Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48499 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47008 * 299.99808 * 3 2 1 6 6 H 1.48502 * 109.47316 * 59.99886 * 3 2 1 7 7 C 1.38808 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00504 * 0.02562 * 7 2 1 10 10 C 1.46659 * 125.32864 * 0.03093 * 9 7 2 11 11 C 1.53672 * 107.97034 * 180.67230 * 10 9 7 12 12 H 1.09005 * 112.77462 * 253.98499 * 11 10 9 13 13 C 1.54157 * 109.50887 * 126.92810 * 11 10 9 14 14 N 1.46756 * 106.58584 * 277.93971 * 13 11 10 15 15 C 1.34780 * 125.33033 * 161.46135 * 14 13 11 16 16 O 1.21278 * 119.99560 * 179.68769 * 15 14 13 17 17 C 1.50702 * 120.00043 * 359.68859 * 15 14 13 18 18 H 1.08997 * 109.75701 * 40.72607 * 17 15 14 19 19 C 1.54108 * 109.76483 * 279.99724 * 17 15 14 20 20 C 1.54913 * 105.89954 * 194.68767 * 19 17 15 21 21 S 1.83180 * 102.71079 * 25.17017 * 20 19 17 22 22 O 1.42102 * 111.27221 * 109.61696 * 21 20 19 23 23 O 1.42096 * 111.27620 * 248.97014 * 21 20 19 24 24 N 1.47995 * 109.75935 * 161.45877 * 17 15 14 25 25 C 1.46656 * 109.33289 * 341.18779 * 14 13 11 26 26 C 1.53675 * 107.96957 * 0.95650 * 25 14 13 27 27 H 1.08994 * 112.77346 * 253.25385 * 26 25 14 28 28 C 1.46754 * 125.33868 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99712 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.77130 * 300.30474 * 10 9 7 31 31 H 1.09000 * 109.76639 * 61.03363 * 10 9 7 32 32 H 1.09003 * 110.16050 * 158.60414 * 13 11 10 33 33 H 1.08998 * 109.96074 * 37.16213 * 13 11 10 34 34 H 1.09004 * 110.16239 * 75.58290 * 19 17 15 35 35 H 1.09002 * 110.17130 * 313.79937 * 19 17 15 36 36 H 1.08998 * 110.76718 * 266.86760 * 20 19 17 37 37 H 1.09001 * 110.92590 * 143.54611 * 20 19 17 38 38 H 0.96992 * 127.77010 * 343.81454 * 24 17 15 39 39 H 1.09000 * 109.76313 * 120.57927 * 25 14 13 40 40 H 1.08991 * 109.77124 * 241.32636 * 25 14 13 41 41 H 1.08998 * 110.01652 * 42.28744 * 28 9 7 42 42 H 1.08999 * 110.05523 * 280.92306 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1347 -2.5244 -0.0006 11 6 -0.4709 -4.0238 0.0170 12 1 -0.8320 -4.3866 -0.9455 13 6 -1.4377 -4.3209 1.1804 14 7 -0.6135 -4.4473 2.3880 15 6 -1.0666 -4.3545 3.6540 16 8 -0.2981 -4.4805 4.5838 17 6 -2.5279 -4.0942 3.9142 18 1 -3.1350 -4.6739 3.2189 19 6 -2.8286 -2.5926 3.7419 20 6 -4.2201 -2.3621 4.3825 21 16 -4.3363 -3.7289 5.5964 22 8 -4.2514 -3.2433 6.9292 23 8 -5.3157 -4.6822 5.2074 24 7 -2.8632 -4.4706 5.3057 25 6 0.7790 -4.6968 2.0016 26 6 0.8504 -4.7074 0.4666 27 1 0.9846 -5.7086 0.0573 28 6 1.9380 -3.7218 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5506 -2.0429 0.8843 31 1 -0.5471 -2.0645 -0.8987 32 1 -1.9735 -5.2519 0.9951 33 1 -2.1449 -3.4996 1.2955 34 1 -2.8547 -2.3337 2.6833 35 1 -2.0747 -1.9968 4.2565 36 1 -5.0083 -2.4422 3.6339 37 1 -4.2624 -1.3952 4.8840 38 1 -2.3459 -5.0223 5.9130 39 1 1.4180 -3.9062 2.3949 40 1 1.1028 -5.6614 2.3923 41 1 2.7822 -3.7447 0.6896 42 1 2.2703 -3.9805 -1.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049221255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -86.929228 kcal Electronic energy + Delta-G solvation = -27492.347288 eV Core-core repulsion = 23599.502407 eV Total energy + Delta-G solvation = -3892.844881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -41.70734 -39.94344 -38.21417 -37.46546 -36.97830 -36.58004 -34.13934 -32.68002 -31.64823 -31.39857 -28.55739 -27.24628 -26.58144 -24.67985 -23.38633 -21.73873 -20.98777 -20.85416 -20.34015 -19.04788 -18.69833 -18.24487 -17.52740 -17.24647 -17.01293 -16.60120 -16.21894 -15.99167 -15.80737 -15.49057 -14.78349 -14.67945 -14.55702 -14.25875 -14.05329 -13.66032 -13.62098 -13.43142 -13.31424 -13.27626 -13.13853 -12.98886 -12.92468 -12.73360 -12.68913 -12.40051 -11.96234 -11.84633 -11.78604 -11.57485 -11.51434 -11.28717 -11.10538 -10.69216 -10.59871 -9.64078 -8.81367 -7.83960 -5.15938 -0.78298 1.34315 1.44906 1.46837 1.48061 1.54994 1.97749 2.49897 2.60799 2.88416 3.31079 3.34067 3.35176 3.44491 3.55680 3.76435 3.79712 3.86250 3.99345 4.06748 4.22208 4.29915 4.38083 4.53054 4.68942 4.70822 4.76884 4.79736 4.85337 4.96660 4.99177 5.05480 5.11181 5.26154 5.44246 5.50794 5.75582 5.85788 6.04002 6.26902 6.46575 6.98993 7.17399 7.84820 8.44514 9.25814 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.003879 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.108589 B = 7216.974227 C = 8222.607655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.056 4.056 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.625 5.625 10 C 0.192 3.808 11 C -0.112 4.112 12 H 0.126 0.874 13 C 0.101 3.899 14 N -0.602 5.602 15 C 0.532 3.468 16 O -0.574 6.574 17 C 0.093 3.907 18 H 0.149 0.851 19 C -0.122 4.122 20 C -0.565 4.565 21 S 2.587 3.413 22 O -1.000 7.000 23 O -0.978 6.978 24 N -1.088 6.088 25 C 0.123 3.877 26 C -0.093 4.093 27 H 0.136 0.864 28 C 0.135 3.865 29 H 0.247 0.753 30 H 0.020 0.980 31 H 0.009 0.991 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.438 0.562 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -10.431 1.834 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.250 4.250 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.068 3.932 11 C -0.131 4.131 12 H 0.144 0.856 13 C -0.021 4.021 14 N -0.334 5.334 15 C 0.319 3.681 16 O -0.454 6.454 17 C -0.019 4.019 18 H 0.166 0.834 19 C -0.162 4.162 20 C -0.698 4.698 21 S 2.685 3.315 22 O -0.990 6.990 23 O -0.968 6.968 24 N -0.855 5.855 25 C 0.000 4.000 26 C -0.113 4.113 27 H 0.154 0.846 28 C 0.010 3.990 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.027 0.973 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.279 0.721 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.238 -10.562 3.076 15.028 hybrid contribution 1.580 1.503 -0.069 2.182 sum -8.658 -9.059 3.007 12.887 Atomic orbital electron populations 1.70117 1.05647 1.24957 1.58303 1.25418 0.96632 1.00187 1.02738 0.85195 0.78181 0.80408 0.76675 1.19749 1.21704 1.22275 1.19375 0.90776 0.84031 1.42810 0.90879 1.44505 1.02868 1.00843 1.86926 1.20859 0.83321 0.90846 0.98207 1.23181 0.94659 0.95914 0.99372 0.85580 1.22440 0.93577 1.03779 0.82268 1.48254 1.10254 1.69222 1.05668 1.20146 0.90199 0.76497 0.81284 1.90688 1.58669 1.52379 1.43654 1.22198 0.94901 0.98219 0.86604 0.83403 1.22488 0.95173 0.92181 1.06393 1.30611 1.04991 1.17833 1.16399 1.05790 0.72873 0.77546 0.75334 1.93561 1.86013 1.81996 1.37442 1.93616 1.59113 1.59628 1.84408 1.55370 1.42371 1.67769 1.19964 1.21732 0.82651 1.00167 0.95448 1.22877 0.95473 1.00172 0.92730 0.84596 1.21450 0.94943 0.84767 0.97880 0.94383 0.96220 0.97261 0.86884 0.89237 0.85060 0.90076 0.80036 0.81772 0.72072 0.94778 0.90591 0.95202 0.95239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.24 10.25 21.65 0.22 -52.02 16 2 C -0.06 -3.04 5.48 84.86 0.47 -2.57 16 3 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.24 -12.92 10.25 84.03 0.86 -12.06 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.63 -29.39 3.38 -697.73 -2.35 -31.74 16 10 C 0.19 8.03 4.79 86.58 0.41 8.45 16 11 C -0.11 -2.99 4.08 -9.34 -0.04 -3.02 16 12 H 0.13 2.69 8.14 -2.38 -0.02 2.67 16 13 C 0.10 2.10 5.51 86.72 0.48 2.58 16 14 N -0.60 -16.30 3.31 -817.20 -2.70 -19.00 16 15 C 0.53 15.30 7.10 87.66 0.62 15.93 16 16 O -0.57 -21.28 16.59 -3.02 -0.05 -21.33 16 17 C 0.09 1.88 2.58 44.33 0.11 1.99 16 18 H 0.15 1.92 7.70 -2.39 -0.02 1.90 16 19 C -0.12 -2.23 5.99 31.62 0.19 -2.04 16 20 C -0.56 -6.90 7.49 72.64 0.54 -6.35 16 21 S 2.59 51.21 6.40 -56.49 -0.36 50.85 16 22 O -1.00 -28.12 18.14 -127.78 -2.32 -30.44 16 23 O -0.98 -23.84 18.14 -127.78 -2.32 -26.16 16 24 N -1.09 -23.57 6.62 -168.24 -1.11 -24.69 16 25 C 0.12 3.66 6.24 86.58 0.54 4.20 16 26 C -0.09 -2.47 4.08 -9.40 -0.04 -2.51 16 27 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 28 C 0.14 4.89 6.40 86.67 0.55 5.45 16 29 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.02 0.93 6.71 -2.39 -0.02 0.91 16 31 H 0.01 0.44 7.45 -2.39 -0.02 0.42 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.72 5.80 -2.39 -0.01 1.70 16 34 H 0.13 2.15 6.56 -2.38 -0.02 2.13 16 35 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.18 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.44 9.92 8.53 -92.76 -0.79 9.13 16 39 H 0.03 1.31 7.47 -2.39 -0.02 1.29 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.03 1.12 7.78 -2.39 -0.02 1.10 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -81.98 342.92 -4.00 -85.98 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.26 Total: 12.04 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.71 Total: 10.04 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -5.95 Total: -127.45 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: -4.69 Total: -77.93 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 51.21 SS G_CDS: -0.36 Total: 50.85 kcal Total: -81.98 -4.00 -85.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049221255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.953 kcal (2) G-P(sol) polarization free energy of solvation -81.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds