Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48492 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46684 * 300.00231 * 3 2 1 6 6 H 1.48506 * 109.46648 * 59.99800 * 3 2 1 7 7 C 1.38816 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46662 * 125.32986 * 0.03085 * 9 7 2 11 11 C 1.53675 * 107.96698 * 180.67562 * 10 9 7 12 12 H 1.09001 * 112.77734 * 253.98826 * 11 10 9 13 13 C 1.53986 * 109.30076 * 126.94221 * 11 10 9 14 14 N 1.46755 * 106.67445 * 277.64392 * 13 11 10 15 15 C 1.34783 * 125.32929 * 161.82145 * 14 13 11 16 16 O 1.21276 * 119.99611 * 179.69303 * 15 14 13 17 17 C 1.50699 * 119.99814 * 359.68872 * 15 14 13 18 18 H 1.08993 * 109.35148 * 318.26393 * 17 15 14 19 19 C 1.54069 * 109.35318 * 77.91095 * 17 15 14 20 20 C 1.55614 * 104.29116 * 165.37749 * 19 17 15 21 21 S 1.83450 * 100.72290 * 322.08061 * 20 19 17 22 22 O 1.42107 * 111.24812 * 270.72524 * 21 20 19 23 23 O 1.42101 * 111.35790 * 131.51298 * 21 20 19 24 24 N 1.47067 * 109.35508 * 198.54734 * 17 15 14 25 25 C 1.46656 * 109.33482 * 341.55188 * 14 13 11 26 26 C 1.53669 * 107.97251 * 0.71087 * 25 14 13 27 27 H 1.08995 * 112.77461 * 253.26003 * 26 25 14 28 28 C 1.46754 * 125.33681 * 180.02562 * 9 7 2 29 29 H 0.97006 * 120.00478 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.77160 * 300.30711 * 10 9 7 31 31 H 1.09000 * 109.76723 * 61.03976 * 10 9 7 32 32 H 1.09000 * 110.01862 * 158.33750 * 13 11 10 33 33 H 1.09002 * 110.00933 * 36.94839 * 13 11 10 34 34 H 1.08994 * 110.46535 * 284.07694 * 19 17 15 35 35 H 1.08995 * 110.46749 * 46.68056 * 19 17 15 36 36 H 1.09000 * 111.16266 * 204.21676 * 20 19 17 37 37 H 1.08992 * 111.16545 * 79.94518 * 20 19 17 38 38 H 0.97001 * 126.30040 * 30.75623 * 24 17 15 39 39 H 1.08998 * 109.76598 * 120.34171 * 25 14 13 40 40 H 1.08999 * 109.76673 * 241.07940 * 25 14 13 41 41 H 1.09002 * 110.01611 * 42.28234 * 28 9 7 42 42 H 1.08994 * 110.05602 * 280.91522 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1347 -2.5244 -0.0006 11 6 -0.4709 -4.0238 0.0170 12 1 -0.8318 -4.3867 -0.9453 13 6 -1.4368 -4.3151 1.1804 14 7 -0.6136 -4.4472 2.3881 15 6 -1.0675 -4.3589 3.6542 16 8 -0.2998 -4.4894 4.5840 17 6 -2.5287 -4.0980 3.9143 18 1 -2.8905 -3.3428 3.2166 19 6 -3.3242 -5.4017 3.7111 20 6 -4.7078 -5.1129 4.3621 21 16 -4.1991 -4.1216 5.8194 22 8 -3.9343 -4.9532 6.9409 23 8 -4.9747 -2.9366 5.9356 24 7 -2.6993 -3.6111 5.2915 25 6 0.7790 -4.6967 2.0018 26 6 0.8505 -4.7074 0.4668 27 1 0.9847 -5.7086 0.0576 28 6 1.9380 -3.7217 0.0016 29 1 -0.4851 0.8401 -0.0004 30 1 -0.5506 -2.0429 0.8842 31 1 -0.5471 -2.0645 -0.8987 32 1 -1.9767 -5.2434 0.9935 33 1 -2.1402 -3.4906 1.2965 34 1 -3.4401 -5.6158 2.6487 35 1 -2.8310 -6.2319 4.2167 36 1 -5.1999 -6.0366 4.6667 37 1 -5.3437 -4.5324 3.6938 38 1 -2.0584 -3.0898 5.7998 39 1 1.4179 -3.9061 2.3951 40 1 1.1028 -5.6613 2.3926 41 1 2.7818 -3.7443 0.6913 42 1 2.2710 -3.9809 -1.0033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049221256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -57.217045 kcal Electronic energy + Delta-G solvation = -27341.548575 eV Core-core repulsion = 23449.992111 eV Total energy + Delta-G solvation = -3891.556464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54032 -38.72099 -37.22178 -36.54469 -36.02596 -35.06002 -32.43736 -31.98474 -30.29159 -29.86973 -27.45000 -25.68663 -25.22222 -23.47110 -22.44695 -20.19166 -19.91632 -19.55665 -19.41696 -17.93947 -17.54330 -16.92448 -16.51274 -16.05711 -15.90463 -15.58028 -14.93836 -14.74743 -14.42478 -13.88612 -13.86087 -13.65524 -13.41064 -13.22768 -12.83792 -12.52686 -12.32027 -12.26698 -12.17216 -12.14465 -12.04080 -11.79997 -11.66440 -11.42014 -10.98305 -10.87453 -10.86963 -10.53162 -10.20969 -10.14384 -10.07532 -9.93486 -9.71858 -9.50661 -8.68149 -8.46180 -6.90556 -5.79838 -3.12692 -0.01381 2.26310 2.58390 3.03680 3.34439 3.36206 3.42472 3.44384 3.62130 3.97239 4.13835 4.35352 4.44372 4.55490 4.67710 4.78595 4.96958 5.00775 5.07780 5.18170 5.29006 5.35828 5.36817 5.44587 5.54408 5.62309 5.65400 5.95361 6.08236 6.11744 6.24158 6.36844 6.47588 6.57369 6.73225 6.92615 7.44757 7.47623 7.60211 7.72892 8.15912 8.19285 9.15462 9.75734 10.38313 11.32154 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.003639 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.858986 B = 7692.610780 C = 8586.581550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.123 4.123 12 H 0.095 0.905 13 C 0.105 3.895 14 N -0.600 5.600 15 C 0.530 3.470 16 O -0.529 6.529 17 C 0.097 3.903 18 H 0.111 0.889 19 C -0.118 4.118 20 C -0.595 4.595 21 S 2.579 3.421 22 O -0.957 6.957 23 O -0.954 6.954 24 N -1.081 6.081 25 C 0.122 3.878 26 C -0.111 4.111 27 H 0.091 0.909 28 C 0.144 3.856 29 H 0.252 0.748 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.440 0.560 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -14.111 2.672 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.113 0.887 13 C -0.018 4.018 14 N -0.333 5.333 15 C 0.315 3.685 16 O -0.405 6.405 17 C -0.015 4.015 18 H 0.129 0.871 19 C -0.158 4.158 20 C -0.726 4.726 21 S 2.673 3.327 22 O -0.946 6.946 23 O -0.944 6.944 24 N -0.849 5.849 25 C 0.000 4.000 26 C -0.131 4.131 27 H 0.109 0.891 28 C 0.017 3.983 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.045 -13.752 4.130 17.524 hybrid contribution 0.884 0.955 -0.611 1.437 sum -9.161 -12.797 3.519 16.127 Atomic orbital electron populations 1.69935 1.04892 1.25009 1.57177 1.24774 0.95734 0.97701 1.02003 0.86048 0.78776 0.83688 0.77265 1.20485 1.21699 1.21734 1.19087 0.90512 0.82290 1.43826 0.90342 1.44195 1.01454 0.99972 1.87217 1.21069 0.84799 0.86691 1.01457 1.23223 0.93746 1.00724 0.96617 0.88682 1.22149 0.94334 1.00692 0.84636 1.48161 1.10324 1.69855 1.04965 1.19788 0.89370 0.77593 0.81713 1.90721 1.57402 1.50055 1.42309 1.21624 0.95615 0.97537 0.86718 0.87138 1.22622 0.90798 0.96672 1.05677 1.30848 1.05395 1.16135 1.20220 1.06115 0.74555 0.76077 0.75945 1.93634 1.83282 1.69665 1.47988 1.93647 1.69711 1.45213 1.85803 1.54957 1.37698 1.70540 1.21701 1.21831 0.82453 1.00993 0.94739 1.22872 0.97408 0.99189 0.93643 0.89090 1.21236 0.93796 0.85719 0.97532 0.93764 0.93209 0.93691 0.91854 0.90221 0.86222 0.88039 0.83629 0.83479 0.71798 0.90444 0.92146 0.94404 0.96180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.94 10.25 55.49 0.57 -25.37 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.14 10.25 -15.06 -0.15 -6.30 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.31 3.38 -171.90 -0.58 -14.89 16 10 C 0.18 3.99 4.78 -3.60 -0.02 3.97 16 11 C -0.12 -1.85 4.09 -88.47 -0.36 -2.21 16 12 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 13 C 0.10 1.28 5.38 -3.39 -0.02 1.26 16 14 N -0.60 -8.69 3.31 -172.34 -0.57 -9.26 16 15 C 0.53 7.92 7.07 -10.98 -0.08 7.84 16 16 O -0.53 -9.83 16.68 5.56 0.09 -9.74 16 17 C 0.10 1.06 2.81 -68.22 -0.19 0.87 16 18 H 0.11 1.06 7.05 -51.93 -0.37 0.70 16 19 C -0.12 -0.83 5.97 -24.78 -0.15 -0.98 16 20 C -0.60 -3.35 7.51 38.55 0.29 -3.06 16 21 S 2.58 26.88 6.49 -107.50 -0.70 26.18 16 22 O -0.96 -13.29 18.14 -57.43 -1.04 -14.33 16 23 O -0.95 -13.11 18.14 -57.43 -1.04 -14.15 16 24 N -1.08 -12.82 6.31 -5.08 -0.03 -12.85 16 25 C 0.12 1.90 6.24 -3.61 -0.02 1.88 16 26 C -0.11 -1.64 4.09 -88.48 -0.36 -2.00 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 C 0.14 2.70 6.40 -3.40 -0.02 2.68 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.22 6.69 -51.93 -0.35 0.87 16 31 H 0.04 1.10 7.45 -51.93 -0.39 0.71 16 32 H 0.06 0.54 7.61 -51.93 -0.40 0.14 16 33 H 0.08 0.95 6.74 -51.93 -0.35 0.60 16 34 H 0.12 0.56 7.30 -51.93 -0.38 0.18 16 35 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.15 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.44 5.50 8.72 -40.34 -0.35 5.15 16 39 H 0.08 1.48 7.47 -51.93 -0.39 1.09 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.71 7.78 -51.93 -0.40 0.31 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -37.58 343.54 -10.20 -47.78 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.87 Total: 1.02 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.18 Total: 3.69 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.61 Total: -62.37 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.99 Total: -38.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 26.88 SS G_CDS: -0.70 Total: 26.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.58 -10.20 -47.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049221256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.437 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds