Wall clock time and date at job start Tue Mar 31 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47097 * 274.98190 * 3 2 1 5 5 H 1.48495 * 109.47416 * 34.98272 * 3 2 1 6 6 H 1.48500 * 109.47001 * 154.98289 * 3 2 1 7 7 C 1.38808 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99457 * 185.05866 * 7 2 1 9 9 N 1.36938 * 120.00404 * 5.05768 * 7 2 1 10 10 C 1.47066 * 136.05709 * 353.51760 * 9 7 2 11 11 C 1.53495 * 87.98575 * 207.15090 * 10 9 7 12 12 C 1.47063 * 136.05500 * 173.55887 * 9 7 2 13 13 H 1.08992 * 113.47080 * 267.68448 * 12 9 7 14 14 C 1.53000 * 113.46827 * 38.07299 * 12 9 7 15 15 N 1.46500 * 109.46895 * 285.49009 * 14 12 9 16 16 C 1.34772 * 119.99775 * 179.97438 * 15 14 12 17 17 O 1.21538 * 120.00383 * 0.02562 * 16 15 14 18 18 C 1.48013 * 119.99976 * 180.02562 * 16 15 14 19 19 C 1.39467 * 119.92483 * 0.25620 * 18 16 15 20 20 C 1.38449 * 120.30899 * 180.28963 * 19 18 16 21 21 C 1.38592 * 119.90057 * 359.72478 * 20 19 18 22 22 C 1.40997 * 120.05962 * 359.97438 * 21 20 19 23 23 C 1.38421 * 119.95934 * 0.02562 * 22 21 20 24 24 C 1.47826 * 105.88771 * 179.97438 * 22 21 20 25 25 O 1.21456 * 125.68740 * 179.97438 * 24 22 21 26 26 N 1.34506 * 108.62494 * 359.97438 * 24 22 21 27 27 C 1.34516 * 111.10384 * 359.97438 * 26 24 22 28 28 O 1.21425 * 125.71686 * 180.02562 * 27 26 24 29 29 H 0.97001 * 120.00059 * 0.02562 * 1 2 3 30 30 H 1.08997 * 113.46338 * 321.93089 * 10 9 7 31 31 H 1.08998 * 113.46488 * 92.36748 * 10 9 7 32 32 H 1.08996 * 114.20699 * 220.34606 * 11 10 9 33 33 H 1.09007 * 114.20536 * 87.51486 * 11 10 9 34 34 H 1.09001 * 109.46747 * 165.48887 * 14 12 9 35 35 H 1.08997 * 109.47073 * 45.49255 * 14 12 9 36 36 H 0.96992 * 120.00028 * 359.97438 * 15 14 12 37 37 H 1.07994 * 119.84515 * 359.97438 * 19 18 16 38 38 H 1.07998 * 120.05038 * 179.69735 * 20 19 18 39 39 H 1.08005 * 120.19236 * 179.97438 * 23 22 21 40 40 H 0.96993 * 124.44921 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0830 9 7 1.3296 -2.3858 -0.1035 10 6 -0.0820 -2.7982 -0.1141 11 6 0.3667 -4.1561 0.4435 12 6 1.6886 -3.8041 -0.2530 13 1 1.7343 -4.1332 -1.2911 14 6 2.9267 -4.2072 0.5504 15 7 4.1270 -3.6848 -0.1074 16 6 5.3428 -3.9174 0.4256 17 8 5.4435 -4.5609 1.4517 18 6 6.5554 -3.3891 -0.2386 19 6 6.4377 -2.6463 -1.4132 20 6 7.5671 -2.1535 -2.0444 21 6 8.8207 -2.3939 -1.5044 22 6 8.9459 -3.1388 -0.3138 23 6 7.8156 -3.6307 0.3159 24 6 10.3946 -3.2033 -0.0273 25 8 10.9049 -3.7635 0.9220 26 7 11.0536 -2.5383 -0.9930 27 6 10.2002 -2.0324 -1.9015 28 8 10.5097 -1.3868 -2.8822 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7053 -2.2300 0.5764 31 1 -0.5088 -2.8595 -1.1152 32 1 -0.1529 -5.0108 0.0104 33 1 0.4307 -4.1936 1.5310 34 1 2.9862 -5.2942 0.6050 35 1 2.8561 -3.7961 1.5574 36 1 4.0467 -3.1716 -0.9265 37 1 5.4614 -2.4590 -1.8350 38 1 7.4714 -1.5830 -2.9563 39 1 7.9071 -4.2021 1.2278 40 1 12.0175 -2.4369 -1.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038942665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:39 Heat of formation + Delta-G solvation = 8.073520 kcal Electronic energy + Delta-G solvation = -26926.083128 eV Core-core repulsion = 22901.913924 eV Total energy + Delta-G solvation = -4024.169204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -42.60088 -40.08289 -39.03116 -38.50589 -37.84416 -36.02482 -34.39719 -32.35850 -31.77753 -31.53899 -28.25670 -27.84985 -25.66547 -24.79242 -23.56670 -23.09511 -22.01282 -20.84768 -20.58410 -19.39813 -18.36959 -18.23040 -17.54801 -16.81227 -16.68730 -16.13000 -15.88742 -15.56137 -15.45755 -14.82121 -14.76570 -14.41047 -14.39942 -14.36735 -13.89840 -13.44007 -13.37960 -13.21342 -12.81087 -12.19672 -12.00755 -11.65610 -11.19490 -11.08589 -11.03538 -10.87102 -10.84273 -10.82938 -10.65650 -10.19007 -9.95196 -9.90836 -9.67511 -9.62081 -9.34521 -8.92188 -8.76323 -6.99324 -5.88443 -3.20898 -0.50518 0.49317 1.38535 2.14560 2.52347 2.71554 3.01465 3.30179 3.35143 3.37078 3.38847 3.47524 3.84103 4.15921 4.33149 4.46956 4.60564 4.76128 4.86093 5.08652 5.28732 5.35261 5.41681 5.46257 5.48730 5.58957 5.63236 5.74692 5.80167 5.96317 5.97929 6.11380 6.21364 6.30477 6.49440 6.56699 6.69812 6.72902 7.13584 7.28505 7.30871 7.48189 7.60977 7.86364 8.23660 8.91582 9.59619 10.52839 11.29062 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.003242 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.225386 B = 8633.659958 C = 9955.378997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.120 3.880 15 N -0.702 5.702 16 C 0.550 3.450 17 O -0.536 6.536 18 C -0.100 4.100 19 C -0.058 4.058 20 C -0.046 4.046 21 C -0.126 4.126 22 C -0.153 4.153 23 C 0.012 3.988 24 C 0.582 3.418 25 O -0.459 6.459 26 N -0.680 5.680 27 C 0.580 3.420 28 O -0.461 6.461 29 H 0.254 0.746 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.282 -7.775 -4.731 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.352 5.352 16 C 0.336 3.664 17 O -0.414 6.414 18 C -0.103 4.103 19 C -0.077 4.077 20 C -0.064 4.064 21 C -0.130 4.130 22 C -0.157 4.157 23 C -0.008 4.008 24 C 0.370 3.630 25 O -0.330 6.330 26 N -0.347 5.347 27 C 0.367 3.633 28 O -0.331 6.331 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.240 0.760 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 14.669 -7.819 -3.971 17.091 hybrid contribution 0.883 1.417 -0.583 1.768 sum 15.552 -6.403 -4.554 17.424 Atomic orbital electron populations 1.69844 1.05055 1.25462 1.55587 1.24812 0.95614 0.97455 1.02144 0.86223 0.78871 0.83884 0.77576 1.21511 1.21623 1.20530 1.18820 0.90490 0.81396 1.44058 0.90176 1.45661 1.02616 0.99881 1.84602 1.21976 0.88578 0.89091 0.97524 1.23682 0.96888 0.99020 1.00444 1.22436 0.91832 0.87735 0.96213 0.93336 1.21927 0.82971 0.97635 0.97881 1.45913 1.05691 1.54810 1.28786 1.18034 0.83169 0.80647 0.84570 1.90786 1.86620 1.40447 1.23596 1.20330 0.94141 0.99720 0.96135 1.21783 0.99711 0.93056 0.93173 1.20749 0.89005 0.96939 0.99734 1.20643 0.94155 1.01123 0.97097 1.20331 0.93733 1.03612 0.98018 1.20783 0.88380 0.93370 0.98231 1.18235 0.87106 0.76730 0.80964 1.90873 1.74775 1.39673 1.27666 1.44419 1.12205 1.52172 1.25864 1.18344 0.86006 0.77474 0.81440 1.90860 1.82632 1.34712 1.24919 0.93559 0.91351 0.95499 0.92241 0.90147 0.91780 0.90684 0.76010 0.83110 0.83095 0.82632 0.72740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.68 11.62 55.49 0.65 -25.04 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.90 20.85 29.56 -169.99 -5.02 15.82 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.22 -5.51 10.54 -15.06 -0.16 -5.66 16 8 H 0.08 1.89 7.61 -52.48 -0.40 1.49 16 9 N -0.60 -13.57 3.65 -176.99 -0.65 -14.22 16 10 C 0.15 3.30 7.31 -8.50 -0.06 3.24 16 11 C -0.16 -2.69 8.03 -26.21 -0.21 -2.90 16 12 C 0.13 2.18 4.10 -72.39 -0.30 1.88 16 13 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.12 1.93 5.52 -4.04 -0.02 1.91 16 15 N -0.70 -10.30 5.28 -61.20 -0.32 -10.63 16 16 C 0.55 8.16 7.78 -12.25 -0.10 8.07 16 17 O -0.54 -9.60 16.34 5.33 0.09 -9.52 16 18 C -0.10 -1.18 5.88 -104.86 -0.62 -1.80 16 19 C -0.06 -0.56 9.54 -39.05 -0.37 -0.93 16 20 C -0.05 -0.40 10.08 -39.37 -0.40 -0.80 16 21 C -0.13 -1.23 6.41 -104.70 -0.67 -1.90 16 22 C -0.15 -1.60 6.39 -104.86 -0.67 -2.27 16 23 C 0.01 0.14 9.63 -38.94 -0.37 -0.24 16 24 C 0.58 6.00 8.45 -12.46 -0.11 5.89 16 25 O -0.46 -5.90 18.04 5.40 0.10 -5.80 16 26 N -0.68 -5.54 5.76 -13.19 -0.08 -5.62 16 27 C 0.58 5.65 8.47 -12.36 -0.10 5.55 16 28 O -0.46 -5.54 18.04 5.43 0.10 -5.44 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.07 1.66 7.31 -51.93 -0.38 1.28 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.40 5.41 6.48 -40.82 -0.26 5.15 16 37 H 0.15 1.24 6.36 -52.49 -0.33 0.91 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.80 7.65 -52.48 -0.40 1.40 16 40 H 0.43 2.37 8.96 -40.82 -0.37 2.01 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.64 352.80 -8.32 -40.96 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.24 Total: 4.29 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -4.25 Total: 9.87 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.40 Total: -55.50 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.28 Total: -20.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.64 -8.32 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038942665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.029 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds