Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47097 * 274.98190 * 3 2 1 5 5 H 1.48495 * 109.47416 * 34.98272 * 3 2 1 6 6 H 1.48500 * 109.47001 * 154.98289 * 3 2 1 7 7 C 1.38808 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99457 * 185.05866 * 7 2 1 9 9 N 1.36938 * 120.00404 * 5.05768 * 7 2 1 10 10 C 1.47066 * 136.05709 * 353.51760 * 9 7 2 11 11 C 1.53495 * 87.98575 * 207.15090 * 10 9 7 12 12 C 1.47063 * 136.05500 * 173.55887 * 9 7 2 13 13 H 1.08992 * 113.47080 * 267.68448 * 12 9 7 14 14 C 1.53000 * 113.46827 * 38.07299 * 12 9 7 15 15 N 1.46500 * 109.46895 * 285.49009 * 14 12 9 16 16 C 1.34772 * 119.99775 * 179.97438 * 15 14 12 17 17 O 1.21538 * 120.00383 * 0.02562 * 16 15 14 18 18 C 1.48013 * 119.99976 * 180.02562 * 16 15 14 19 19 C 1.39467 * 119.92483 * 0.25620 * 18 16 15 20 20 C 1.38449 * 120.30899 * 180.28963 * 19 18 16 21 21 C 1.38592 * 119.90057 * 359.72478 * 20 19 18 22 22 C 1.40997 * 120.05962 * 359.97438 * 21 20 19 23 23 C 1.38421 * 119.95934 * 0.02562 * 22 21 20 24 24 C 1.47826 * 105.88771 * 179.97438 * 22 21 20 25 25 O 1.21456 * 125.68740 * 179.97438 * 24 22 21 26 26 N 1.34506 * 108.62494 * 359.97438 * 24 22 21 27 27 C 1.34516 * 111.10384 * 359.97438 * 26 24 22 28 28 O 1.21425 * 125.71686 * 180.02562 * 27 26 24 29 29 H 0.97001 * 120.00059 * 0.02562 * 1 2 3 30 30 H 1.08997 * 113.46338 * 321.93089 * 10 9 7 31 31 H 1.08998 * 113.46488 * 92.36748 * 10 9 7 32 32 H 1.08996 * 114.20699 * 220.34606 * 11 10 9 33 33 H 1.09007 * 114.20536 * 87.51486 * 11 10 9 34 34 H 1.09001 * 109.46747 * 165.48887 * 14 12 9 35 35 H 1.08997 * 109.47073 * 45.49255 * 14 12 9 36 36 H 0.96992 * 120.00028 * 359.97438 * 15 14 12 37 37 H 1.07994 * 119.84515 * 359.97438 * 19 18 16 38 38 H 1.07998 * 120.05038 * 179.69735 * 20 19 18 39 39 H 1.08005 * 120.19236 * 179.97438 * 23 22 21 40 40 H 0.96993 * 124.44921 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0830 9 7 1.3296 -2.3858 -0.1035 10 6 -0.0820 -2.7982 -0.1141 11 6 0.3667 -4.1561 0.4435 12 6 1.6886 -3.8041 -0.2530 13 1 1.7343 -4.1332 -1.2911 14 6 2.9267 -4.2072 0.5504 15 7 4.1270 -3.6848 -0.1074 16 6 5.3428 -3.9174 0.4256 17 8 5.4435 -4.5609 1.4517 18 6 6.5554 -3.3891 -0.2386 19 6 6.4377 -2.6463 -1.4132 20 6 7.5671 -2.1535 -2.0444 21 6 8.8207 -2.3939 -1.5044 22 6 8.9459 -3.1388 -0.3138 23 6 7.8156 -3.6307 0.3159 24 6 10.3946 -3.2033 -0.0273 25 8 10.9049 -3.7635 0.9220 26 7 11.0536 -2.5383 -0.9930 27 6 10.2002 -2.0324 -1.9015 28 8 10.5097 -1.3868 -2.8822 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7053 -2.2300 0.5764 31 1 -0.5088 -2.8595 -1.1152 32 1 -0.1529 -5.0108 0.0104 33 1 0.4307 -4.1936 1.5310 34 1 2.9862 -5.2942 0.6050 35 1 2.8561 -3.7961 1.5574 36 1 4.0467 -3.1716 -0.9265 37 1 5.4614 -2.4590 -1.8350 38 1 7.4714 -1.5830 -2.9563 39 1 7.9071 -4.2021 1.2278 40 1 12.0175 -2.4369 -1.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038942665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = -16.026815 kcal Electronic energy + Delta-G solvation = -26927.128197 eV Core-core repulsion = 22901.913924 eV Total energy + Delta-G solvation = -4025.214273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.41618 -41.20907 -39.91354 -39.88475 -38.93336 -36.88517 -35.67524 -34.22132 -32.68707 -32.35416 -29.93744 -29.26698 -26.55387 -25.72016 -25.34651 -24.00813 -23.35773 -21.76615 -21.58679 -20.95848 -19.37937 -19.17938 -18.49078 -18.22661 -17.62872 -17.25431 -17.08534 -16.83088 -16.45086 -16.22661 -15.82024 -15.67632 -15.47779 -15.30672 -15.17752 -14.86442 -14.60059 -14.25222 -13.88675 -13.53152 -13.30895 -13.04996 -12.91271 -12.64726 -12.55107 -12.28559 -11.88804 -11.83322 -11.72594 -11.64716 -11.60704 -11.32665 -10.86908 -10.80878 -10.54014 -10.43957 -10.02595 -8.83935 -7.84964 -5.15586 -1.34288 -0.33662 0.54439 1.39207 1.48130 1.49685 1.56927 1.67264 1.77195 1.99121 2.44948 2.51296 2.53417 3.02834 3.35996 3.37404 3.43907 3.57803 3.78977 3.93918 3.98903 4.01314 4.20654 4.39701 4.58248 4.65175 4.68106 4.72652 4.75670 4.86933 4.91806 4.98514 5.10550 5.14828 5.16891 5.30931 5.37596 5.42191 5.62956 5.78061 5.91587 5.99933 6.45944 6.56860 6.96767 7.08973 7.68663 8.68710 9.33564 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.003242 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.225386 B = 8633.659958 C = 9955.378997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.306 1.306 6 H -0.267 1.267 7 C -0.206 4.206 8 H 0.093 0.907 9 N -0.629 5.629 10 C 0.145 3.855 11 C -0.137 4.137 12 C 0.134 3.866 13 H 0.074 0.926 14 C 0.128 3.872 15 N -0.700 5.700 16 C 0.552 3.448 17 O -0.573 6.573 18 C -0.112 4.112 19 C -0.046 4.046 20 C -0.035 4.035 21 C -0.123 4.123 22 C -0.158 4.158 23 C 0.008 3.992 24 C 0.589 3.411 25 O -0.487 6.487 26 N -0.664 5.664 27 C 0.589 3.411 28 O -0.479 6.479 29 H 0.244 0.756 30 H 0.029 0.971 31 H 0.023 0.977 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.411 0.589 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.146 0.854 40 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.774 -8.422 -6.275 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.234 1.234 6 H -0.192 1.192 7 C -0.334 4.334 8 H 0.110 0.890 9 N -0.355 5.355 10 C 0.019 3.981 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.092 0.908 14 C 0.004 3.996 15 N -0.350 5.350 16 C 0.339 3.661 17 O -0.454 6.454 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.054 4.054 21 C -0.127 4.127 22 C -0.162 4.162 23 C -0.012 4.012 24 C 0.378 3.622 25 O -0.360 6.360 26 N -0.331 5.331 27 C 0.377 3.623 28 O -0.351 6.351 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.249 0.751 37 H 0.186 0.814 38 H 0.196 0.804 39 H 0.164 0.836 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 16.210 -8.492 -5.544 19.121 hybrid contribution 0.442 1.537 -0.116 1.603 sum 16.653 -6.956 -5.660 18.914 Atomic orbital electron populations 1.70026 1.06460 1.25159 1.58598 1.25527 0.96279 1.00478 1.03833 0.85293 0.77995 0.80259 0.77294 1.21142 1.23374 1.19188 1.19227 0.91158 0.82305 1.40721 0.88977 1.45972 1.03509 1.01343 1.84675 1.21986 0.87872 0.91507 0.96763 1.23511 0.96057 0.97542 1.00429 1.22569 0.92661 0.84412 0.97542 0.90848 1.21707 0.83088 0.98699 0.96153 1.45847 1.05359 1.54847 1.28928 1.18398 0.83824 0.79840 0.84030 1.90768 1.87164 1.42160 1.25286 1.20077 0.92804 1.01365 0.97297 1.21956 1.00866 0.91653 0.91956 1.21036 0.88047 0.96115 1.00172 1.20764 0.94666 1.00629 0.96610 1.20273 0.93508 1.04001 0.98425 1.20701 0.88736 0.93614 0.98153 1.18206 0.87154 0.76205 0.80671 1.90868 1.75208 1.41009 1.28870 1.44243 1.12882 1.51174 1.24834 1.18258 0.86061 0.76903 0.81060 1.90866 1.82865 1.35646 1.25720 0.94698 0.95234 0.95880 0.88297 0.90268 0.89678 0.93547 0.75126 0.81412 0.80370 0.83594 0.71176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.06 11.62 21.65 0.25 -54.81 16 2 C -0.07 -3.62 5.50 84.86 0.47 -3.16 16 3 Si 0.96 42.99 29.56 68.60 2.03 45.02 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.31 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.21 -10.12 10.54 84.03 0.89 -9.23 16 8 H 0.09 4.18 7.61 -2.91 -0.02 4.16 16 9 N -0.63 -27.80 3.65 -713.87 -2.60 -30.40 16 10 C 0.14 6.17 7.31 83.18 0.61 6.78 16 11 C -0.14 -4.25 8.03 30.93 0.25 -4.00 16 12 C 0.13 4.32 4.10 41.80 0.17 4.49 16 13 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 14 C 0.13 3.86 5.52 86.38 0.48 4.34 16 15 N -0.70 -19.06 5.28 -465.81 -2.46 -21.52 16 16 C 0.55 15.66 7.78 86.84 0.68 16.33 16 17 O -0.57 -20.32 16.34 -3.84 -0.06 -20.38 16 18 C -0.11 -2.46 5.88 -20.02 -0.12 -2.57 16 19 C -0.05 -0.74 9.54 22.62 0.22 -0.52 16 20 C -0.04 -0.50 10.08 22.40 0.23 -0.27 16 21 C -0.12 -2.07 6.41 -19.92 -0.13 -2.19 16 22 C -0.16 -3.06 6.39 -20.02 -0.13 -3.19 16 23 C 0.01 0.17 9.63 22.69 0.22 0.39 16 24 C 0.59 11.39 8.45 86.82 0.73 12.12 16 25 O -0.49 -12.22 18.04 -3.58 -0.06 -12.28 16 26 N -0.66 -9.55 5.76 -432.57 -2.49 -12.04 16 27 C 0.59 10.06 8.47 86.88 0.74 10.79 16 28 O -0.48 -10.32 18.04 -3.48 -0.06 -10.38 16 29 H 0.24 13.95 8.31 -92.71 -0.77 13.17 16 30 H 0.03 1.47 7.31 -2.39 -0.02 1.45 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.50 8.12 -2.38 -0.02 2.48 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.41 9.86 6.48 -92.71 -0.60 9.26 16 37 H 0.17 2.13 6.36 -2.91 -0.02 2.11 16 38 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.15 3.43 7.65 -2.91 -0.02 3.41 16 40 H 0.44 4.04 8.96 -92.71 -0.83 3.21 16 Total: -1.00 -71.91 352.80 -0.48 -72.39 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.30 Total: 14.31 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 5.29 Total: 30.10 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -7.30 Total: -118.77 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.19 Total: -43.04 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -71.91 -0.48 -72.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038942665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.360 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds