Wall clock time and date at job start Tue Mar 31 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48491 * 109.47168 * 269.99911 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00059 * 3 2 1 6 6 H 1.48502 * 109.46790 * 149.99780 * 3 2 1 7 7 C 1.38808 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99721 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49562 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11674 * 155.35881 * 10 9 7 12 12 C 1.47581 * 134.48842 * 180.02562 * 9 7 2 13 13 H 1.08999 * 113.87717 * 90.32982 * 12 9 7 14 14 C 1.52998 * 113.77390 * 318.94091 * 12 9 7 15 15 N 1.46507 * 109.46887 * 78.50535 * 14 12 9 16 16 C 1.34775 * 119.99732 * 180.02562 * 15 14 12 17 17 O 1.21525 * 120.00184 * 0.02562 * 16 15 14 18 18 C 1.48015 * 119.99674 * 180.02562 * 16 15 14 19 19 C 1.39470 * 119.92635 * 0.33285 * 18 16 15 20 20 C 1.38441 * 120.30952 * 180.27821 * 19 18 16 21 21 C 1.38597 * 119.89866 * 359.40820 * 20 19 18 22 22 C 1.40985 * 120.06339 * 0.28002 * 21 20 19 23 23 C 1.38428 * 119.95648 * 0.02562 * 22 21 20 24 24 C 1.47829 * 105.89262 * 179.97438 * 22 21 20 25 25 O 1.21442 * 125.69379 * 179.97438 * 24 22 21 26 26 N 1.34501 * 108.61787 * 0.02562 * 24 22 21 27 27 C 1.34509 * 111.11159 * 359.97438 * 26 24 22 28 28 O 1.21433 * 125.72702 * 179.97438 * 27 26 24 29 29 H 0.97002 * 120.00307 * 0.02562 * 1 2 3 30 30 H 1.09001 * 113.76837 * 41.05504 * 10 9 7 31 31 H 1.09005 * 113.87148 * 269.67061 * 10 9 7 32 32 H 1.09001 * 113.73771 * 269.25653 * 11 10 9 33 33 H 1.09001 * 113.83804 * 137.96940 * 11 10 9 34 34 H 1.09002 * 109.47241 * 318.51086 * 14 12 9 35 35 H 1.08992 * 109.47601 * 198.50810 * 14 12 9 36 36 H 0.97000 * 119.99863 * 0.02562 * 15 14 12 37 37 H 1.08000 * 119.84239 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.05319 * 179.68959 * 20 19 18 39 39 H 1.08008 * 120.18962 * 180.02562 * 23 22 21 40 40 H 0.97005 * 124.44477 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1033 -2.7573 -0.0005 11 6 0.3471 -4.0829 -0.6409 12 6 1.7202 -3.8100 -0.0005 13 1 1.8326 -4.2367 0.9961 14 6 2.9024 -4.1220 -0.9202 15 7 4.1497 -3.7188 -0.2660 16 6 5.3287 -3.8988 -0.8937 17 8 5.3571 -4.3953 -2.0025 18 6 6.5889 -3.4919 -0.2325 19 6 6.5550 -2.9287 1.0430 20 6 7.7283 -2.5400 1.6665 21 6 8.9440 -2.7221 1.0263 22 6 8.9855 -3.2969 -0.2604 23 6 7.8107 -3.6791 -0.8849 24 6 10.4141 -3.3416 -0.6379 25 8 10.8576 -3.7731 -1.6829 26 7 11.1408 -2.8259 0.3695 27 6 10.3513 -2.4374 1.3869 28 8 10.7296 -1.9377 2.4270 29 1 -0.4851 0.8400 -0.0004 30 1 -0.7169 -2.1390 -0.6557 31 1 -0.5289 -2.8733 0.9962 32 1 0.3590 -4.0620 -1.7307 33 1 -0.1583 -4.9607 -0.2383 34 1 2.7894 -3.5743 -1.8558 35 1 2.9298 -5.1919 -1.1266 36 1 4.1270 -3.3222 0.6190 37 1 5.6085 -2.7907 1.5446 38 1 7.6969 -2.0997 2.6522 39 1 7.8381 -4.1202 -1.8705 40 1 12.1074 -2.7447 0.3632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038942664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:28 Heat of formation + Delta-G solvation = -19.257349 kcal Electronic energy + Delta-G solvation = -26877.750777 eV Core-core repulsion = 22852.396417 eV Total energy + Delta-G solvation = -4025.354360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 9.17 seconds Orbital eigenvalues (eV) -43.41551 -41.19123 -39.91137 -39.72046 -38.91553 -36.88539 -35.68606 -34.17392 -32.68525 -32.35226 -29.87922 -29.29858 -26.56195 -25.74177 -25.24301 -24.03954 -23.45542 -21.77225 -21.58754 -20.83292 -19.38183 -19.17833 -18.49160 -18.23269 -17.62843 -17.25060 -17.05893 -16.83680 -16.45384 -16.23320 -15.81310 -15.66931 -15.49290 -15.30655 -15.17587 -14.88451 -14.61498 -14.25209 -13.88574 -13.48908 -13.23426 -13.04865 -12.90559 -12.65125 -12.57378 -12.23675 -11.88623 -11.81180 -11.72278 -11.64651 -11.49538 -11.40556 -10.98584 -10.78817 -10.54124 -10.43731 -10.03567 -8.83703 -7.82271 -5.13581 -1.34088 -0.33466 0.54652 1.39357 1.47228 1.49563 1.55929 1.67429 1.77335 1.98575 2.44976 2.51691 2.53672 3.02957 3.34654 3.37653 3.42813 3.55164 3.79101 3.94760 4.00208 4.05119 4.19891 4.40934 4.58335 4.65328 4.67584 4.73368 4.77252 4.86971 4.91259 4.98527 5.11590 5.15010 5.17072 5.31017 5.38571 5.41418 5.66459 5.80078 5.91747 6.02691 6.45815 6.56925 6.99428 7.09261 7.70996 8.65211 9.34744 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003162 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.473326 B = 8853.767258 C =10050.471686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.960 3.040 4 H -0.298 1.298 5 H -0.301 1.301 6 H -0.259 1.259 7 C -0.209 4.209 8 H 0.091 0.909 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.133 4.133 12 C 0.134 3.866 13 H 0.078 0.922 14 C 0.130 3.870 15 N -0.699 5.699 16 C 0.552 3.448 17 O -0.573 6.573 18 C -0.112 4.112 19 C -0.045 4.045 20 C -0.035 4.035 21 C -0.123 4.123 22 C -0.158 4.158 23 C 0.007 3.993 24 C 0.589 3.411 25 O -0.487 6.487 26 N -0.664 5.664 27 C 0.589 3.411 28 O -0.479 6.479 29 H 0.243 0.757 30 H 0.035 0.965 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.411 0.589 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.146 0.854 40 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.250 -9.592 5.284 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.790 3.210 4 H -0.226 1.226 5 H -0.228 1.228 6 H -0.184 1.184 7 C -0.338 4.338 8 H 0.109 0.891 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.095 0.905 14 C 0.006 3.994 15 N -0.350 5.350 16 C 0.339 3.661 17 O -0.454 6.454 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.054 4.054 21 C -0.127 4.127 22 C -0.162 4.162 23 C -0.012 4.012 24 C 0.377 3.623 25 O -0.360 6.360 26 N -0.332 5.332 27 C 0.377 3.623 28 O -0.351 6.351 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.249 0.751 37 H 0.187 0.813 38 H 0.197 0.803 39 H 0.164 0.836 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 16.626 -9.586 4.521 19.717 hybrid contribution 0.489 1.543 0.111 1.623 sum 17.115 -8.043 4.632 19.470 Atomic orbital electron populations 1.69996 1.06354 1.25022 1.59137 1.25468 0.96280 1.00398 1.04126 0.85341 0.78285 0.80402 0.76971 1.22623 1.22846 1.18350 1.19328 0.90862 0.82860 1.40742 0.89105 1.46414 1.03176 1.00024 1.85933 1.22162 0.87263 0.91827 0.96457 1.23577 0.95339 0.97781 1.00433 1.22687 0.93027 0.84484 0.96995 0.90500 1.21650 0.82051 0.99846 0.95898 1.45834 1.05530 1.62087 1.21534 1.18396 0.84127 0.78476 0.85065 1.90768 1.87698 1.46095 1.20803 1.20072 0.92677 1.02595 0.96181 1.21956 1.00380 0.91846 0.92176 1.21040 0.88103 0.95042 1.01170 1.20766 0.94545 1.01799 0.95554 1.20271 0.93543 1.05542 0.96862 1.20703 0.88597 0.92404 0.99542 1.18210 0.86816 0.75122 0.82111 1.90864 1.78173 1.42700 1.24234 1.44247 1.12990 1.58353 1.17562 1.18266 0.86445 0.75584 0.82000 1.90868 1.80608 1.39240 1.24396 0.94771 0.94613 0.95918 0.90522 0.88825 0.93606 0.89576 0.75117 0.81291 0.80340 0.83647 0.71184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.41 11.38 21.65 0.25 -55.16 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.96 43.46 29.55 68.60 2.03 45.49 16 4 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.21 -10.34 10.51 84.03 0.88 -9.46 16 8 H 0.09 4.12 7.80 -2.91 -0.02 4.10 16 9 N -0.63 -27.86 3.57 -694.13 -2.48 -30.35 16 10 C 0.15 6.38 7.51 86.48 0.65 7.03 16 11 C -0.13 -4.16 7.86 31.25 0.25 -3.92 16 12 C 0.13 4.29 4.33 45.09 0.20 4.48 16 13 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.13 3.91 5.54 86.38 0.48 4.39 16 15 N -0.70 -18.70 5.48 -465.81 -2.55 -21.25 16 16 C 0.55 15.47 7.78 86.84 0.68 16.15 16 17 O -0.57 -20.26 16.34 -3.79 -0.06 -20.32 16 18 C -0.11 -2.40 5.88 -20.02 -0.12 -2.52 16 19 C -0.04 -0.69 9.54 22.62 0.22 -0.48 16 20 C -0.04 -0.47 10.08 22.40 0.23 -0.25 16 21 C -0.12 -2.02 6.41 -19.92 -0.13 -2.15 16 22 C -0.16 -3.03 6.39 -20.02 -0.13 -3.16 16 23 C 0.01 0.16 9.63 22.69 0.22 0.37 16 24 C 0.59 11.30 8.45 86.82 0.73 12.03 16 25 O -0.49 -12.18 18.04 -3.53 -0.06 -12.25 16 26 N -0.66 -9.44 5.76 -432.59 -2.49 -11.93 16 27 C 0.59 9.90 8.47 86.89 0.74 10.64 16 28 O -0.48 -10.20 18.04 -3.50 -0.06 -10.26 16 29 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.04 1.80 7.15 -2.39 -0.02 1.78 16 31 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.41 9.43 6.48 -92.71 -0.60 8.83 16 37 H 0.17 1.97 6.36 -2.91 -0.02 1.95 16 38 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.15 3.40 7.65 -2.91 -0.02 3.38 16 40 H 0.44 3.98 8.96 -92.70 -0.83 3.14 16 Total: -1.00 -72.55 352.94 -0.39 -72.94 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.30 Total: 13.19 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: 5.35 Total: 29.89 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -7.28 Total: -118.69 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.19 Total: -42.83 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.55 -0.39 -72.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038942664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.687 kcal (2) G-P(sol) polarization free energy of solvation -72.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.17 seconds