Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 119.99840 * 2 1 4 4 H 1.48507 * 109.47552 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47165 * 300.00031 * 3 2 1 6 6 H 1.48500 * 109.47288 * 60.00122 * 3 2 1 7 7 C 1.38813 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.47872 * 126.94650 * 0.02562 * 9 7 2 11 11 C 1.56017 * 105.10582 * 182.00090 * 10 9 7 12 12 H 1.09002 * 116.24777 * 158.83723 * 11 10 9 13 13 C 1.57076 * 99.60762 * 32.80336 * 11 10 9 14 14 C 1.49292 * 126.94730 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.78409 * 16.31313 * 14 9 7 16 16 C 1.56014 * 104.09364 * 246.70194 * 14 9 7 17 17 N 1.47874 * 105.19097 * 288.71484 * 16 14 9 18 18 C 1.34778 * 126.94183 * 182.03954 * 17 16 14 19 19 O 1.21282 * 119.99315 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00199 * 0.02728 * 18 17 16 21 21 N 1.46497 * 109.47048 * 180.02562 * 20 18 17 22 22 C 1.46449 * 126.08734 * 84.99533 * 21 20 18 23 23 C 1.53199 * 113.70593 * 178.24811 * 22 21 20 24 24 C 1.55553 * 106.24171 * 27.54820 * 23 22 21 25 25 S 1.67295 * 126.08227 * 264.68948 * 21 20 18 26 26 O 1.42105 * 105.40263 * 274.99724 * 25 21 20 27 27 O 1.42092 * 105.40692 * 45.25441 * 25 21 20 28 28 H 0.96996 * 120.00504 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.31432 * 63.08416 * 10 9 7 30 30 H 1.09008 * 110.30982 * 300.90505 * 10 9 7 31 31 H 1.09007 * 112.36782 * 191.71326 * 13 11 10 32 32 H 1.09001 * 112.37207 * 64.27805 * 13 11 10 33 33 H 1.09002 * 110.31668 * 47.67269 * 16 14 9 34 34 H 1.09004 * 110.31589 * 169.75796 * 16 14 9 35 35 H 1.09002 * 109.46680 * 299.99762 * 20 18 17 36 36 H 1.09000 * 109.47429 * 59.99682 * 20 18 17 37 37 H 1.08999 * 108.64669 * 299.36221 * 22 21 20 38 38 H 1.09001 * 108.64427 * 57.30973 * 22 21 20 39 39 H 1.08999 * 110.10114 * 146.74751 * 23 22 21 40 40 H 1.09000 * 110.09793 * 268.35432 * 23 22 21 41 41 H 1.09006 * 111.36799 * 80.61743 * 24 23 22 42 42 H 1.09001 * 111.37412 * 205.35406 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3637 -4.1104 0.0521 12 1 -1.3361 -4.4458 0.4127 13 6 0.8841 -4.5252 0.9113 14 6 1.9103 -3.7617 -0.0005 15 1 2.9619 -3.8479 0.2728 16 6 1.5084 -4.3456 -1.3903 17 7 0.0518 -4.5855 -1.3033 18 6 -0.7389 -5.1224 -2.2536 19 8 -1.9258 -5.2620 -2.0470 20 6 -0.1482 -5.5493 -3.5726 21 7 -1.2052 -6.0965 -4.4267 22 6 -2.0991 -5.3259 -5.2937 23 6 -3.0751 -6.1914 -6.0971 24 6 -3.3003 -7.4836 -5.2610 25 16 -1.6011 -7.7137 -4.5906 26 8 -0.7145 -8.2211 -5.5785 27 8 -1.6302 -8.2312 -3.2676 28 1 -0.4851 0.8400 0.0004 29 1 -0.5738 -2.1534 -0.9120 30 1 -0.5813 -2.0915 0.8766 31 1 1.0493 -5.6026 0.9096 32 1 0.8453 -4.1191 1.9221 33 1 1.7271 -3.6272 -2.1803 34 1 2.0357 -5.2817 -1.5744 35 1 0.3054 -4.6881 -4.0632 36 1 0.6117 -6.3116 -3.4008 37 1 -2.6731 -4.6349 -4.6764 38 1 -1.4942 -4.7474 -5.9919 39 1 -4.0191 -5.6638 -6.2331 40 1 -2.6429 -6.4426 -7.0658 41 1 -4.0263 -7.3198 -4.4645 42 1 -3.5931 -8.3208 -5.8946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032434458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -22.583849 kcal Electronic energy + Delta-G solvation = -27283.189753 eV Core-core repulsion = 23393.135097 eV Total energy + Delta-G solvation = -3890.054656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.04915 -38.22858 -37.33300 -36.72827 -35.95220 -33.64228 -33.23121 -31.55507 -29.27160 -28.58826 -27.71089 -25.96041 -25.18848 -23.43259 -22.22172 -20.79931 -19.85355 -19.07267 -18.46875 -17.44985 -17.19048 -17.02959 -16.39689 -15.89505 -15.72406 -15.12562 -14.99828 -14.75301 -14.41516 -13.97013 -13.63935 -13.55675 -13.34944 -13.05927 -12.78259 -12.23254 -12.19272 -12.05098 -12.00663 -11.91443 -11.74136 -11.64911 -11.32050 -11.15928 -11.01840 -10.87883 -10.79303 -10.67705 -10.59851 -10.24546 -10.07467 -9.90234 -9.65431 -8.89433 -8.68144 -7.98540 -6.95051 -5.79425 -3.13946 0.06567 2.25817 3.04007 3.34548 3.36087 3.40300 3.43145 3.45686 3.63255 4.03544 4.31095 4.39540 4.61653 4.73590 4.78662 5.01971 5.13635 5.17623 5.20674 5.27678 5.32522 5.38818 5.49944 5.54400 5.59417 5.64184 5.78807 5.82732 5.91892 6.15423 6.25814 6.31580 6.42013 6.50611 6.59635 6.69732 7.40908 7.47442 7.69879 8.06674 8.11759 8.60511 9.07811 9.68698 10.38003 11.32663 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.003273 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.584019 B = 8552.520426 C = 9041.537461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.175 3.825 11 C 0.099 3.901 12 H 0.113 0.887 13 C -0.153 4.153 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.079 3.921 17 N -0.607 5.607 18 C 0.507 3.493 19 O -0.541 6.541 20 C 0.149 3.851 21 N -0.968 5.968 22 C 0.079 3.921 23 C -0.121 4.121 24 C -0.588 4.588 25 S 2.564 3.436 26 O -0.955 6.955 27 O -0.947 6.947 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -13.505 -10.738 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.003 4.003 12 H 0.131 0.869 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.046 4.046 17 N -0.342 5.342 18 C 0.293 3.707 19 O -0.419 6.419 20 C 0.021 3.979 21 N -0.808 5.808 22 C -0.047 4.047 23 C -0.160 4.160 24 C -0.719 4.719 25 S 2.659 3.341 26 O -0.944 6.944 27 O -0.936 6.936 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.163 0.837 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.647 -14.108 -10.443 17.928 hybrid contribution -0.168 1.513 -0.268 1.546 sum -3.815 -12.595 -10.711 16.968 Atomic orbital electron populations 1.69927 1.04957 1.25174 1.56557 1.24816 0.95672 0.97714 1.02081 0.86048 0.78701 0.83737 0.77236 1.20449 1.21823 1.21754 1.19101 0.90443 0.82063 1.44234 0.90081 1.45257 1.01380 0.99291 1.86266 1.21915 0.84606 0.87227 1.01239 1.24342 0.97796 0.97481 0.80699 0.86917 1.24174 0.96825 0.99022 0.99219 1.23153 0.96591 0.86256 0.90763 0.87534 1.23348 0.79950 0.98982 1.02350 1.49290 1.09439 1.60025 1.15470 1.20701 0.86826 0.77857 0.85311 1.90634 1.15252 1.55843 1.80146 1.20747 0.87613 1.01234 0.88350 1.56546 1.44782 1.25111 1.54389 1.21583 0.92670 0.96490 0.93966 1.22381 1.01537 0.93584 0.98514 1.30742 1.22867 1.06321 1.11977 1.06704 0.78474 0.73592 0.75286 1.93645 1.60606 1.77873 1.62291 1.93631 1.86377 1.77876 1.35748 0.93663 0.93520 0.92697 0.91550 0.89800 0.90914 0.92677 0.87308 0.87926 0.90077 0.90204 0.87175 0.88773 0.83750 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.56 55.49 0.59 -25.76 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.00 10.37 -15.06 -0.16 -6.15 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.05 3.02 -156.34 -0.47 -14.52 16 10 C 0.18 4.14 4.76 -1.67 -0.01 4.13 16 11 C 0.10 1.93 5.24 -62.43 -0.33 1.60 16 12 H 0.11 2.16 8.09 -51.93 -0.42 1.74 16 13 C -0.15 -2.59 6.81 -22.31 -0.15 -2.74 16 14 C 0.14 2.55 5.53 -62.56 -0.35 2.21 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C 0.08 1.29 6.00 -1.68 -0.01 1.28 16 17 N -0.61 -11.05 2.96 -156.61 -0.46 -11.51 16 18 C 0.51 9.10 7.97 -10.99 -0.09 9.01 16 19 O -0.54 -11.25 16.81 5.56 0.09 -11.16 16 20 C 0.15 2.03 6.01 -5.20 -0.03 1.99 16 21 N -0.97 -12.16 2.82 -115.59 -0.33 -12.49 16 22 C 0.08 0.76 6.84 -3.97 -0.03 0.73 16 23 C -0.12 -0.81 6.61 -25.27 -0.17 -0.97 16 24 C -0.59 -4.45 7.67 38.52 0.30 -4.15 16 25 S 2.56 31.18 6.19 -107.50 -0.67 30.51 16 26 O -0.95 -13.39 18.14 -57.37 -1.04 -14.43 16 27 O -0.95 -15.48 18.04 -57.37 -1.03 -16.52 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.26 7.68 -51.93 -0.40 0.86 16 30 H 0.05 1.44 7.46 -51.92 -0.39 1.05 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -36.66 353.92 -10.37 -47.03 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.25 Total: 0.52 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.11 Total: 6.67 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.68 Total: -64.28 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.98 Total: -42.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.67 Total: 30.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.66 -10.37 -47.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032434458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.448 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds