Wall clock time and date at job start Tue Mar 31 2020 05:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 119.99757 * 2 1 4 4 O 1.21604 * 119.99793 * 175.21653 * 3 2 1 5 5 C 1.47431 * 120.00162 * 355.21415 * 3 2 1 6 6 C 1.38042 * 126.41170 * 49.57259 * 5 3 2 7 7 N 1.34256 * 107.41442 * 179.97438 * 6 5 3 8 8 H 0.97003 * 125.75479 * 180.02562 * 7 6 5 9 9 N 1.39931 * 108.49378 * 0.02562 * 7 6 5 10 10 C 1.30444 * 108.89660 * 359.74825 * 9 7 6 11 11 S 1.76201 * 125.99046 * 180.26345 * 10 9 7 12 12 N 1.65604 * 107.21733 * 270.14610 * 11 10 9 13 13 O 1.42105 * 106.40149 * 23.68680 * 11 10 9 14 14 O 1.42098 * 106.40662 * 156.60479 * 11 10 9 15 15 C 1.46498 * 120.00579 * 180.02562 * 2 1 3 16 16 C 1.53951 * 113.83597 * 321.35187 * 15 2 1 17 17 N 1.47577 * 86.11590 * 90.74754 * 16 15 2 18 18 C 1.36938 * 134.49034 * 204.64003 * 17 16 15 19 19 H 1.07999 * 120.00051 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00127 * 359.97438 * 18 17 16 21 21 N 1.31617 * 119.99950 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00128 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46828 * 60.00683 * 22 20 18 24 24 H 1.48496 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47291 * 300.00588 * 22 20 18 26 26 C 1.47575 * 91.01996 * 24.64252 * 17 16 15 27 27 H 1.09007 * 109.46796 * 274.43768 * 1 2 3 28 28 H 1.08997 * 109.47295 * 34.43534 * 1 2 3 29 29 H 1.09004 * 109.47031 * 154.44258 * 1 2 3 30 30 H 1.07996 * 126.29114 * 359.97438 * 6 5 3 31 31 H 0.97002 * 119.99831 * 150.00221 * 12 11 10 32 32 H 0.96997 * 119.99807 * 330.00169 * 12 11 10 33 33 H 1.08994 * 112.94628 * 189.66516 * 15 2 1 34 34 H 1.08995 * 113.76810 * 205.05310 * 16 15 2 35 35 H 1.09000 * 113.76600 * 336.44516 * 16 15 2 36 36 H 0.96998 * 120.00306 * 179.97438 * 21 20 18 37 37 H 1.09001 * 113.77034 * 221.06203 * 26 17 16 38 38 H 1.09000 * 113.77308 * 89.65489 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1691 0.0878 5 6 1.4055 2.4418 -0.1065 6 6 0.3140 2.8246 0.6469 7 7 -0.0480 4.0504 0.2359 8 1 -0.7864 4.5714 0.5885 9 7 0.8194 4.4497 -0.7869 10 6 1.6913 3.5022 -0.9954 11 16 2.9953 3.5373 -2.1799 12 7 2.3961 2.9034 -3.5876 13 8 3.2646 4.9082 -2.4397 14 8 3.9823 2.6255 -1.7175 15 6 2.1976 -1.2686 -0.0006 16 6 1.5563 -2.3578 0.8784 17 7 0.8157 -2.7585 -0.3335 18 6 -0.3673 -3.4085 -0.5643 19 1 -0.6977 -3.5852 -1.5772 20 6 -1.1412 -3.8414 0.5037 21 7 -0.7382 -3.6266 1.7381 22 14 -2.7553 -4.7275 0.1890 23 1 -2.4970 -5.9643 -0.5913 24 1 -3.3861 -5.0824 1.4856 25 1 -3.6661 -3.8397 -0.5776 26 6 1.8621 -2.1776 -1.1970 27 1 -0.3633 0.0795 1.0247 28 1 -0.3634 0.8476 -0.5811 29 1 -0.3633 -0.9271 -0.4434 30 1 -0.1613 2.2447 1.4242 31 1 2.7452 3.2028 -4.4416 32 1 1.6959 2.2328 -3.5580 33 1 3.2669 -1.1419 0.1680 34 1 2.2621 -3.1099 1.2309 35 1 0.9207 -1.9643 1.6717 36 1 -1.2791 -3.9288 2.4844 37 1 1.4705 -1.6402 -2.0607 38 1 2.6577 -2.8767 -1.4542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043819638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:27 Heat of formation + Delta-G solvation = 49.455739 kcal Electronic energy + Delta-G solvation = -27021.648991 eV Core-core repulsion = 23031.177862 eV Total energy + Delta-G solvation = -3990.471129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.75679 -39.46819 -37.53094 -37.00523 -35.80777 -34.03203 -33.31439 -32.34582 -32.16158 -30.55723 -27.89023 -26.16493 -24.80578 -24.01105 -23.55841 -22.31921 -20.52948 -19.38267 -18.67538 -17.78934 -17.69086 -17.38238 -16.90768 -16.43578 -15.91478 -15.48068 -15.39680 -15.21487 -14.86207 -14.51356 -13.99566 -13.82840 -13.41198 -12.70712 -12.51932 -12.33463 -12.24198 -12.01216 -11.92172 -11.85770 -11.55491 -11.39908 -11.35692 -11.28584 -10.91682 -10.67527 -10.66210 -10.54090 -10.17471 -9.83066 -9.61986 -9.57038 -9.07551 -8.86046 -7.98390 -6.94023 -5.86257 -3.19392 0.22936 1.10022 1.50543 2.30617 3.01254 3.10855 3.30392 3.36756 3.37495 3.49476 3.59099 4.10237 4.36776 4.60721 4.78395 5.02277 5.12901 5.16136 5.39790 5.56370 5.63602 5.70834 5.85036 6.11012 6.13950 6.22605 6.45527 6.52011 6.59153 6.70878 6.79282 6.90247 6.93924 7.15326 7.30374 7.50063 7.86633 7.95189 8.58838 8.95093 9.60959 10.50605 11.29563 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.003754 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.324296 B = 7457.866398 C = 7918.990108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.573 5.573 3 C 0.559 3.441 4 O -0.495 6.495 5 C -0.196 4.196 6 C 0.098 3.902 7 N -0.443 5.443 8 H 0.449 0.551 9 N -0.183 5.183 10 C -0.442 4.442 11 S 2.719 3.281 12 N -1.244 6.244 13 O -0.954 6.954 14 O -0.900 6.900 15 C 0.090 3.910 16 C 0.153 3.847 17 N -0.609 5.609 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.105 3.895 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.121 0.879 30 H 0.200 0.800 31 H 0.422 0.578 32 H 0.418 0.582 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 14.365 -5.345 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.305 5.305 3 C 0.343 3.657 4 O -0.369 6.369 5 C -0.212 4.212 6 C -0.052 4.052 7 N -0.153 5.153 8 H 0.294 0.706 9 N -0.009 5.009 10 C -0.689 4.689 11 S 2.797 3.203 12 N -0.920 5.920 13 O -0.943 6.943 14 O -0.888 6.888 15 C -0.015 4.015 16 C 0.027 3.973 17 N -0.336 5.336 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.022 4.022 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.217 0.783 31 H 0.252 0.748 32 H 0.246 0.754 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.908 15.722 -5.181 16.579 hybrid contribution -2.251 -1.539 0.435 2.761 sum -1.343 14.183 -4.745 15.016 Atomic orbital electron populations 1.22109 0.78941 1.05099 1.01313 1.47242 1.07222 1.04378 1.71609 1.17367 0.86941 0.82293 0.79055 1.90931 1.12256 1.86459 1.47205 1.20116 1.00754 0.97472 1.02838 1.23416 0.95320 0.87054 0.99397 1.46506 1.26326 1.14194 1.28272 0.70556 1.77136 1.00716 1.19900 1.03163 1.35124 1.17256 0.98186 1.18328 1.01784 0.72242 0.74004 0.72250 1.53071 1.56859 1.58003 1.24028 1.93602 1.82546 1.34098 1.84089 1.93832 1.51295 1.63926 1.79768 1.22938 0.95885 0.83054 0.99630 1.22640 0.92208 0.90442 0.92007 1.46204 1.17835 1.67915 1.01648 1.18952 0.93486 1.30251 0.92666 0.90374 1.24745 0.98948 1.01149 0.95176 1.69804 1.38525 1.50882 0.97213 0.86278 0.83354 0.79795 0.76758 1.21231 1.21633 1.21156 1.23037 0.91573 0.93135 0.94415 0.93279 0.93435 0.86103 0.78327 0.74757 0.75447 0.88319 0.94417 0.90316 0.93562 0.93540 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.36 59.84 0.50 1.58 16 2 N -0.57 -9.85 3.09 -177.01 -0.55 -10.40 16 3 C 0.56 9.65 7.15 -12.51 -0.09 9.56 16 4 O -0.49 -10.21 13.84 -17.87 -0.25 -10.45 16 5 C -0.20 -2.75 4.98 -105.07 -0.52 -3.27 16 6 C 0.10 1.01 10.05 -16.56 -0.17 0.85 16 7 N -0.44 -3.96 7.29 30.85 0.22 -3.73 16 8 H 0.45 2.10 8.96 -182.72 -1.64 0.46 16 9 N -0.18 -2.26 12.63 31.51 0.40 -1.86 16 10 C -0.44 -5.98 7.30 -16.98 -0.12 -6.10 16 11 S 2.72 35.76 6.40 -107.50 -0.69 35.08 16 12 N -1.24 -10.84 9.52 60.35 0.57 -10.27 16 13 O -0.95 -14.50 18.02 -57.17 -1.03 -15.53 16 14 O -0.90 -15.34 14.80 -66.64 -0.99 -16.32 16 15 C 0.09 1.70 4.54 -70.14 -0.32 1.38 16 16 C 0.15 3.36 6.77 -2.97 -0.02 3.34 16 17 N -0.61 -14.03 2.27 -178.09 -0.40 -14.43 16 18 C -0.23 -5.71 9.70 -15.06 -0.15 -5.85 16 19 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 20 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 21 N -0.92 -24.89 11.38 55.49 0.63 -24.26 16 22 Si 0.91 20.50 29.55 -169.99 -5.02 15.48 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.11 2.04 8.38 -2.97 -0.02 2.02 16 27 H 0.05 0.75 7.66 -51.92 -0.40 0.35 16 28 H 0.05 0.61 6.27 -51.93 -0.33 0.28 16 29 H 0.12 2.35 5.14 -51.93 -0.27 2.08 16 30 H 0.20 1.50 7.29 -52.49 -0.38 1.12 16 31 H 0.42 2.65 8.96 -34.47 -0.31 2.34 16 32 H 0.42 3.06 8.96 -34.47 -0.31 2.75 16 33 H 0.10 1.87 7.20 -51.93 -0.37 1.50 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.88 6.90 -51.93 -0.36 1.52 16 36 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -36.71 330.78 -8.30 -45.01 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.18 Total: 3.40 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.01 Total: 3.31 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: 0.88 Total: -64.95 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -2.26 Total: -42.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 35.76 SS G_CDS: -0.69 Total: 35.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.71 -8.30 -45.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043819638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.466 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds