Wall clock time and date at job start Tue Mar 31 2020 05:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47126 * 274.81450 * 3 2 1 5 5 H 1.48501 * 109.47139 * 34.81372 * 3 2 1 6 6 H 1.48497 * 109.47298 * 154.81445 * 3 2 1 7 7 C 1.38810 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99729 * 187.60446 * 7 2 1 9 9 N 1.36936 * 120.00426 * 7.60659 * 7 2 1 10 10 C 1.47586 * 134.48900 * 7.05539 * 9 7 2 11 11 C 1.53944 * 86.11504 * 155.35993 * 10 9 7 12 12 C 1.47578 * 134.49703 * 187.05908 * 9 7 2 13 13 H 1.08990 * 113.87442 * 90.32539 * 12 9 7 14 14 C 1.53002 * 113.76586 * 318.93453 * 12 9 7 15 15 N 1.46509 * 109.46791 * 78.51035 * 14 12 9 16 16 C 1.34769 * 120.00081 * 180.02562 * 15 14 12 17 17 O 1.21602 * 119.99975 * 359.97438 * 16 15 14 18 18 C 1.47428 * 120.00349 * 179.97438 * 16 15 14 19 19 C 1.38047 * 126.41191 * 0.12825 * 18 16 15 20 20 N 1.34260 * 107.41599 * 180.25186 * 19 18 16 21 21 H 0.96996 * 125.75172 * 179.76919 * 20 19 18 22 22 N 1.39935 * 108.49378 * 359.76934 * 20 19 18 23 23 C 1.30451 * 108.89366 * 359.97438 * 22 20 19 24 24 S 1.76200 * 125.98728 * 179.97438 * 23 22 20 25 25 N 1.65607 * 107.21762 * 90.02193 * 24 23 22 26 26 O 1.42106 * 106.40101 * 336.48527 * 24 23 22 27 27 O 1.42100 * 106.40358 * 203.56068 * 24 23 22 28 28 H 0.97000 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.76772 * 41.06146 * 10 9 7 30 30 H 1.09001 * 113.86798 * 269.67350 * 10 9 7 31 31 H 1.09002 * 113.73977 * 269.26199 * 11 10 9 32 32 H 1.09003 * 113.83942 * 137.96607 * 11 10 9 33 33 H 1.08996 * 109.47679 * 318.50829 * 14 12 9 34 34 H 1.08997 * 109.47376 * 198.50224 * 14 12 9 35 35 H 0.97003 * 119.99613 * 359.97438 * 15 14 12 36 36 H 1.08001 * 126.29172 * 0.02690 * 19 18 16 37 37 H 0.97001 * 119.99832 * 150.00422 * 25 24 23 38 38 H 0.97000 * 119.99827 * 329.72373 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3961 2.1052 -1.3951 5 1 1.5024 2.6212 0.7993 6 1 3.5950 1.4129 0.5958 7 6 2.0103 -1.2022 -0.0005 8 1 3.0832 -1.2063 0.1232 9 7 1.3347 -2.3828 -0.1580 10 6 -0.0617 -2.7412 -0.4741 11 6 0.5097 -4.0672 -1.0079 12 6 1.7103 -3.8078 -0.0799 13 1 1.5983 -4.2396 0.9146 14 6 3.0637 -4.1247 -0.7194 15 7 4.1394 -3.7340 0.1953 16 6 5.4262 -3.9202 -0.1593 17 8 5.6945 -4.4130 -1.2381 18 6 6.5088 -3.5266 0.7609 19 6 6.3566 -2.9614 2.0111 20 7 7.5854 -2.7535 2.5104 21 1 7.7871 -2.3634 3.3753 22 7 8.5260 -3.1946 1.5729 23 6 7.8962 -3.6599 0.5295 24 16 8.6448 -4.3295 -0.9182 25 7 8.8312 -5.9556 -0.6663 26 8 9.9541 -3.7809 -0.9833 27 8 7.6916 -4.1920 -1.9631 28 1 -0.4849 0.8401 0.0004 29 1 -0.5123 -2.1153 -1.2444 30 1 -0.6966 -2.8582 0.4041 31 1 0.7610 -4.0416 -2.0682 32 1 -0.0775 -4.9430 -0.7314 33 1 3.1625 -3.5721 -1.6536 34 1 3.1288 -5.1939 -0.9211 35 1 3.9254 -3.3406 1.0557 36 1 5.4210 -2.7261 2.4967 37 1 8.8039 -6.5690 -1.4172 38 1 8.9717 -6.2943 0.2317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038686967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:00 Heat of formation + Delta-G solvation = 32.063940 kcal Electronic energy + Delta-G solvation = -26350.163598 eV Core-core repulsion = 22358.938304 eV Total energy + Delta-G solvation = -3991.225294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.75252 -39.05086 -37.84080 -36.93809 -35.70364 -34.04155 -33.27326 -32.33943 -32.23585 -30.95638 -28.00984 -27.49639 -23.57405 -23.44973 -23.39370 -21.93563 -20.18495 -19.37605 -19.28677 -18.65998 -17.59517 -17.31586 -16.85954 -16.28903 -16.04254 -15.54306 -15.46808 -15.15003 -14.95504 -14.32610 -14.14218 -13.79315 -13.71356 -13.11607 -12.91840 -12.15302 -11.95021 -11.91524 -11.82091 -11.75818 -11.46897 -11.36747 -11.17117 -11.04957 -10.78718 -10.68668 -10.53606 -10.53556 -10.06047 -9.77525 -9.59850 -9.33159 -9.22246 -8.79565 -8.50516 -6.92943 -5.82294 -3.12876 0.30004 1.06452 1.31067 2.27853 3.09337 3.33963 3.39840 3.42499 3.48122 3.57084 3.71798 3.98598 4.39851 4.51666 4.79860 5.04054 5.17106 5.22663 5.36850 5.59312 5.59621 5.73260 5.86821 5.91002 6.10900 6.32808 6.38985 6.53914 6.59912 6.72840 6.73753 6.90650 6.94439 7.19833 7.38787 7.52738 7.88763 7.93738 8.60385 9.00201 9.67217 10.56869 11.35640 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003844 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.506604 B = 7281.428656 C = 8165.642781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.165 3.835 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.048 0.952 14 C 0.126 3.874 15 N -0.711 5.711 16 C 0.558 3.442 17 O -0.492 6.492 18 C -0.202 4.202 19 C 0.101 3.899 20 N -0.443 5.443 21 H 0.449 0.551 22 N -0.187 5.187 23 C -0.434 4.434 24 S 2.718 3.282 25 N -1.241 6.241 26 O -0.955 6.955 27 O -0.892 6.892 28 H 0.253 0.747 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.200 0.800 37 H 0.423 0.577 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -12.728 6.341 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.040 3.960 11 C -0.195 4.195 12 C 0.017 3.983 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.362 5.362 16 C 0.342 3.658 17 O -0.367 6.367 18 C -0.219 4.219 19 C -0.050 4.050 20 N -0.152 5.152 21 H 0.295 0.705 22 N -0.013 5.013 23 C -0.681 4.681 24 S 2.795 3.205 25 N -0.916 5.916 26 O -0.944 6.944 27 O -0.880 6.880 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.217 0.783 37 H 0.254 0.746 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 14.137 -11.809 5.311 19.171 hybrid contribution -0.742 1.114 1.782 2.229 sum 13.395 -10.695 7.093 18.551 Atomic orbital electron populations 1.69844 1.04967 1.25304 1.56309 1.24774 0.95543 0.97455 1.02456 0.86218 0.78448 0.83954 0.77748 1.21499 1.21830 1.20872 1.18948 0.90515 0.82121 1.43234 0.90347 1.46146 1.06152 0.98576 1.81877 1.22061 0.87751 0.89514 0.96676 1.23769 0.97235 0.98956 0.99562 1.22501 0.91798 0.87754 0.96233 0.93436 1.21770 0.85391 0.99022 0.93670 1.45749 1.04943 1.63906 1.21599 1.17334 0.82090 0.80347 0.86025 1.91060 1.82239 1.42684 1.20674 1.20258 0.92259 1.12527 0.96805 1.23461 0.90771 0.96267 0.94494 1.46504 1.04241 1.47003 1.17476 0.70488 1.77174 1.14187 1.12318 0.97648 1.35291 1.02588 1.13388 1.16864 1.01833 0.73734 0.72710 0.72244 1.53037 1.92687 1.27779 1.18077 1.93624 1.38561 1.77543 1.84685 1.93858 1.60608 1.84183 1.49306 0.93681 0.92176 0.95071 0.90431 0.92722 0.90707 0.91919 0.76909 0.78305 0.74630 0.76079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 11.77 55.49 0.65 -25.75 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.74 29.56 -169.99 -5.02 16.71 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -5.73 10.49 -15.06 -0.16 -5.89 16 8 H 0.08 1.96 7.80 -52.48 -0.41 1.55 16 9 N -0.60 -14.08 3.56 -170.75 -0.61 -14.69 16 10 C 0.17 3.66 7.31 -2.97 -0.02 3.64 16 11 C -0.16 -2.72 7.86 -25.81 -0.20 -2.92 16 12 C 0.12 2.26 4.33 -66.86 -0.29 1.97 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.13 2.17 5.54 -4.04 -0.02 2.14 16 15 N -0.71 -11.27 5.50 -61.38 -0.34 -11.61 16 16 C 0.56 9.30 7.81 -12.52 -0.10 9.20 16 17 O -0.49 -9.65 12.78 -19.82 -0.25 -9.90 16 18 C -0.20 -2.80 6.12 -105.07 -0.64 -3.44 16 19 C 0.10 1.01 11.52 -16.56 -0.19 0.82 16 20 N -0.44 -3.96 7.29 30.85 0.22 -3.74 16 21 H 0.45 2.14 8.96 -182.73 -1.64 0.50 16 22 N -0.19 -2.32 12.63 31.51 0.40 -1.92 16 23 C -0.43 -5.91 7.30 -16.98 -0.12 -6.04 16 24 S 2.72 36.51 6.28 -107.50 -0.68 35.83 16 25 N -1.24 -10.61 9.52 60.35 0.57 -10.03 16 26 O -0.96 -15.08 18.02 -57.17 -1.03 -16.11 16 27 O -0.89 -15.55 13.99 -67.38 -0.94 -16.49 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.06 1.48 7.69 -51.93 -0.40 1.08 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 5.61 7.40 -40.82 -0.30 5.31 16 36 H 0.20 1.32 7.46 -52.49 -0.39 0.93 16 37 H 0.42 2.86 8.96 -34.48 -0.31 2.55 16 38 H 0.41 2.48 8.96 -34.48 -0.31 2.17 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -39.13 340.34 -9.17 -48.30 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.43 Total: 5.02 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.85 Total: -0.75 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: 0.90 Total: -67.75 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -2.23 Total: -42.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 36.51 SS G_CDS: -0.68 Total: 35.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -39.13 -9.17 -48.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038686967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.361 kcal (2) G-P(sol) polarization free energy of solvation -39.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds