Wall clock time and date at job start Tue Mar 31 2020 04:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47126 * 274.81450 * 3 2 1 5 5 H 1.48501 * 109.47139 * 34.81372 * 3 2 1 6 6 H 1.48497 * 109.47298 * 154.81445 * 3 2 1 7 7 C 1.38810 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99729 * 187.60446 * 7 2 1 9 9 N 1.36936 * 120.00426 * 7.60659 * 7 2 1 10 10 C 1.47586 * 134.48900 * 7.05539 * 9 7 2 11 11 C 1.53944 * 86.11504 * 155.35993 * 10 9 7 12 12 C 1.47578 * 134.49703 * 187.05908 * 9 7 2 13 13 H 1.08990 * 113.87442 * 90.32539 * 12 9 7 14 14 C 1.53002 * 113.76586 * 318.93453 * 12 9 7 15 15 N 1.46509 * 109.46791 * 78.51035 * 14 12 9 16 16 C 1.34769 * 120.00081 * 180.02562 * 15 14 12 17 17 O 1.21602 * 119.99975 * 359.97438 * 16 15 14 18 18 C 1.47428 * 120.00349 * 179.97438 * 16 15 14 19 19 C 1.38047 * 126.41191 * 0.12825 * 18 16 15 20 20 N 1.34260 * 107.41599 * 180.25186 * 19 18 16 21 21 H 0.96996 * 125.75172 * 179.76919 * 20 19 18 22 22 N 1.39935 * 108.49378 * 359.76934 * 20 19 18 23 23 C 1.30451 * 108.89366 * 359.97438 * 22 20 19 24 24 S 1.76200 * 125.98728 * 179.97438 * 23 22 20 25 25 N 1.65607 * 107.21762 * 90.02193 * 24 23 22 26 26 O 1.42106 * 106.40101 * 336.48527 * 24 23 22 27 27 O 1.42100 * 106.40358 * 203.56068 * 24 23 22 28 28 H 0.97000 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.76772 * 41.06146 * 10 9 7 30 30 H 1.09001 * 113.86798 * 269.67350 * 10 9 7 31 31 H 1.09002 * 113.73977 * 269.26199 * 11 10 9 32 32 H 1.09003 * 113.83942 * 137.96607 * 11 10 9 33 33 H 1.08996 * 109.47679 * 318.50829 * 14 12 9 34 34 H 1.08997 * 109.47376 * 198.50224 * 14 12 9 35 35 H 0.97003 * 119.99613 * 359.97438 * 15 14 12 36 36 H 1.08001 * 126.29172 * 0.02690 * 19 18 16 37 37 H 0.97001 * 119.99832 * 150.00422 * 25 24 23 38 38 H 0.97000 * 119.99827 * 329.72373 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3961 2.1052 -1.3951 5 1 1.5024 2.6212 0.7993 6 1 3.5950 1.4129 0.5958 7 6 2.0103 -1.2022 -0.0005 8 1 3.0832 -1.2063 0.1232 9 7 1.3347 -2.3828 -0.1580 10 6 -0.0617 -2.7412 -0.4741 11 6 0.5097 -4.0672 -1.0079 12 6 1.7103 -3.8078 -0.0799 13 1 1.5983 -4.2396 0.9146 14 6 3.0637 -4.1247 -0.7194 15 7 4.1394 -3.7340 0.1953 16 6 5.4262 -3.9202 -0.1593 17 8 5.6945 -4.4130 -1.2381 18 6 6.5088 -3.5266 0.7609 19 6 6.3566 -2.9614 2.0111 20 7 7.5854 -2.7535 2.5104 21 1 7.7871 -2.3634 3.3753 22 7 8.5260 -3.1946 1.5729 23 6 7.8962 -3.6599 0.5295 24 16 8.6448 -4.3295 -0.9182 25 7 8.8312 -5.9556 -0.6663 26 8 9.9541 -3.7809 -0.9833 27 8 7.6916 -4.1920 -1.9631 28 1 -0.4849 0.8401 0.0004 29 1 -0.5123 -2.1153 -1.2444 30 1 -0.6966 -2.8582 0.4041 31 1 0.7610 -4.0416 -2.0682 32 1 -0.0775 -4.9430 -0.7314 33 1 3.1625 -3.5721 -1.6536 34 1 3.1288 -5.1939 -0.9211 35 1 3.9254 -3.3406 1.0557 36 1 5.4210 -2.7261 2.4967 37 1 8.8039 -6.5690 -1.4172 38 1 8.9717 -6.2943 0.2317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038686967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:59 Heat of formation + Delta-G solvation = -2.995306 kcal Electronic energy + Delta-G solvation = -26351.683881 eV Core-core repulsion = 22358.938304 eV Total energy + Delta-G solvation = -3992.745577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.67259 -40.39415 -39.36762 -38.09746 -36.86606 -35.40197 -34.17340 -34.08201 -33.24772 -31.99414 -29.83484 -28.92495 -25.24284 -24.69883 -24.46955 -23.28119 -21.37359 -20.84209 -20.30557 -19.83575 -18.51275 -18.39994 -18.30988 -17.48112 -17.09202 -17.05630 -16.75827 -16.44253 -16.02304 -15.85682 -15.46143 -15.37929 -14.92271 -14.59581 -14.30428 -13.51324 -13.22601 -13.21330 -13.05899 -12.98382 -12.97250 -12.89607 -12.62054 -12.58165 -12.43009 -12.22772 -11.81924 -11.55161 -11.45665 -11.34160 -11.25920 -10.78340 -10.69423 -10.23062 -9.80916 -8.83929 -7.85803 -5.14413 -0.70271 0.12391 0.35306 1.42240 1.47889 1.52385 1.52698 2.10924 2.31332 2.39949 2.49959 2.70235 3.03243 3.38095 3.42936 3.76414 3.82744 4.02318 4.16154 4.20646 4.28105 4.45034 4.64716 4.74802 4.81871 4.94342 5.12523 5.21152 5.24430 5.38016 5.57622 5.64176 5.71063 5.81873 6.00193 6.04354 6.34969 6.68232 6.99077 7.38818 7.69599 8.65592 9.32784 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003844 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.506604 B = 7281.428656 C = 8165.642781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.301 1.301 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.207 4.207 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.156 3.844 11 C -0.132 4.132 12 C 0.134 3.866 13 H 0.075 0.925 14 C 0.134 3.866 15 N -0.707 5.707 16 C 0.556 3.444 17 O -0.528 6.528 18 C -0.238 4.238 19 C 0.132 3.868 20 N -0.420 5.420 21 H 0.469 0.531 22 N -0.201 5.201 23 C -0.443 4.443 24 S 2.735 3.265 25 N -1.221 6.221 26 O -0.986 6.986 27 O -0.937 6.937 28 H 0.244 0.756 29 H 0.023 0.977 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.407 0.593 36 H 0.238 0.762 37 H 0.433 0.567 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.610 -14.080 8.472 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.230 1.230 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.336 4.336 8 H 0.105 0.895 9 N -0.354 5.354 10 C 0.031 3.969 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.359 5.359 16 C 0.342 3.658 17 O -0.405 6.405 18 C -0.254 4.254 19 C -0.021 4.021 20 N -0.132 5.132 21 H 0.320 0.680 22 N -0.027 5.027 23 C -0.691 4.691 24 S 2.814 3.186 25 N -0.902 5.902 26 O -0.975 6.975 27 O -0.925 6.925 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.242 0.758 36 H 0.254 0.746 37 H 0.266 0.734 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.170 -13.200 7.486 21.457 hybrid contribution -1.024 1.447 1.204 2.143 sum 14.146 -11.753 8.690 20.341 Atomic orbital electron populations 1.70001 1.06254 1.25075 1.59040 1.25440 0.96208 1.00272 1.04131 0.85345 0.78212 0.80769 0.76748 1.22961 1.22430 1.18882 1.19314 0.91094 0.83199 1.40015 0.89495 1.46489 1.06914 1.00098 1.81908 1.22035 0.87388 0.91744 0.95743 1.23574 0.96443 0.97690 0.99381 1.22671 0.92478 0.84446 0.97572 0.90726 1.21550 0.85363 0.99779 0.92388 1.45654 1.04567 1.63930 1.21699 1.17683 0.82600 0.79563 0.85957 1.91048 1.82779 1.44353 1.22348 1.20093 0.91439 1.15575 0.98283 1.23934 0.92091 0.93239 0.92832 1.46532 1.03500 1.45486 1.17652 0.67984 1.77139 1.15085 1.12584 0.97912 1.35022 1.02759 1.14274 1.17086 1.00866 0.72587 0.73438 0.71694 1.52570 1.92141 1.26065 1.19437 1.93587 1.39781 1.78778 1.85347 1.93808 1.61657 1.85291 1.51775 0.94693 0.95822 0.95740 0.90395 0.88687 0.94125 0.89739 0.75780 0.74567 0.73361 0.74321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 11.77 21.65 0.25 -55.86 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.96 44.84 29.56 68.60 2.03 46.86 16 4 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.21 -10.61 10.49 84.03 0.88 -9.73 16 8 H 0.09 4.19 7.80 -2.91 -0.02 4.17 16 9 N -0.63 -28.75 3.56 -694.13 -2.47 -31.22 16 10 C 0.16 6.89 7.31 86.48 0.63 7.52 16 11 C -0.13 -4.28 7.86 31.25 0.25 -4.03 16 12 C 0.13 4.51 4.33 45.09 0.20 4.70 16 13 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 14 C 0.13 4.34 5.54 86.38 0.48 4.82 16 15 N -0.71 -20.76 5.50 -466.37 -2.57 -23.33 16 16 C 0.56 17.73 7.81 86.67 0.68 18.41 16 17 O -0.53 -20.60 12.78 19.96 0.26 -20.34 16 18 C -0.24 -6.06 6.12 -20.15 -0.12 -6.18 16 19 C 0.13 2.11 11.52 84.28 0.97 3.08 16 20 N -0.42 -5.96 7.29 -56.31 -0.41 -6.37 16 21 H 0.47 2.48 8.96 -213.43 -1.91 0.57 16 22 N -0.20 -4.50 12.63 -54.23 -0.69 -5.19 16 23 C -0.44 -11.45 7.30 85.65 0.62 -10.82 16 24 S 2.74 73.09 6.28 -56.49 -0.35 72.74 16 25 N -1.22 -19.66 9.52 37.02 0.35 -19.31 16 26 O -0.99 -31.20 18.02 -128.00 -2.31 -33.51 16 27 O -0.94 -33.38 13.99 -118.24 -1.65 -35.04 16 28 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.02 1.19 7.69 -2.39 -0.02 1.17 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 2.54 8.10 -2.39 -0.02 2.52 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.41 10.13 7.40 -92.71 -0.69 9.44 16 36 H 0.24 1.88 7.46 -2.91 -0.02 1.85 16 37 H 0.43 5.44 8.96 -96.74 -0.87 4.57 16 38 H 0.43 4.43 8.96 -96.74 -0.87 3.57 16 Total: -1.00 -87.34 340.34 -5.67 -93.01 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -3.16 Total: 13.01 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.05 Total: 4.54 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -5.53 Total: -141.27 kcal Atomic # 8 Polarization: -85.18 SS G_CDS: -3.71 Total: -88.89 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 73.09 SS G_CDS: -0.35 Total: 72.74 kcal Total: -87.34 -5.67 -93.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038686967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.016 kcal (2) G-P(sol) polarization free energy of solvation -87.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds