Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99721 * 186.41920 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 C 1.53005 * 114.26820 * 139.79518 * 11 10 9 13 13 N 1.46496 * 109.47088 * 91.47079 * 12 11 10 14 14 C 1.34774 * 119.99740 * 179.97438 * 13 12 11 15 15 O 1.21531 * 120.00274 * 0.02562 * 14 13 12 16 16 C 1.48015 * 120.00315 * 180.02562 * 14 13 12 17 17 C 1.39464 * 119.91969 * 0.02562 * 16 14 13 18 18 C 1.38445 * 120.30812 * 180.02562 * 17 16 14 19 19 C 1.38591 * 119.89777 * 359.97438 * 18 17 16 20 20 C 1.40989 * 120.06504 * 0.02562 * 19 18 17 21 21 C 1.38431 * 119.95659 * 359.76025 * 20 19 18 22 22 C 1.47833 * 105.88826 * 180.02562 * 20 19 18 23 23 O 1.21453 * 125.68992 * 180.02562 * 22 20 19 24 24 N 1.34498 * 108.62321 * 359.97438 * 22 20 19 25 25 C 1.34513 * 111.10858 * 359.97438 * 24 22 20 26 26 O 1.21423 * 125.72487 * 180.02562 * 25 24 22 27 27 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 28 28 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 30 30 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 31 31 H 1.09008 * 114.39164 * 272.67254 * 11 10 9 32 32 H 1.09000 * 109.46450 * 211.47445 * 12 11 10 33 33 H 1.09000 * 109.46843 * 331.46898 * 12 11 10 34 34 H 0.97000 * 120.00435 * 0.02562 * 13 12 11 35 35 H 1.08003 * 119.85126 * 359.97427 * 17 16 14 36 36 H 1.07994 * 120.05266 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.18968 * 180.22846 * 21 20 19 38 38 H 0.96998 * 124.44681 * 180.02562 * 24 22 20 39 39 H 1.08996 * 113.46819 * 321.85844 * 27 9 7 40 40 H 1.09006 * 113.46873 * 92.30541 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 6 -0.3177 -5.3341 -0.6570 13 7 -1.3359 -5.5599 -1.6857 14 6 -2.1727 -6.6117 -1.5862 15 8 -2.0828 -7.3726 -0.6429 16 6 -3.2011 -6.8402 -2.6259 17 6 -3.3025 -5.9663 -3.7081 18 6 -4.2618 -6.1722 -4.6848 19 6 -5.1257 -7.2516 -4.5881 20 6 -5.0282 -8.1386 -3.4965 21 6 -4.0655 -7.9338 -2.5231 22 6 -6.0808 -9.1554 -3.7060 23 8 -6.3147 -10.0946 -2.9724 24 7 -6.7368 -8.8662 -4.8440 25 6 -6.2369 -7.7602 -5.4237 26 8 -6.6305 -7.2627 -6.4591 27 6 1.6717 -3.8136 -0.0623 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6458 -2.9419 0.5050 30 1 -0.5617 -2.1435 -1.1235 31 1 0.7431 -4.0157 -2.0656 32 1 0.3474 -6.1963 -0.6085 33 1 -0.8022 -5.1942 0.3093 34 1 -1.4074 -4.9528 -2.4389 35 1 -2.6301 -5.1246 -3.7842 36 1 -4.3369 -5.4927 -5.5208 37 1 -3.9851 -8.6130 -1.6873 38 1 -7.4741 -9.3866 -5.1997 39 1 2.6415 -4.0509 -0.4996 40 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032135185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = 7.949485 kcal Electronic energy + Delta-G solvation = -26068.880379 eV Core-core repulsion = 22044.705796 eV Total energy + Delta-G solvation = -4024.174583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -42.72363 -40.28329 -39.14118 -38.58976 -37.98021 -36.14364 -34.75762 -32.43054 -31.85840 -31.68894 -29.02279 -26.52483 -25.65518 -24.77009 -24.60880 -23.19982 -22.10415 -21.00384 -20.81797 -19.42276 -18.48166 -18.14749 -17.65479 -16.92567 -16.78582 -16.35435 -16.01935 -15.67911 -15.47106 -15.02326 -14.87427 -14.55253 -14.52211 -14.51218 -13.93046 -13.55557 -13.54356 -13.29115 -12.88125 -12.43045 -12.34641 -11.57175 -11.34113 -11.17575 -11.16123 -10.95996 -10.93020 -10.83126 -10.69620 -10.26830 -9.96061 -9.90696 -9.83622 -9.77888 -9.35777 -9.01460 -8.85308 -6.96909 -5.86482 -3.17535 -0.64916 0.33960 1.23903 2.03503 2.41138 2.54061 2.82434 3.18721 3.28252 3.34105 3.39544 3.41514 3.71474 4.01095 4.26967 4.38568 4.41447 4.60698 4.67774 5.07964 5.13676 5.20965 5.27543 5.30089 5.34202 5.47448 5.55570 5.58539 5.71674 5.84306 5.89746 5.96723 6.11134 6.24003 6.39250 6.53627 6.61634 6.62031 7.06975 7.20101 7.22770 7.35152 7.42976 7.88734 8.00240 8.95761 9.62196 10.55729 11.32242 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002118 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.841025 B =13219.930432 C =14173.439167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.610 5.610 10 C 0.168 3.832 11 C -0.162 4.162 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.552 3.448 15 O -0.530 6.530 16 C -0.102 4.102 17 C -0.060 4.060 18 C -0.046 4.046 19 C -0.124 4.124 20 C -0.151 4.151 21 C 0.012 3.988 22 C 0.581 3.419 23 O -0.458 6.458 24 N -0.679 5.679 25 C 0.579 3.421 26 O -0.459 6.459 27 C 0.127 3.873 28 H 0.254 0.746 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.431 0.569 39 H 0.043 0.957 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 -16.290 -11.507 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.336 5.336 10 C 0.042 3.958 11 C -0.182 4.182 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.337 3.663 15 O -0.407 6.407 16 C -0.105 4.105 17 C -0.079 4.079 18 C -0.065 4.065 19 C -0.128 4.128 20 C -0.155 4.155 21 C -0.008 4.008 22 C 0.369 3.631 23 O -0.328 6.328 24 N -0.346 5.346 25 C 0.366 3.634 26 O -0.330 6.330 27 C 0.000 4.000 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.238 0.762 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.273 0.727 39 H 0.061 0.939 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.943 -16.609 -10.899 22.680 hybrid contribution -0.075 1.025 -0.383 1.096 sum -11.018 -15.584 -11.282 22.171 Atomic orbital electron populations 1.69840 1.05063 1.25505 1.56203 1.24836 0.95696 0.97698 1.02189 0.86093 0.78715 0.83322 0.77581 1.21563 1.20474 1.21553 1.18950 0.90445 0.81487 1.43860 0.90037 1.45657 1.05660 0.99357 1.82896 1.22101 0.88520 0.88748 0.96426 1.23694 0.99173 0.94723 1.00594 1.21470 0.88868 0.98042 0.90737 1.45992 1.34466 1.27932 1.27802 1.18048 0.81213 0.81670 0.85358 1.90814 1.71143 1.45898 1.32889 1.20286 0.97668 0.96350 0.96240 1.21737 0.96549 0.97916 0.91677 1.20748 0.91910 0.94999 0.98849 1.20669 0.97958 0.97829 0.96313 1.20355 0.99346 0.97860 0.97905 1.20798 0.88913 0.94741 0.96301 1.18228 0.81100 0.84023 0.79789 1.90882 1.66373 1.29098 1.46434 1.44424 1.36191 1.28846 1.25173 1.18338 0.81890 0.79386 0.83737 1.90868 1.61685 1.59337 1.21089 1.22310 0.95149 0.86941 0.95558 0.93584 0.95170 0.92191 0.88775 0.91335 0.90833 0.76238 0.83167 0.83057 0.82569 0.72658 0.93916 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 11.81 55.49 0.66 -25.85 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.50 29.56 -169.99 -5.02 16.48 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -5.99 10.73 -15.06 -0.16 -6.15 16 8 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 9 N -0.61 -14.95 3.76 -184.60 -0.69 -15.65 16 10 C 0.17 3.59 6.81 -8.37 -0.06 3.54 16 11 C -0.16 -2.56 4.11 -89.97 -0.37 -2.93 16 12 C 0.13 1.77 5.59 -4.04 -0.02 1.74 16 13 N -0.71 -7.82 5.50 -61.20 -0.34 -8.16 16 14 C 0.55 6.51 7.78 -12.25 -0.10 6.41 16 15 O -0.53 -8.17 16.34 5.34 0.09 -8.08 16 16 C -0.10 -0.91 5.88 -104.86 -0.62 -1.53 16 17 C -0.06 -0.38 9.54 -39.05 -0.37 -0.75 16 18 C -0.05 -0.28 10.08 -39.37 -0.40 -0.68 16 19 C -0.12 -0.93 6.41 -104.70 -0.67 -1.61 16 20 C -0.15 -1.26 6.39 -104.86 -0.67 -1.93 16 21 C 0.01 0.11 9.63 -38.94 -0.37 -0.27 16 22 C 0.58 5.01 8.45 -12.46 -0.11 4.91 16 23 O -0.46 -5.20 18.04 5.41 0.10 -5.10 16 24 N -0.68 -4.46 5.76 -13.18 -0.08 -4.54 16 25 C 0.58 4.62 8.47 -12.36 -0.10 4.51 16 26 O -0.46 -4.77 18.04 5.43 0.10 -4.67 16 27 C 0.13 2.41 8.25 -8.51 -0.07 2.34 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.68 7.88 -51.93 -0.41 0.27 16 30 H 0.06 1.40 7.57 -51.93 -0.39 1.00 16 31 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.09 7.81 -51.93 -0.41 0.69 16 34 H 0.40 3.43 6.48 -40.82 -0.26 3.17 16 35 H 0.15 0.62 6.37 -52.48 -0.33 0.29 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.16 1.48 7.65 -52.49 -0.40 1.08 16 38 H 0.43 1.78 8.96 -40.82 -0.37 1.41 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -34.90 353.20 -8.29 -43.19 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.23 Total: -0.23 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -4.18 Total: 7.29 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.45 Total: -54.20 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.28 Total: -17.85 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.90 -8.29 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032135185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds