Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99721 * 186.41920 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 C 1.53005 * 114.26820 * 139.79518 * 11 10 9 13 13 N 1.46496 * 109.47088 * 91.47079 * 12 11 10 14 14 C 1.34774 * 119.99740 * 179.97438 * 13 12 11 15 15 O 1.21531 * 120.00274 * 0.02562 * 14 13 12 16 16 C 1.48015 * 120.00315 * 180.02562 * 14 13 12 17 17 C 1.39464 * 119.91969 * 0.02562 * 16 14 13 18 18 C 1.38445 * 120.30812 * 180.02562 * 17 16 14 19 19 C 1.38591 * 119.89777 * 359.97438 * 18 17 16 20 20 C 1.40989 * 120.06504 * 0.02562 * 19 18 17 21 21 C 1.38431 * 119.95659 * 359.76025 * 20 19 18 22 22 C 1.47833 * 105.88826 * 180.02562 * 20 19 18 23 23 O 1.21453 * 125.68992 * 180.02562 * 22 20 19 24 24 N 1.34498 * 108.62321 * 359.97438 * 22 20 19 25 25 C 1.34513 * 111.10858 * 359.97438 * 24 22 20 26 26 O 1.21423 * 125.72487 * 180.02562 * 25 24 22 27 27 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 28 28 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 30 30 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 31 31 H 1.09008 * 114.39164 * 272.67254 * 11 10 9 32 32 H 1.09000 * 109.46450 * 211.47445 * 12 11 10 33 33 H 1.09000 * 109.46843 * 331.46898 * 12 11 10 34 34 H 0.97000 * 120.00435 * 0.02562 * 13 12 11 35 35 H 1.08003 * 119.85126 * 359.97427 * 17 16 14 36 36 H 1.07994 * 120.05266 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.18968 * 180.22846 * 21 20 19 38 38 H 0.96998 * 124.44681 * 180.02562 * 24 22 20 39 39 H 1.08996 * 113.46819 * 321.85844 * 27 9 7 40 40 H 1.09006 * 113.46873 * 92.30541 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 6 -0.3177 -5.3341 -0.6570 13 7 -1.3359 -5.5599 -1.6857 14 6 -2.1727 -6.6117 -1.5862 15 8 -2.0828 -7.3726 -0.6429 16 6 -3.2011 -6.8402 -2.6259 17 6 -3.3025 -5.9663 -3.7081 18 6 -4.2618 -6.1722 -4.6848 19 6 -5.1257 -7.2516 -4.5881 20 6 -5.0282 -8.1386 -3.4965 21 6 -4.0655 -7.9338 -2.5231 22 6 -6.0808 -9.1554 -3.7060 23 8 -6.3147 -10.0946 -2.9724 24 7 -6.7368 -8.8662 -4.8440 25 6 -6.2369 -7.7602 -5.4237 26 8 -6.6305 -7.2627 -6.4591 27 6 1.6717 -3.8136 -0.0623 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6458 -2.9419 0.5050 30 1 -0.5617 -2.1435 -1.1235 31 1 0.7431 -4.0157 -2.0656 32 1 0.3474 -6.1963 -0.6085 33 1 -0.8022 -5.1942 0.3093 34 1 -1.4074 -4.9528 -2.4389 35 1 -2.6301 -5.1246 -3.7842 36 1 -4.3369 -5.4927 -5.5208 37 1 -3.9851 -8.6130 -1.6873 38 1 -7.4741 -9.3866 -5.1997 39 1 2.6415 -4.0509 -0.4996 40 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032135185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = -18.540114 kcal Electronic energy + Delta-G solvation = -26070.029054 eV Core-core repulsion = 22044.705796 eV Total energy + Delta-G solvation = -4025.323258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38388 -41.20988 -39.93729 -39.88410 -38.92816 -36.86104 -35.90171 -34.24599 -32.68401 -32.31646 -30.53818 -27.94318 -26.46436 -26.30806 -25.57878 -24.01330 -23.54750 -21.80760 -21.57485 -20.81584 -19.15318 -19.06853 -18.69597 -18.31902 -17.60241 -17.28776 -16.93050 -16.83096 -16.45392 -16.33082 -15.88582 -15.64455 -15.49674 -15.28326 -15.14198 -14.87497 -14.49580 -14.22916 -14.12667 -13.65562 -13.33007 -13.01467 -12.98230 -12.90251 -12.59666 -12.23543 -11.86474 -11.81447 -11.69664 -11.67150 -11.62172 -11.20676 -10.96305 -10.83327 -10.51141 -10.39709 -10.04643 -8.91370 -7.92434 -5.23692 -1.30653 -0.29923 0.58102 1.42437 1.48046 1.48746 1.58387 1.69874 1.80255 1.97073 2.47776 2.49723 2.56597 3.06206 3.31559 3.41347 3.44364 3.52756 3.71866 3.83684 3.99310 4.04177 4.19018 4.38898 4.59972 4.64760 4.70159 4.76406 4.83701 4.89495 4.90545 4.90658 5.01766 5.11989 5.20755 5.24876 5.32796 5.40454 5.53847 5.67427 5.93617 5.95122 6.46983 6.59277 6.92317 7.10883 7.60645 8.62020 9.26496 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002118 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.841025 B =13219.930432 C =14173.439167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.266 1.266 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.646 5.646 10 C 0.164 3.836 11 C -0.116 4.116 12 C 0.143 3.857 13 N -0.702 5.702 14 C 0.555 3.445 15 O -0.572 6.572 16 C -0.112 4.112 17 C -0.041 4.041 18 C -0.035 4.035 19 C -0.122 4.122 20 C -0.159 4.159 21 C 0.006 3.994 22 C 0.587 3.413 23 O -0.489 6.489 24 N -0.666 5.666 25 C 0.587 3.413 26 O -0.480 6.480 27 C 0.122 3.878 28 H 0.249 0.751 29 H 0.011 0.989 30 H 0.035 0.965 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.144 0.856 38 H 0.442 0.558 39 H 0.059 0.941 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -16.225 -13.355 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.190 1.190 6 H -0.219 1.219 7 C -0.358 4.358 8 H 0.103 0.897 9 N -0.371 5.371 10 C 0.038 3.962 11 C -0.136 4.136 12 C 0.019 3.981 13 N -0.354 5.354 14 C 0.342 3.658 15 O -0.452 6.452 16 C -0.115 4.115 17 C -0.060 4.060 18 C -0.054 4.054 19 C -0.126 4.126 20 C -0.163 4.163 21 C -0.013 4.013 22 C 0.376 3.624 23 O -0.362 6.362 24 N -0.333 5.333 25 C 0.376 3.624 26 O -0.352 6.352 27 C -0.004 4.004 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.196 0.804 36 H 0.197 0.803 37 H 0.162 0.838 38 H 0.287 0.713 39 H 0.078 0.922 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.287 -16.568 -12.784 23.319 hybrid contribution -0.273 0.961 0.197 1.018 sum -10.559 -15.607 -12.587 22.661 Atomic orbital electron populations 1.70007 1.06433 1.25720 1.57953 1.25649 0.96559 1.00920 1.02865 0.85072 0.77977 0.79172 0.77174 1.21772 1.19035 1.21890 1.19344 0.91029 0.82991 1.42432 0.89746 1.46080 1.07173 1.00810 1.83079 1.22087 0.87345 0.91218 0.95508 1.23298 0.96732 0.92783 1.00784 1.21188 0.89229 0.97071 0.90639 1.45814 1.33818 1.28116 1.27666 1.18374 0.81241 0.80917 0.85275 1.90798 1.72306 1.47350 1.34740 1.20030 0.97430 0.97408 0.96639 1.22013 0.96321 0.97486 0.90132 1.21076 0.90639 0.94477 0.99188 1.20772 0.98050 0.98129 0.95656 1.20252 0.99436 0.98270 0.98321 1.20715 0.89436 0.94914 0.96282 1.18280 0.80975 0.83478 0.79695 1.90871 1.67350 1.30445 1.47539 1.44282 1.36132 1.28543 1.24356 1.18326 0.81660 0.79206 0.83246 1.90869 1.62398 1.59957 1.22024 1.22515 0.97183 0.83916 0.96737 0.94227 0.97090 0.94640 0.86658 0.89969 0.92468 0.74546 0.80382 0.80276 0.83810 0.71321 0.92241 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.84 11.81 21.65 0.26 -55.59 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.98 44.32 29.56 68.60 2.03 46.35 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.23 -12.48 10.73 84.04 0.90 -11.57 16 8 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 9 N -0.65 -31.42 3.76 -737.95 -2.78 -34.20 16 10 C 0.16 7.03 6.81 83.27 0.57 7.60 16 11 C -0.12 -3.45 4.11 -10.37 -0.04 -3.49 16 12 C 0.14 3.55 5.59 86.38 0.48 4.03 16 13 N -0.70 -13.88 5.50 -465.81 -2.56 -16.44 16 14 C 0.55 12.36 7.78 86.84 0.68 13.03 16 15 O -0.57 -17.51 16.34 -3.81 -0.06 -17.57 16 16 C -0.11 -1.80 5.88 -20.02 -0.12 -1.92 16 17 C -0.04 -0.39 9.54 22.61 0.22 -0.17 16 18 C -0.04 -0.31 10.08 22.40 0.23 -0.09 16 19 C -0.12 -1.58 6.41 -19.92 -0.13 -1.70 16 20 C -0.16 -2.51 6.39 -20.02 -0.13 -2.64 16 21 C 0.01 0.11 9.63 22.69 0.22 0.33 16 22 C 0.59 9.85 8.45 86.83 0.73 10.59 16 23 O -0.49 -11.25 18.04 -3.57 -0.06 -11.32 16 24 N -0.67 -8.01 5.76 -432.58 -2.49 -10.50 16 25 C 0.59 8.33 8.47 86.89 0.74 9.07 16 26 O -0.48 -9.08 18.04 -3.48 -0.06 -9.15 16 27 C 0.12 4.41 8.25 83.18 0.69 5.10 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.01 0.52 7.88 -2.38 -0.02 0.50 16 30 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 31 H 0.12 3.00 8.14 -2.38 -0.02 2.99 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.66 7.81 -2.39 -0.02 1.64 16 34 H 0.42 5.75 6.48 -92.71 -0.60 5.15 16 35 H 0.18 0.67 6.37 -2.91 -0.02 0.65 16 36 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.14 2.86 7.65 -2.91 -0.02 2.83 16 38 H 0.44 3.19 8.96 -92.71 -0.83 2.36 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.44 8.11 -2.38 -0.02 1.42 16 Total: -1.00 -77.09 353.20 -0.55 -77.64 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -0.30 Total: 5.86 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.49 Total: 24.93 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -7.58 Total: -116.74 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.19 Total: -38.04 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -77.09 -0.55 -77.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032135185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.100 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds