Wall clock time and date at job start Tue Mar 31 2020 04:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47155 * 274.98488 * 3 2 1 5 5 H 1.48496 * 109.47142 * 34.98741 * 3 2 1 6 6 H 1.48499 * 109.47057 * 154.98299 * 3 2 1 7 7 C 1.38809 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99902 * 185.06507 * 7 2 1 9 9 N 1.36938 * 120.00193 * 5.06648 * 7 2 1 10 10 C 1.47572 * 134.49576 * 173.48404 * 9 7 2 11 11 C 1.53946 * 86.11877 * 155.35377 * 10 9 7 12 12 C 1.53006 * 113.73973 * 137.95047 * 11 10 9 13 13 N 1.46501 * 109.47038 * 176.92652 * 12 11 10 14 14 C 1.34775 * 120.00194 * 179.97438 * 13 12 11 15 15 O 1.21603 * 119.99903 * 359.97438 * 14 13 12 16 16 C 1.47427 * 119.99998 * 179.97438 * 14 13 12 17 17 C 1.38043 * 126.41462 * 0.13300 * 16 14 13 18 18 N 1.34266 * 107.41624 * 180.25550 * 17 16 14 19 19 H 0.96994 * 125.75889 * 179.76916 * 18 17 16 20 20 N 1.39941 * 108.49083 * 359.76591 * 18 17 16 21 21 C 1.30454 * 108.89703 * 0.02562 * 20 18 17 22 22 S 1.76194 * 125.98971 * 179.97438 * 21 20 18 23 23 N 1.65593 * 107.21988 * 90.02057 * 22 21 20 24 24 O 1.42107 * 106.39968 * 336.48047 * 22 21 20 25 25 O 1.42096 * 106.40384 * 203.56746 * 22 21 20 26 26 C 1.47818 * 134.45141 * 353.34372 * 9 7 2 27 27 H 0.97008 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08996 * 113.77183 * 41.05312 * 10 9 7 29 29 H 1.09005 * 113.76712 * 269.65239 * 10 9 7 30 30 H 1.08999 * 113.74253 * 269.14879 * 11 10 9 31 31 H 1.08996 * 109.46954 * 56.92620 * 12 11 10 32 32 H 1.08998 * 109.47119 * 296.92080 * 12 11 10 33 33 H 0.97002 * 119.99933 * 359.97438 * 13 12 11 34 34 H 1.07996 * 126.29155 * 0.02562 * 17 16 14 35 35 H 0.97003 * 119.99888 * 0.02562 * 23 22 21 36 36 H 0.97002 * 120.00248 * 179.72263 * 23 22 21 37 37 H 1.09000 * 113.76933 * 90.38691 * 26 9 7 38 38 H 1.09000 * 113.83945 * 318.92045 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0870 -1.2039 0.0831 9 7 1.3296 -2.3858 -0.1037 10 6 1.7286 -3.7985 -0.2549 11 6 0.3709 -4.1416 0.3846 12 6 -0.3481 -5.3131 -0.2876 13 7 -1.5877 -5.6055 0.4364 14 6 -2.3907 -6.6051 0.0214 15 8 -2.0866 -7.2641 -0.9542 16 6 -3.6378 -6.8997 0.7504 17 6 -4.1106 -6.2385 1.8661 18 7 -5.2684 -6.8204 2.2176 19 1 -5.8252 -6.5659 2.9700 20 7 -5.5365 -7.8560 1.3154 21 6 -4.5740 -7.9104 0.4365 22 16 -4.4586 -9.0487 -0.9034 23 7 -5.2148 -8.3546 -2.2028 24 8 -5.2413 -10.1775 -0.5395 25 8 -3.0806 -9.1343 -1.2396 26 6 -0.1002 -2.7609 -0.1071 27 1 -0.4850 0.8401 -0.0004 28 1 2.5858 -4.0807 0.3562 29 1 1.8195 -4.1206 -1.2923 30 1 0.4075 -4.2319 1.4702 31 1 0.2969 -6.1916 -0.2733 32 1 -0.5830 -5.0515 -1.3193 33 1 -1.8304 -5.0796 1.2145 34 1 -3.6345 -5.4084 2.3667 35 1 -5.6125 -7.4738 -2.1190 36 1 -5.2562 -8.8269 -3.0491 37 1 -0.5476 -2.7776 -1.1009 38 1 -0.7003 -2.2163 0.6218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031965449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:49 Heat of formation + Delta-G solvation = 32.964694 kcal Electronic energy + Delta-G solvation = -25622.600131 eV Core-core repulsion = 21631.413897 eV Total energy + Delta-G solvation = -3991.186234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.92822 -39.24699 -37.91448 -37.03073 -35.80204 -34.37491 -33.31591 -32.50734 -32.26925 -31.10915 -28.66510 -25.94258 -24.81675 -23.73016 -23.36333 -21.90948 -20.40972 -19.52217 -19.38030 -18.52309 -17.74898 -17.42164 -16.81345 -16.52889 -15.80384 -15.71887 -15.68703 -15.40208 -15.05028 -14.56492 -14.33529 -13.89010 -13.71750 -13.19009 -12.85496 -12.36164 -12.24826 -12.07821 -11.96475 -11.84656 -11.56341 -11.41106 -11.35184 -11.01825 -10.81765 -10.75777 -10.59106 -10.56639 -9.99825 -9.78739 -9.64209 -9.44804 -9.40760 -8.83004 -8.74187 -6.89792 -5.82683 -3.13089 0.18371 0.91160 1.12333 2.11946 2.96999 3.28814 3.34415 3.36153 3.41914 3.43065 3.55501 3.83495 4.32901 4.42549 4.62566 4.92717 5.11193 5.16251 5.31814 5.32980 5.42971 5.65190 5.82315 5.83356 6.07850 6.26718 6.36309 6.38450 6.54959 6.58380 6.65097 6.75628 6.85595 7.17070 7.31304 7.51497 7.64836 7.93844 8.38717 9.00857 9.66968 10.57085 11.35236 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002528 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.325887 B =11072.137013 C =11575.877673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.614 5.614 10 C 0.128 3.872 11 C -0.154 4.154 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.558 3.442 15 O -0.486 6.486 16 C -0.206 4.206 17 C 0.101 3.899 18 N -0.442 5.442 19 H 0.450 0.550 20 N -0.182 5.182 21 C -0.432 4.432 22 S 2.720 3.280 23 N -1.244 6.244 24 O -0.958 6.958 25 O -0.893 6.893 26 C 0.172 3.828 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.201 0.799 35 H 0.415 0.585 36 H 0.422 0.578 37 H 0.030 0.970 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 -14.424 3.345 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.340 5.340 10 C 0.001 3.999 11 C -0.174 4.174 12 C 0.009 3.991 13 N -0.370 5.370 14 C 0.341 3.659 15 O -0.359 6.359 16 C -0.222 4.222 17 C -0.050 4.050 18 N -0.152 5.152 19 H 0.296 0.704 20 N -0.007 5.007 21 C -0.680 4.680 22 S 2.798 3.202 23 N -0.920 5.920 24 O -0.947 6.947 25 O -0.881 6.881 26 C 0.046 3.954 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.218 0.782 35 H 0.241 0.759 36 H 0.253 0.747 37 H 0.048 0.952 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.952 -15.954 3.242 21.440 hybrid contribution 0.323 2.798 0.690 2.900 sum -13.629 -13.155 3.931 19.346 Atomic orbital electron populations 1.69826 1.05052 1.25297 1.56612 1.24805 0.95688 0.97507 1.02428 0.86137 0.78767 0.83572 0.77549 1.21615 1.21757 1.20555 1.19044 0.90815 0.82122 1.43003 0.90217 1.45979 1.02468 1.00722 1.84804 1.22497 0.94058 0.86245 0.97062 1.23821 0.98341 0.95159 1.00077 1.21471 0.83716 0.97853 0.96109 1.45826 1.23794 1.34424 1.32984 1.17354 0.82323 0.81244 0.84945 1.91104 1.72786 1.46943 1.25113 1.20257 0.99935 1.00749 1.01294 1.23446 0.87655 0.98010 0.95868 1.46545 1.18677 1.24667 1.25264 0.70365 1.77224 1.19951 1.03886 0.99680 1.35189 0.99346 1.15954 1.17521 1.01750 0.74484 0.71700 0.72255 1.52890 1.78053 1.32497 1.28544 1.93615 1.71761 1.46308 1.83024 1.93847 1.30426 1.83089 1.80739 1.22294 0.87984 0.87326 0.97772 0.93719 0.93687 0.94503 0.89313 0.91584 0.91117 0.77056 0.78217 0.75865 0.74731 0.95249 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 11.51 55.49 0.64 -25.83 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.69 29.56 -169.99 -5.02 16.67 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.22 3.70 -177.71 -0.66 -15.88 16 10 C 0.13 2.49 8.51 -2.97 -0.03 2.46 16 11 C -0.15 -2.58 3.93 -89.69 -0.35 -2.93 16 12 C 0.13 1.94 5.51 -4.04 -0.02 1.92 16 13 N -0.72 -8.95 5.54 -61.38 -0.34 -9.29 16 14 C 0.56 7.71 7.81 -12.52 -0.10 7.62 16 15 O -0.49 -8.45 12.79 -19.82 -0.25 -8.70 16 16 C -0.21 -2.28 6.12 -105.07 -0.64 -2.92 16 17 C 0.10 0.71 11.52 -16.56 -0.19 0.51 16 18 N -0.44 -2.90 7.29 30.85 0.22 -2.68 16 19 H 0.45 1.14 8.96 -182.72 -1.64 -0.50 16 20 N -0.18 -1.89 12.63 31.51 0.40 -1.49 16 21 C -0.43 -4.96 7.26 -16.98 -0.12 -5.09 16 22 S 2.72 32.16 6.28 -107.50 -0.67 31.48 16 23 N -1.24 -9.83 9.55 60.35 0.58 -9.25 16 24 O -0.96 -13.58 18.02 -57.17 -1.03 -14.61 16 25 O -0.89 -13.91 13.99 -67.38 -0.94 -14.86 16 26 C 0.17 3.74 6.99 -2.84 -0.02 3.72 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.13 7.88 -51.93 -0.41 0.73 16 33 H 0.40 3.81 7.40 -40.82 -0.30 3.51 16 34 H 0.20 0.59 7.46 -52.49 -0.39 0.20 16 35 H 0.41 2.48 8.92 -34.46 -0.31 2.17 16 36 H 0.42 2.48 8.96 -34.47 -0.31 2.17 16 37 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 38 H 0.07 1.57 7.37 -51.93 -0.38 1.19 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -40.37 339.55 -9.09 -49.45 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.38 Total: 1.16 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.73 Total: -1.30 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.84 Total: -64.41 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.23 Total: -38.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 32.16 SS G_CDS: -0.67 Total: 31.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -40.37 -9.09 -49.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031965449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.415 kcal (2) G-P(sol) polarization free energy of solvation -40.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds