Wall clock time and date at job start Tue Mar 31 2020 04:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48504 * 109.47513 * 274.99498 * 3 2 1 5 5 H 1.48496 * 109.47127 * 34.99170 * 3 2 1 6 6 H 1.48498 * 109.47295 * 154.99364 * 3 2 1 7 7 C 1.38815 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 185.05542 * 7 2 1 9 9 N 1.36940 * 119.99605 * 5.04628 * 7 2 1 10 10 C 1.47064 * 136.06132 * 353.52022 * 9 7 2 11 11 C 1.53496 * 87.98278 * 207.15547 * 10 9 7 12 12 C 1.47070 * 136.05310 * 173.57051 * 9 7 2 13 13 H 1.09001 * 113.46373 * 267.68413 * 12 9 7 14 14 C 1.52994 * 113.46973 * 38.06473 * 12 9 7 15 15 N 1.46500 * 109.47107 * 285.49475 * 14 12 9 16 16 C 1.34787 * 119.99861 * 179.97438 * 15 14 12 17 17 O 1.21593 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.47427 * 119.99748 * 179.97438 * 16 15 14 19 19 C 1.38052 * 126.41772 * 0.13979 * 18 16 15 20 20 N 1.34255 * 107.41639 * 180.24762 * 19 18 16 21 21 H 0.97004 * 125.75040 * 179.76492 * 20 19 18 22 22 N 1.39935 * 108.49629 * 359.76742 * 20 19 18 23 23 C 1.30454 * 108.89054 * 359.97438 * 22 20 19 24 24 S 1.76202 * 125.98267 * 179.97438 * 23 22 20 25 25 N 1.65595 * 107.22158 * 330.02385 * 24 23 22 26 26 O 1.42102 * 106.40026 * 83.56304 * 24 23 22 27 27 O 1.42098 * 106.40299 * 216.47992 * 24 23 22 28 28 H 0.97001 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.46626 * 321.93271 * 10 9 7 30 30 H 1.09000 * 113.46508 * 92.37255 * 10 9 7 31 31 H 1.09006 * 114.20142 * 220.34449 * 11 10 9 32 32 H 1.08996 * 114.21095 * 87.52255 * 11 10 9 33 33 H 1.09001 * 109.47334 * 165.49770 * 14 12 9 34 34 H 1.09001 * 109.47522 * 45.49654 * 14 12 9 35 35 H 0.96999 * 120.00389 * 359.97438 * 15 14 12 36 36 H 1.08006 * 126.29029 * 0.02562 * 19 18 16 37 37 H 0.97000 * 120.00233 * 270.00021 * 25 24 23 38 38 H 0.97002 * 120.00327 * 89.99822 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5045 2.6198 0.8029 6 1 3.5965 1.4119 0.5918 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0819 9 7 1.3294 -2.3857 -0.1054 10 6 -0.0822 -2.7981 -0.1161 11 6 0.3666 -4.1563 0.4404 12 6 1.6883 -3.8040 -0.2559 13 1 1.7340 -4.1323 -1.2943 14 6 2.9265 -4.2077 0.5469 15 7 4.1267 -3.6849 -0.1106 16 6 5.3427 -3.9180 0.4222 17 8 5.4435 -4.5626 1.4483 18 6 6.5506 -3.3923 -0.2398 19 6 6.5901 -2.6473 -1.4013 20 7 7.8791 -2.3775 -1.6621 21 1 8.2100 -1.8707 -2.4201 22 7 8.6649 -2.9507 -0.6560 23 6 7.8843 -3.5539 0.1976 24 16 8.4030 -4.4247 1.6388 25 7 9.9070 -5.0420 1.3239 26 8 8.5750 -3.4487 2.6572 27 8 7.5312 -5.5392 1.7698 28 1 -0.4850 0.8401 0.0004 29 1 -0.7054 -2.2304 0.5748 30 1 -0.5090 -2.8587 -1.1172 31 1 -0.1531 -5.0108 0.0067 32 1 0.4307 -4.1948 1.5278 33 1 2.9861 -5.2948 0.6008 34 1 2.8561 -3.7974 1.5543 35 1 4.0464 -3.1710 -0.9293 36 1 5.7403 -2.3412 -1.9936 37 1 9.9967 -5.9253 0.9334 38 1 10.6984 -4.5202 1.5299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038686964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:55 Heat of formation + Delta-G solvation = 28.308403 kcal Electronic energy + Delta-G solvation = -26325.021984 eV Core-core repulsion = 22333.633838 eV Total energy + Delta-G solvation = -3991.388146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.70879 -39.11205 -37.97954 -37.08247 -35.76540 -34.07910 -33.42030 -32.29818 -32.27370 -30.92913 -28.06395 -27.45650 -23.53679 -23.49463 -23.35587 -21.81616 -20.25299 -19.44648 -19.26632 -18.69100 -17.58799 -17.32000 -16.86321 -16.50810 -16.21955 -15.65513 -15.46037 -15.18747 -14.69179 -14.30136 -14.15848 -13.82554 -13.70291 -13.10382 -12.89762 -12.25192 -12.01604 -11.96421 -11.87377 -11.81031 -11.57145 -11.52933 -11.11341 -11.00440 -10.82131 -10.75563 -10.58095 -10.53719 -10.03842 -9.87506 -9.70904 -9.22657 -9.20490 -8.85761 -8.50961 -6.92280 -5.82662 -3.14181 0.30307 1.11331 1.36221 2.25393 3.08503 3.31685 3.38645 3.41207 3.49021 3.54984 3.70124 4.22227 4.39115 4.54173 4.68786 4.96250 5.09806 5.24944 5.37584 5.56296 5.62251 5.75306 5.77929 5.91521 6.14946 6.34485 6.40808 6.55769 6.59523 6.72806 6.75179 6.88741 6.91564 7.21276 7.37064 7.55241 7.87549 7.92898 8.55984 8.98312 9.65631 10.60079 11.35113 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003879 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.153077 B = 7217.524928 C = 8188.433389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.707 5.707 16 C 0.567 3.433 17 O -0.515 6.515 18 C -0.206 4.206 19 C 0.106 3.894 20 N -0.444 5.444 21 H 0.448 0.552 22 N -0.203 5.203 23 C -0.428 4.428 24 S 2.726 3.274 25 N -1.239 6.239 26 O -0.943 6.943 27 O -0.900 6.900 28 H 0.253 0.747 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.201 0.799 37 H 0.420 0.580 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.752 -9.502 -5.835 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.343 4.343 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.357 5.357 16 C 0.352 3.648 17 O -0.392 6.392 18 C -0.222 4.222 19 C -0.046 4.046 20 N -0.153 5.153 21 H 0.294 0.706 22 N -0.029 5.029 23 C -0.675 4.675 24 S 2.801 3.199 25 N -0.912 5.912 26 O -0.932 6.932 27 O -0.888 6.888 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.217 0.783 37 H 0.249 0.751 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 17.325 -9.301 -4.568 20.187 hybrid contribution 0.126 1.762 -1.881 2.580 sum 17.451 -7.539 -6.449 20.074 Atomic orbital electron populations 1.69841 1.05003 1.25318 1.55960 1.24800 0.95606 0.97370 1.02435 0.86223 0.78959 0.84046 0.77361 1.21760 1.21600 1.20574 1.18854 0.90546 0.81417 1.43503 0.90132 1.45653 1.02605 0.99972 1.84556 1.21973 0.88590 0.89159 0.97436 1.23674 0.96949 0.98894 1.00508 1.22428 0.91999 0.87520 0.96168 0.93441 1.21863 0.82894 0.97721 0.97777 1.45707 1.05437 1.55681 1.28913 1.17275 0.82341 0.80429 0.84803 1.90947 1.85991 1.39227 1.23001 1.20136 0.92944 1.09808 0.99302 1.23423 0.88626 0.95634 0.96878 1.46391 1.04888 1.41833 1.22173 0.70584 1.77009 1.18025 1.10443 0.97438 1.35664 0.99569 1.13032 1.19270 1.01733 0.71981 0.73931 0.72252 1.53432 1.25841 1.29750 1.82190 1.93641 1.85483 1.62622 1.51485 1.93741 1.62294 1.49327 1.83484 0.93648 0.91398 0.95605 0.92302 0.90102 0.91783 0.90800 0.76664 0.78269 0.75133 0.75199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 11.62 55.49 0.65 -25.73 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.46 29.56 -169.99 -5.02 16.43 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -5.61 10.54 -15.06 -0.16 -5.77 16 8 H 0.08 2.00 7.61 -52.49 -0.40 1.61 16 9 N -0.60 -14.22 3.65 -177.00 -0.65 -14.86 16 10 C 0.15 3.44 7.31 -8.51 -0.06 3.38 16 11 C -0.16 -2.87 8.03 -26.22 -0.21 -3.08 16 12 C 0.13 2.36 4.10 -72.40 -0.30 2.06 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 15 N -0.71 -11.90 5.32 -61.38 -0.33 -12.22 16 16 C 0.57 10.20 7.81 -12.51 -0.10 10.10 16 17 O -0.52 -10.95 13.40 -18.58 -0.25 -11.20 16 18 C -0.21 -3.07 6.12 -105.07 -0.64 -3.71 16 19 C 0.11 1.12 11.52 -16.56 -0.19 0.93 16 20 N -0.44 -4.04 7.29 30.85 0.22 -3.81 16 21 H 0.45 2.15 8.96 -182.72 -1.64 0.51 16 22 N -0.20 -2.40 12.63 31.51 0.40 -2.00 16 23 C -0.43 -6.03 7.25 -16.98 -0.12 -6.15 16 24 S 2.73 37.44 5.96 -107.50 -0.64 36.80 16 25 N -1.24 -9.53 9.52 60.35 0.57 -8.96 16 26 O -0.94 -16.02 18.02 -57.17 -1.03 -17.05 16 27 O -0.90 -15.31 15.00 -66.91 -1.00 -16.31 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.07 1.70 7.31 -51.93 -0.38 1.32 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.40 5.95 7.40 -40.82 -0.30 5.65 16 36 H 0.20 1.44 7.46 -52.48 -0.39 1.05 16 37 H 0.42 2.24 8.96 -34.47 -0.31 1.93 16 38 H 0.42 2.34 8.96 -34.47 -0.31 2.03 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -39.35 340.80 -9.24 -48.60 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.40 Total: 5.50 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.90 Total: -0.31 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: 0.87 Total: -67.59 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.28 Total: -44.56 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 37.44 SS G_CDS: -0.64 Total: 36.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -39.35 -9.24 -48.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038686964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.904 kcal (2) G-P(sol) polarization free energy of solvation -39.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds