Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48492 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46684 * 300.00231 * 3 2 1 6 6 H 1.48506 * 109.46648 * 59.99800 * 3 2 1 7 7 C 1.38816 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46662 * 125.32986 * 0.03085 * 9 7 2 11 11 C 1.53675 * 107.96698 * 180.67562 * 10 9 7 12 12 H 1.09001 * 112.77734 * 253.98826 * 11 10 9 13 13 C 1.53986 * 109.30076 * 126.94221 * 11 10 9 14 14 N 1.46755 * 106.67445 * 277.64392 * 13 11 10 15 15 C 1.34783 * 125.32929 * 161.82145 * 14 13 11 16 16 O 1.21276 * 119.99611 * 179.69303 * 15 14 13 17 17 C 1.50699 * 119.99814 * 359.68872 * 15 14 13 18 18 H 1.08993 * 109.35148 * 318.26393 * 17 15 14 19 19 C 1.54069 * 109.35318 * 77.91095 * 17 15 14 20 20 C 1.55614 * 104.29116 * 165.37749 * 19 17 15 21 21 S 1.83450 * 100.72290 * 322.08061 * 20 19 17 22 22 O 1.42107 * 111.24812 * 270.72524 * 21 20 19 23 23 O 1.42101 * 111.35790 * 131.51298 * 21 20 19 24 24 N 1.47067 * 109.35508 * 198.54734 * 17 15 14 25 25 C 1.46656 * 109.33482 * 341.55188 * 14 13 11 26 26 C 1.53669 * 107.97251 * 0.71087 * 25 14 13 27 27 H 1.08995 * 112.77461 * 253.26003 * 26 25 14 28 28 C 1.46754 * 125.33681 * 180.02562 * 9 7 2 29 29 H 0.97006 * 120.00478 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.77160 * 300.30711 * 10 9 7 31 31 H 1.09000 * 109.76723 * 61.03976 * 10 9 7 32 32 H 1.09000 * 110.01862 * 158.33750 * 13 11 10 33 33 H 1.09002 * 110.00933 * 36.94839 * 13 11 10 34 34 H 1.08994 * 110.46535 * 284.07694 * 19 17 15 35 35 H 1.08995 * 110.46749 * 46.68056 * 19 17 15 36 36 H 1.09000 * 111.16266 * 204.21676 * 20 19 17 37 37 H 1.08992 * 111.16545 * 79.94518 * 20 19 17 38 38 H 0.97001 * 126.30040 * 30.75623 * 24 17 15 39 39 H 1.08998 * 109.76598 * 120.34171 * 25 14 13 40 40 H 1.08999 * 109.76673 * 241.07940 * 25 14 13 41 41 H 1.09002 * 110.01611 * 42.28234 * 28 9 7 42 42 H 1.08994 * 110.05602 * 280.91522 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1347 -2.5244 -0.0006 11 6 -0.4709 -4.0238 0.0170 12 1 -0.8318 -4.3867 -0.9453 13 6 -1.4368 -4.3151 1.1804 14 7 -0.6136 -4.4472 2.3881 15 6 -1.0675 -4.3589 3.6542 16 8 -0.2998 -4.4894 4.5840 17 6 -2.5287 -4.0980 3.9143 18 1 -2.8905 -3.3428 3.2166 19 6 -3.3242 -5.4017 3.7111 20 6 -4.7078 -5.1129 4.3621 21 16 -4.1991 -4.1216 5.8194 22 8 -3.9343 -4.9532 6.9409 23 8 -4.9747 -2.9366 5.9356 24 7 -2.6993 -3.6111 5.2915 25 6 0.7790 -4.6967 2.0018 26 6 0.8505 -4.7074 0.4668 27 1 0.9847 -5.7086 0.0576 28 6 1.9380 -3.7217 0.0016 29 1 -0.4851 0.8401 -0.0004 30 1 -0.5506 -2.0429 0.8842 31 1 -0.5471 -2.0645 -0.8987 32 1 -1.9767 -5.2434 0.9935 33 1 -2.1402 -3.4906 1.2965 34 1 -3.4401 -5.6158 2.6487 35 1 -2.8310 -6.2319 4.2167 36 1 -5.1999 -6.0366 4.6667 37 1 -5.3437 -4.5324 3.6938 38 1 -2.0584 -3.0898 5.7998 39 1 1.4179 -3.9061 2.3951 40 1 1.1028 -5.6613 2.3926 41 1 2.7818 -3.7443 0.6913 42 1 2.2710 -3.9809 -1.0033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049221256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -89.447607 kcal Electronic energy + Delta-G solvation = -27342.946197 eV Core-core repulsion = 23449.992111 eV Total energy + Delta-G solvation = -3892.954086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -41.68854 -39.94670 -38.13051 -37.46856 -36.93075 -36.57910 -34.15469 -32.70590 -31.64982 -31.40681 -28.53395 -27.25937 -26.55943 -24.65076 -23.36851 -21.78723 -20.85033 -20.79965 -20.38833 -19.01946 -18.67659 -18.37996 -17.60160 -17.14580 -16.91040 -16.70235 -16.38960 -15.78367 -15.72535 -15.50864 -14.73874 -14.62224 -14.49250 -14.16157 -14.11348 -13.72104 -13.56504 -13.46862 -13.25923 -13.23865 -13.08361 -12.97615 -12.93115 -12.75020 -12.70383 -12.47483 -11.97785 -11.87171 -11.76748 -11.53880 -11.52099 -11.29191 -11.13033 -10.70790 -10.47264 -9.61280 -8.84578 -7.87112 -5.19475 -0.74848 1.35913 1.42173 1.43833 1.52638 1.59886 2.00518 2.47337 2.63497 2.89580 3.29980 3.33588 3.40169 3.46354 3.58595 3.77449 3.84071 3.89925 3.99481 4.21857 4.31769 4.34723 4.40703 4.59871 4.64962 4.70947 4.79148 4.83506 4.86689 4.95453 5.02048 5.05288 5.11122 5.28301 5.44944 5.48125 5.73233 5.83388 5.92803 6.23805 6.50369 7.04571 7.13883 7.82699 8.41600 9.22532 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.003639 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.858986 B = 7692.610780 C = 8586.581550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.060 4.060 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.298 1.298 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.626 5.626 10 C 0.191 3.809 11 C -0.112 4.112 12 H 0.130 0.870 13 C 0.104 3.896 14 N -0.602 5.602 15 C 0.522 3.478 16 O -0.579 6.579 17 C 0.093 3.907 18 H 0.126 0.874 19 C -0.117 4.117 20 C -0.545 4.545 21 S 2.565 3.435 22 O -1.003 7.003 23 O -0.999 6.999 24 N -1.096 6.096 25 C 0.122 3.878 26 C -0.091 4.091 27 H 0.141 0.859 28 C 0.134 3.866 29 H 0.245 0.755 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.183 0.817 37 H 0.182 0.818 38 H 0.431 0.569 39 H 0.026 0.974 40 H 0.079 0.921 41 H 0.028 0.972 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -17.277 0.530 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.225 1.225 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.353 5.353 10 C 0.067 3.933 11 C -0.131 4.131 12 H 0.148 0.852 13 C -0.018 4.018 14 N -0.334 5.334 15 C 0.309 3.691 16 O -0.459 6.459 17 C -0.019 4.019 18 H 0.143 0.857 19 C -0.156 4.156 20 C -0.680 4.680 21 S 2.665 3.335 22 O -0.992 6.992 23 O -0.988 6.988 24 N -0.861 5.861 25 C -0.001 4.001 26 C -0.110 4.110 27 H 0.159 0.841 28 C 0.008 3.992 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.181 0.819 35 H 0.121 0.879 36 H 0.201 0.799 37 H 0.199 0.801 38 H 0.270 0.730 39 H 0.045 0.955 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.809 -16.924 1.993 20.733 hybrid contribution 1.540 1.936 -0.019 2.474 sum -10.269 -14.988 1.974 18.275 Atomic orbital electron populations 1.70138 1.05862 1.24946 1.58412 1.25485 0.96610 1.00483 1.02792 0.85159 0.78258 0.80194 0.76659 1.19386 1.21506 1.22528 1.19405 0.90833 0.84073 1.42677 0.90697 1.44528 1.02878 1.00966 1.86885 1.20865 0.83327 0.91395 0.97759 1.23166 0.94882 0.95342 0.99723 0.85189 1.22408 0.93417 1.03910 0.82042 1.48288 1.10108 1.69271 1.05742 1.20551 0.90863 0.76457 0.81180 1.90694 1.59082 1.52277 1.43802 1.21970 0.93341 1.00247 0.86340 0.85689 1.22850 0.90237 0.94118 1.08430 1.30656 1.05423 1.16291 1.15615 1.06371 0.73751 0.75831 0.77553 1.93571 1.83747 1.70028 1.51859 1.93587 1.70074 1.47887 1.87302 1.55098 1.37980 1.70557 1.22423 1.21731 0.82834 1.00059 0.95498 1.22878 0.95249 1.00232 0.92636 0.84086 1.21474 0.95047 0.84710 0.97944 0.94510 0.97165 0.97412 0.85623 0.89993 0.81920 0.87880 0.79920 0.80055 0.73023 0.95497 0.90282 0.95352 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 10.25 21.65 0.22 -54.85 16 2 C -0.06 -3.39 5.48 84.86 0.47 -2.93 16 3 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 7 C -0.24 -13.30 10.25 84.03 0.86 -12.44 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.63 -30.31 3.38 -697.77 -2.36 -32.66 16 10 C 0.19 8.31 4.78 86.58 0.41 8.72 16 11 C -0.11 -2.96 4.09 -9.40 -0.04 -3.00 16 12 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 13 C 0.10 2.05 5.38 86.66 0.47 2.51 16 14 N -0.60 -16.07 3.31 -817.54 -2.70 -18.78 16 15 C 0.52 15.08 7.07 87.66 0.62 15.69 16 16 O -0.58 -22.10 16.68 -3.02 -0.05 -22.15 16 17 C 0.09 1.82 2.81 44.50 0.12 1.95 16 18 H 0.13 2.07 7.05 -2.39 -0.02 2.05 16 19 C -0.12 -1.03 5.97 31.86 0.19 -0.84 16 20 C -0.54 -3.23 7.51 72.88 0.55 -2.68 16 21 S 2.56 51.85 6.49 -56.49 -0.37 51.48 16 22 O -1.00 -28.40 18.14 -127.76 -2.32 -30.72 16 23 O -1.00 -27.85 18.14 -127.76 -2.32 -30.17 16 24 N -1.10 -26.32 6.31 -169.99 -1.07 -27.39 16 25 C 0.12 3.63 6.24 86.57 0.54 4.17 16 26 C -0.09 -2.36 4.09 -9.41 -0.04 -2.40 16 27 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 28 C 0.13 4.90 6.40 86.66 0.55 5.46 16 29 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 30 H 0.01 0.51 6.69 -2.39 -0.02 0.50 16 31 H 0.01 0.38 7.45 -2.39 -0.02 0.36 16 32 H 0.13 1.09 7.61 -2.39 -0.02 1.07 16 33 H 0.08 1.64 6.74 -2.39 -0.02 1.62 16 34 H 0.16 0.16 7.30 -2.39 -0.02 0.14 16 35 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 36 H 0.18 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.18 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.43 11.75 8.72 -93.01 -0.81 10.94 16 39 H 0.03 1.06 7.47 -2.39 -0.02 1.04 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.03 1.08 7.78 -2.39 -0.02 1.06 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -91.74 343.54 -3.99 -95.73 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.24 Total: 7.30 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 4.71 Total: 14.21 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -5.91 Total: -133.69 kcal Atomic # 8 Polarization: -78.35 SS G_CDS: -4.68 Total: -83.04 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.37 Total: 51.48 kcal Total: -91.74 -3.99 -95.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049221256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.283 kcal (2) G-P(sol) polarization free energy of solvation -91.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds