375 4.64588 4.77131 4.87658 4.88453 4.93789 4.99463 5.02704 5.10469 5.18033 5.28662 5.33176 5.40511 5.58646 5.72536 5.91585 6.34728 6.48256 6.57846 7.07098 7.41938 8.12885 8.38655 9.33266 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003764 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.453522 B = 7437.959087 C = 9606.183213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.056 4.056 3 Si 0.959 3.041 4 H -0.297 1.297 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.054 0.946 12 C -0.160 4.160 13 C 0.123 3.877 14 H 0.100 0.900 15 N -0.691 5.691 16 C 0.557 3.443 17 O -0.565 6.565 18 C -0.114 4.114 19 C -0.042 4.042 20 C -0.038 4.038 21 C -0.121 4.121 22 C -0.158 4.158 23 C 0.014 3.986 24 C 0.593 3.407 25 O -0.483 6.483 26 N -0.662 5.662 27 C 0.589 3.411 28 O -0.480 6.480 29 C -0.151 4.151 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.412 0.588 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.444 0.556 39 H 0.119 0.881 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 -6.970 8.586 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.250 4.250 3 Si 0.790 3.210 4 H -0.225 1.225 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.360 5.360 10 C 0.034 3.966 11 H 0.072 0.928 12 C -0.201 4.201 13 C 0.018 3.982 14 H 0.118 0.882 15 N -0.343 5.343 16 C 0.344 3.656 17 O -0.446 6.446 18 C -0.118 4.118 19 C -0.061 4.061 20 C -0.057 4.057 21 C -0.125 4.125 22 C -0.161 4.161 23 C -0.006 4.006 24 C 0.382 3.618 25 O -0.356 6.356 26 N -0.329 5.329 27 C 0.377 3.623 28 O -0.352 6.352 29 C -0.190 4.190 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.251 0.749 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.172 0.828 38 H 0.289 0.711 39 H 0.137 0.863 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.968 -7.647 8.725 13.047 hybrid contribution -0.345 1.641 -0.081 1.679 sum -6.313 -6.006 8.644 12.274 Atomic orbital electron populations 1.69724 1.05837 1.25975 1.59045 1.25260 0.96224 0.99904 1.03619 0.85371 0.77970 0.80808 0.76884 1.22521 1.22328 1.19932 1.19490 0.91436 0.84806 1.41342 0.90889 1.42333 1.05275 1.00300 1.88082 1.21473 0.94544 0.85244 0.95333 0.92831 1.23948 0.95917 1.00123 1.00113 1.21877 0.86923 0.94942 0.94476 0.88170 1.45910 1.17043 1.11545 1.59799 1.18305 0.82414 0.87240 0.77603 1.90736 1.80587 1.14670 1.58623 1.20083 0.95413 0.93914 1.02360 1.21849 0.99172 0.91991 0.93096 1.20893 0.89557 1.02202 0.93033 1.20713 0.95934 0.94096 1.01787 1.20296 0.96250 0.94341 1.05250 1.20706 0.88642 1.01340 0.89912 1.18090 0.84539 0.83329 0.75872 1.90859 1.69691 1.24032 1.50989 1.44198 1.22745 1.07152 1.58812 1.18224 0.83810 0.84282 0.75943 1.90864 1.76137 1.17018 1.51147 1.23712 1.00136 0.99260 0.95898 0.93881 0.79049 0.92117 0.86746 0.74852 0.83240 0.81837 0.82753 0.71059 0.86272 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -50.05 13.06 21.65 0.28 -49.76 16 2 C -0.06 -2.83 5.50 84.86 0.47 -2.37 16 3 Si 0.96 41.76 29.55 68.60 2.03 43.79 16 4 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.24 -11.54 9.99 84.04 0.84 -10.70 16 8 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 9 N -0.72 -30.64 4.41 -320.45 -1.41 -32.05 16 10 C 0.14 4.81 4.53 45.51 0.21 5.02 16 11 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 12 C -0.16 -4.50 7.61 31.12 0.24 -4.26 16 13 C 0.12 3.50 4.28 45.52 0.19 3.70 16 14 H 0.10 2.75 7.54 -2.39 -0.02 2.73 16 15 N -0.69 -21.01 4.90 -442.76 -2.17 -23.18 16 16 C 0.56 17.09 7.78 86.84 0.68 17.77 16 17 O -0.57 -19.82 15.98 -3.79 -0.06 -19.88 16 18 C -0.11 -3.02 5.88 -20.02 -0.12 -3.13 16 19 C -0.04 -1.05 9.54 22.62 0.22 -0.84 16 20 C -0.04 -0.86 10.08 22.40 0.23 -0.63 16 21 C -0.12 -2.65 6.41 -19.92 -0.13 -2.78 16 22 C -0.16 -3.51 6.39 -20.02 -0.13 -3.64 16 23 C 0.01 0.33 9.63 22.68 0.22 0.55 16 24 C 0.59 12.55 8.45 86.82 0.73 13.28 16 25 O -0.48 -12.53 18.04 -3.55 -0.06 -12.59 16 26 N -0.66 -11.08 5.76 -432.58 -2.49 -13.57 16 27 C 0.59 12.34 8.47 86.89 0.74 13.07 16 28 O -0.48 -12.38 18.04 -3.48 -0.06 -12.44 16 29 C -0.15 -4.32 7.58 31.12 0.24 -4.09 16 30 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 31 H 0.38 17.03 6.98 -92.71 -0.65 16.38 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.41 13.31 5.19 -92.70 -0.48 12.83 16 35 H 0.15 4.08 6.36 -2.92 -0.02 4.06 16 36 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.15 3.72 7.65 -2.91 -0.02 3.70 16 38 H 0.44 4.89 8.96 -92.71 -0.83 4.05 16 39 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -60.95 350.76 -0.15 -61.11 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.81 Total: 37.63 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 4.61 Total: 20.95 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -5.79 Total: -118.57 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.19 Total: -44.92 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -60.95 -0.15 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022990790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.230 kcal (2) G-P(sol) polarization free energy of solvation -60.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds