Wall clock time and date at job start Tue Mar 31 2020 04:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48504 * 109.47513 * 274.99498 * 3 2 1 5 5 H 1.48496 * 109.47127 * 34.99170 * 3 2 1 6 6 H 1.48498 * 109.47295 * 154.99364 * 3 2 1 7 7 C 1.38815 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 185.05542 * 7 2 1 9 9 N 1.36940 * 119.99605 * 5.04628 * 7 2 1 10 10 C 1.47064 * 136.06132 * 353.52022 * 9 7 2 11 11 C 1.53496 * 87.98278 * 207.15547 * 10 9 7 12 12 C 1.47070 * 136.05310 * 173.57051 * 9 7 2 13 13 H 1.09001 * 113.46373 * 267.68413 * 12 9 7 14 14 C 1.52994 * 113.46973 * 38.06473 * 12 9 7 15 15 N 1.46500 * 109.47107 * 285.49475 * 14 12 9 16 16 C 1.34787 * 119.99861 * 179.97438 * 15 14 12 17 17 O 1.21593 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.47427 * 119.99748 * 179.97438 * 16 15 14 19 19 C 1.38052 * 126.41772 * 0.13979 * 18 16 15 20 20 N 1.34255 * 107.41639 * 180.24762 * 19 18 16 21 21 H 0.97004 * 125.75040 * 179.76492 * 20 19 18 22 22 N 1.39935 * 108.49629 * 359.76742 * 20 19 18 23 23 C 1.30454 * 108.89054 * 359.97438 * 22 20 19 24 24 S 1.76202 * 125.98267 * 179.97438 * 23 22 20 25 25 N 1.65595 * 107.22158 * 330.02385 * 24 23 22 26 26 O 1.42102 * 106.40026 * 83.56304 * 24 23 22 27 27 O 1.42098 * 106.40299 * 216.47992 * 24 23 22 28 28 H 0.97001 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.46626 * 321.93271 * 10 9 7 30 30 H 1.09000 * 113.46508 * 92.37255 * 10 9 7 31 31 H 1.09006 * 114.20142 * 220.34449 * 11 10 9 32 32 H 1.08996 * 114.21095 * 87.52255 * 11 10 9 33 33 H 1.09001 * 109.47334 * 165.49770 * 14 12 9 34 34 H 1.09001 * 109.47522 * 45.49654 * 14 12 9 35 35 H 0.96999 * 120.00389 * 359.97438 * 15 14 12 36 36 H 1.08006 * 126.29029 * 0.02562 * 19 18 16 37 37 H 0.97000 * 120.00233 * 270.00021 * 25 24 23 38 38 H 0.97002 * 120.00327 * 89.99822 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5045 2.6198 0.8029 6 1 3.5965 1.4119 0.5918 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0819 9 7 1.3294 -2.3857 -0.1054 10 6 -0.0822 -2.7981 -0.1161 11 6 0.3666 -4.1563 0.4404 12 6 1.6883 -3.8040 -0.2559 13 1 1.7340 -4.1323 -1.2943 14 6 2.9265 -4.2077 0.5469 15 7 4.1267 -3.6849 -0.1106 16 6 5.3427 -3.9180 0.4222 17 8 5.4435 -4.5626 1.4483 18 6 6.5506 -3.3923 -0.2398 19 6 6.5901 -2.6473 -1.4013 20 7 7.8791 -2.3775 -1.6621 21 1 8.2100 -1.8707 -2.4201 22 7 8.6649 -2.9507 -0.6560 23 6 7.8843 -3.5539 0.1976 24 16 8.4030 -4.4247 1.6388 25 7 9.9070 -5.0420 1.3239 26 8 8.5750 -3.4487 2.6572 27 8 7.5312 -5.5392 1.7698 28 1 -0.4850 0.8401 0.0004 29 1 -0.7054 -2.2304 0.5748 30 1 -0.5090 -2.8587 -1.1172 31 1 -0.1531 -5.0108 0.0067 32 1 0.4307 -4.1948 1.5278 33 1 2.9861 -5.2948 0.6008 34 1 2.8561 -3.7974 1.5543 35 1 4.0464 -3.1710 -0.9293 36 1 5.7403 -2.3412 -1.9936 37 1 9.9967 -5.9253 0.9334 38 1 10.6984 -4.5202 1.5299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038686964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:54 Heat of formation + Delta-G solvation = -7.286064 kcal Electronic energy + Delta-G solvation = -26326.565476 eV Core-core repulsion = 22333.633838 eV Total energy + Delta-G solvation = -3992.931638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66005 -40.54345 -39.54091 -38.26729 -36.94471 -35.51543 -34.22362 -34.19916 -33.23022 -32.00128 -29.91044 -28.92009 -25.35259 -24.68219 -24.39968 -23.23080 -21.49792 -20.98102 -20.33066 -19.85316 -18.51559 -18.41014 -18.28282 -17.55564 -17.50756 -17.09329 -16.83555 -16.57337 -15.98305 -15.73452 -15.48539 -15.39499 -14.94727 -14.59940 -14.39259 -13.59260 -13.35504 -13.32370 -13.17928 -13.09830 -12.92368 -12.90543 -12.66271 -12.58014 -12.54603 -12.29577 -11.83243 -11.60936 -11.53131 -11.39750 -11.25405 -10.81860 -10.81231 -10.28869 -9.87864 -8.84114 -7.85736 -5.15980 -0.72222 0.17815 0.31380 1.43684 1.46871 1.47801 1.54403 2.13274 2.24604 2.28963 2.49664 2.66468 3.24152 3.36487 3.49026 3.63679 3.75295 3.96409 4.00577 4.12919 4.24826 4.40660 4.63183 4.71019 4.77062 4.93589 5.10528 5.16284 5.19896 5.38247 5.49610 5.62696 5.68927 5.78743 5.99593 6.05191 6.36386 6.58581 6.96725 7.25752 7.67624 8.68516 9.32888 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003879 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.153077 B = 7217.524928 C = 8188.433389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.205 4.205 8 H 0.090 0.910 9 N -0.629 5.629 10 C 0.146 3.854 11 C -0.138 4.138 12 C 0.136 3.864 13 H 0.076 0.924 14 C 0.129 3.871 15 N -0.702 5.702 16 C 0.563 3.437 17 O -0.558 6.558 18 C -0.250 4.250 19 C 0.136 3.864 20 N -0.421 5.421 21 H 0.470 0.530 22 N -0.199 5.199 23 C -0.444 4.444 24 S 2.741 3.259 25 N -1.212 6.212 26 O -0.984 6.984 27 O -0.940 6.940 28 H 0.244 0.756 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.409 0.591 36 H 0.238 0.762 37 H 0.434 0.566 38 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.650 -9.988 -8.069 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.794 3.206 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.198 1.198 7 C -0.333 4.333 8 H 0.108 0.892 9 N -0.355 5.355 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.030 3.970 13 H 0.093 0.907 14 C 0.004 3.996 15 N -0.353 5.353 16 C 0.349 3.651 17 O -0.437 6.437 18 C -0.267 4.267 19 C -0.017 4.017 20 N -0.133 5.133 21 H 0.321 0.679 22 N -0.025 5.025 23 C -0.692 4.692 24 S 2.818 3.182 25 N -0.892 5.892 26 O -0.973 6.973 27 O -0.928 6.928 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.245 0.755 36 H 0.254 0.746 37 H 0.266 0.734 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 19.295 -9.808 -6.847 22.702 hybrid contribution -0.389 1.863 -1.269 2.288 sum 18.905 -7.945 -8.116 22.055 Atomic orbital electron populations 1.70024 1.06389 1.25146 1.58664 1.25527 0.96322 1.00436 1.03913 0.85262 0.77760 0.80264 0.77333 1.20840 1.23217 1.19760 1.19222 0.91100 0.82380 1.40634 0.89247 1.45957 1.03541 1.01323 1.84664 1.21979 0.87783 0.91366 0.96804 1.23513 0.96071 0.97667 1.00377 1.22562 0.92524 0.84414 0.97516 0.90700 1.21664 0.83310 0.98538 0.96101 1.45612 1.04902 1.55664 1.29093 1.17712 0.83276 0.79725 0.84348 1.90924 1.86671 1.41209 1.24918 1.20024 0.92008 1.12951 1.01672 1.23868 0.89895 0.92858 0.95101 1.46445 1.04321 1.40591 1.21896 0.67924 1.76965 1.18027 1.10008 0.97519 1.35505 0.99771 1.14064 1.19850 1.00788 0.72532 0.72912 0.72014 1.52853 1.24190 1.30307 1.81866 1.93582 1.86303 1.63745 1.53696 1.93686 1.64321 1.50440 1.84340 0.94663 0.95215 0.95685 0.88205 0.90462 0.90101 0.93989 0.75460 0.74600 0.73368 0.73541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.23 11.62 21.65 0.25 -55.98 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 44.27 29.56 68.60 2.03 46.30 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.21 -10.53 10.54 84.03 0.89 -9.65 16 8 H 0.09 4.32 7.61 -2.91 -0.02 4.30 16 9 N -0.63 -29.22 3.65 -713.92 -2.60 -31.82 16 10 C 0.15 6.51 7.31 83.18 0.61 7.12 16 11 C -0.14 -4.62 8.03 30.93 0.25 -4.37 16 12 C 0.14 4.76 4.10 41.79 0.17 4.93 16 13 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.13 4.46 5.52 86.38 0.48 4.94 16 15 N -0.70 -22.49 5.32 -466.38 -2.48 -24.97 16 16 C 0.56 19.88 7.81 86.66 0.68 20.55 16 17 O -0.56 -24.13 13.40 18.81 0.25 -23.88 16 18 C -0.25 -7.04 6.12 -20.15 -0.12 -7.16 16 19 C 0.14 2.39 11.52 84.28 0.97 3.36 16 20 N -0.42 -6.03 7.29 -56.31 -0.41 -6.44 16 21 H 0.47 2.35 8.96 -213.42 -1.91 0.43 16 22 N -0.20 -4.17 12.63 -54.23 -0.69 -4.85 16 23 C -0.44 -11.93 7.25 85.65 0.62 -11.31 16 24 S 2.74 75.25 5.96 -56.49 -0.34 74.91 16 25 N -1.21 -17.07 9.52 37.02 0.35 -16.72 16 26 O -0.98 -34.02 18.02 -128.00 -2.31 -36.33 16 27 O -0.94 -32.69 15.00 -118.69 -1.78 -34.47 16 28 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.03 1.53 7.31 -2.39 -0.02 1.51 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.08 2.66 8.12 -2.39 -0.02 2.65 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.41 11.11 7.40 -92.71 -0.69 10.42 16 36 H 0.24 2.23 7.46 -2.91 -0.02 2.21 16 37 H 0.43 3.91 8.96 -96.75 -0.87 3.04 16 38 H 0.43 4.07 8.96 -96.74 -0.87 3.20 16 Total: -1.00 -88.70 340.80 -5.88 -94.58 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -3.16 Total: 14.55 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.00 Total: 5.11 kcal Atomic # 7 Polarization: -135.20 SS G_CDS: -5.58 Total: -140.77 kcal Atomic # 8 Polarization: -90.84 SS G_CDS: -3.83 Total: -94.68 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 75.25 SS G_CDS: -0.34 Total: 74.91 kcal Total: -88.70 -5.88 -94.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038686964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.294 kcal (2) G-P(sol) polarization free energy of solvation -88.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds