Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48499 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47008 * 299.99808 * 3 2 1 6 6 H 1.48502 * 109.47316 * 59.99886 * 3 2 1 7 7 C 1.38808 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00504 * 0.02562 * 7 2 1 10 10 C 1.46659 * 125.32864 * 0.03093 * 9 7 2 11 11 C 1.53672 * 107.97034 * 180.67230 * 10 9 7 12 12 H 1.09005 * 112.77462 * 253.98499 * 11 10 9 13 13 C 1.54157 * 109.50887 * 126.92810 * 11 10 9 14 14 N 1.46756 * 106.58584 * 277.93971 * 13 11 10 15 15 C 1.34780 * 125.33033 * 161.46135 * 14 13 11 16 16 O 1.21278 * 119.99560 * 179.68769 * 15 14 13 17 17 C 1.50702 * 120.00043 * 359.68859 * 15 14 13 18 18 H 1.08997 * 109.75701 * 40.72607 * 17 15 14 19 19 C 1.54108 * 109.76483 * 279.99724 * 17 15 14 20 20 C 1.54913 * 105.89954 * 194.68767 * 19 17 15 21 21 S 1.83180 * 102.71079 * 25.17017 * 20 19 17 22 22 O 1.42102 * 111.27221 * 109.61696 * 21 20 19 23 23 O 1.42096 * 111.27620 * 248.97014 * 21 20 19 24 24 N 1.47995 * 109.75935 * 161.45877 * 17 15 14 25 25 C 1.46656 * 109.33289 * 341.18779 * 14 13 11 26 26 C 1.53675 * 107.96957 * 0.95650 * 25 14 13 27 27 H 1.08994 * 112.77346 * 253.25385 * 26 25 14 28 28 C 1.46754 * 125.33868 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99712 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.77130 * 300.30474 * 10 9 7 31 31 H 1.09000 * 109.76639 * 61.03363 * 10 9 7 32 32 H 1.09003 * 110.16050 * 158.60414 * 13 11 10 33 33 H 1.08998 * 109.96074 * 37.16213 * 13 11 10 34 34 H 1.09004 * 110.16239 * 75.58290 * 19 17 15 35 35 H 1.09002 * 110.17130 * 313.79937 * 19 17 15 36 36 H 1.08998 * 110.76718 * 266.86760 * 20 19 17 37 37 H 1.09001 * 110.92590 * 143.54611 * 20 19 17 38 38 H 0.96992 * 127.77010 * 343.81454 * 24 17 15 39 39 H 1.09000 * 109.76313 * 120.57927 * 25 14 13 40 40 H 1.08991 * 109.77124 * 241.32636 * 25 14 13 41 41 H 1.08998 * 110.01652 * 42.28744 * 28 9 7 42 42 H 1.08999 * 110.05523 * 280.92306 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1347 -2.5244 -0.0006 11 6 -0.4709 -4.0238 0.0170 12 1 -0.8320 -4.3866 -0.9455 13 6 -1.4377 -4.3209 1.1804 14 7 -0.6135 -4.4473 2.3880 15 6 -1.0666 -4.3545 3.6540 16 8 -0.2981 -4.4805 4.5838 17 6 -2.5279 -4.0942 3.9142 18 1 -3.1350 -4.6739 3.2189 19 6 -2.8286 -2.5926 3.7419 20 6 -4.2201 -2.3621 4.3825 21 16 -4.3363 -3.7289 5.5964 22 8 -4.2514 -3.2433 6.9292 23 8 -5.3157 -4.6822 5.2074 24 7 -2.8632 -4.4706 5.3057 25 6 0.7790 -4.6968 2.0016 26 6 0.8504 -4.7074 0.4666 27 1 0.9846 -5.7086 0.0573 28 6 1.9380 -3.7218 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5506 -2.0429 0.8843 31 1 -0.5471 -2.0645 -0.8987 32 1 -1.9735 -5.2519 0.9951 33 1 -2.1449 -3.4996 1.2955 34 1 -2.8547 -2.3337 2.6833 35 1 -2.0747 -1.9968 4.2565 36 1 -5.0083 -2.4422 3.6339 37 1 -4.2624 -1.3952 4.8840 38 1 -2.3459 -5.0223 5.9130 39 1 1.4180 -3.9062 2.3949 40 1 1.1028 -5.6614 2.3923 41 1 2.7822 -3.7447 0.6896 42 1 2.2703 -3.9805 -1.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049221255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -57.521488 kcal Electronic energy + Delta-G solvation = -27491.072073 eV Core-core repulsion = 23599.502407 eV Total energy + Delta-G solvation = -3891.569666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.54045 -38.70073 -37.26328 -36.48523 -36.03074 -35.08153 -32.45014 -31.85900 -30.29447 -29.88624 -27.43534 -25.70401 -25.22795 -23.42794 -22.35632 -20.20469 -20.03399 -19.56801 -19.34837 -17.97969 -17.33816 -16.93619 -16.43699 -16.12992 -16.03191 -15.24186 -15.01374 -14.89713 -14.42901 -13.88615 -13.79463 -13.71872 -13.22647 -13.20704 -12.88502 -12.46429 -12.31596 -12.29031 -12.17307 -12.08627 -12.00637 -11.69963 -11.61711 -11.42689 -11.00329 -10.89882 -10.82189 -10.50286 -10.22075 -10.15182 -10.01649 -9.95933 -9.75680 -9.65643 -8.70969 -8.47937 -6.93214 -5.83231 -3.15617 0.03197 2.26822 2.53742 3.02270 3.33342 3.40180 3.41470 3.42082 3.76095 4.07414 4.21315 4.41434 4.45209 4.57853 4.65248 4.78760 4.93656 5.01131 5.15291 5.31327 5.34469 5.40766 5.42571 5.53365 5.60437 5.60909 5.76883 5.94421 6.07056 6.11128 6.22304 6.35302 6.46434 6.55914 6.71931 6.94815 7.41968 7.44673 7.57899 7.69681 8.12295 8.16106 9.12633 9.72700 10.35497 11.28837 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.003879 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.108589 B = 7216.974227 C = 8222.607655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.123 4.123 12 H 0.095 0.905 13 C 0.103 3.897 14 N -0.599 5.599 15 C 0.539 3.461 16 O -0.530 6.530 17 C 0.091 3.909 18 H 0.112 0.888 19 C -0.117 4.117 20 C -0.595 4.595 21 S 2.578 3.422 22 O -0.959 6.959 23 O -0.954 6.954 24 N -1.082 6.082 25 C 0.123 3.877 26 C -0.112 4.112 27 H 0.091 0.909 28 C 0.144 3.856 29 H 0.251 0.749 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.440 0.560 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -9.168 3.182 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.113 0.887 13 C -0.020 4.020 14 N -0.333 5.333 15 C 0.324 3.676 16 O -0.406 6.406 17 C -0.021 4.021 18 H 0.129 0.871 19 C -0.157 4.157 20 C -0.726 4.726 21 S 2.672 3.328 22 O -0.949 6.949 23 O -0.943 6.943 24 N -0.850 5.850 25 C 0.000 4.000 26 C -0.132 4.132 27 H 0.109 0.891 28 C 0.017 3.983 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.834 -9.249 4.430 13.535 hybrid contribution 1.034 1.071 -0.433 1.550 sum -7.800 -8.178 3.997 11.988 Atomic orbital electron populations 1.69941 1.04861 1.24919 1.57401 1.24755 0.95747 0.97646 1.02066 0.86051 0.78830 0.83687 0.77242 1.20490 1.21720 1.21760 1.19096 0.90534 0.82290 1.43586 0.90346 1.44198 1.01462 0.99974 1.87195 1.21057 0.84801 0.86669 1.01433 1.23257 0.93702 1.00690 0.96632 0.88663 1.22215 0.94299 1.00931 0.84580 1.48134 1.10410 1.69769 1.04941 1.19487 0.88872 0.77481 0.81756 1.90713 1.57149 1.50426 1.42349 1.21975 0.97106 0.97042 0.86018 0.87057 1.22450 0.94377 0.93124 1.05768 1.30727 1.05469 1.19171 1.17256 1.06159 0.73719 0.77331 0.75614 1.93613 1.85627 1.81347 1.34282 1.93651 1.58427 1.58052 1.84186 1.55342 1.42318 1.67616 1.19683 1.21834 0.82324 1.01027 0.94773 1.22880 0.97404 0.99241 0.93626 0.89069 1.21245 0.93796 0.85691 0.97560 0.93834 0.93182 0.93676 0.91651 0.90275 0.86212 0.87913 0.83749 0.83549 0.71766 0.90362 0.92141 0.94367 0.96137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.09 10.25 55.49 0.57 -24.52 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -5.96 10.25 -15.06 -0.15 -6.11 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -13.99 3.38 -171.89 -0.58 -14.57 16 10 C 0.19 3.88 4.79 -3.61 -0.02 3.86 16 11 C -0.12 -1.84 4.08 -88.38 -0.36 -2.20 16 12 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 13 C 0.10 1.27 5.51 -3.30 -0.02 1.25 16 14 N -0.60 -8.72 3.31 -172.23 -0.57 -9.29 16 15 C 0.54 8.03 7.10 -10.98 -0.08 7.96 16 16 O -0.53 -9.68 16.59 5.56 0.09 -9.58 16 17 C 0.09 1.02 2.58 -67.68 -0.17 0.84 16 18 H 0.11 0.96 7.70 -51.93 -0.40 0.56 16 19 C -0.12 -1.19 5.99 -25.14 -0.15 -1.34 16 20 C -0.60 -4.58 7.49 38.17 0.29 -4.29 16 21 S 2.58 27.24 6.40 -107.50 -0.69 26.55 16 22 O -0.96 -13.52 18.14 -57.41 -1.04 -14.57 16 23 O -0.95 -12.44 18.14 -57.41 -1.04 -13.48 16 24 N -1.08 -12.20 6.62 -4.53 -0.03 -12.23 16 25 C 0.12 1.90 6.24 -3.61 -0.02 1.88 16 26 C -0.11 -1.64 4.08 -88.47 -0.36 -2.00 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 C 0.14 2.66 6.40 -3.39 -0.02 2.63 16 29 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.05 1.16 6.71 -51.93 -0.35 0.81 16 31 H 0.05 1.07 7.45 -51.93 -0.39 0.69 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.91 5.80 -51.93 -0.30 0.60 16 34 H 0.12 1.15 6.56 -51.93 -0.34 0.81 16 35 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.15 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.44 4.95 8.53 -40.75 -0.35 4.61 16 39 H 0.08 1.46 7.47 -51.93 -0.39 1.08 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.71 7.78 -51.93 -0.40 0.30 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -35.68 342.92 -10.16 -45.83 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.84 Total: 2.21 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.17 Total: 2.23 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.61 Total: -60.62 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.99 Total: -37.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 27.24 SS G_CDS: -0.69 Total: 26.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.68 -10.16 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049221255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.688 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds