Wall clock time and date at job start Tue Mar 31 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47465 * 2 1 4 4 N 1.46499 * 109.47489 * 239.99621 * 2 1 3 5 5 C 1.34774 * 120.00238 * 84.99543 * 4 2 1 6 6 O 1.21350 * 119.99904 * 0.02562 * 5 4 2 7 7 C 1.49445 * 120.00392 * 180.02562 * 5 4 2 8 8 N 1.34782 * 120.00354 * 180.02562 * 7 5 4 9 9 O 1.21348 * 119.99828 * 0.02562 * 7 5 4 10 10 C 1.53002 * 109.47027 * 119.99767 * 2 1 3 11 11 H 1.09000 * 110.88950 * 57.57226 * 10 2 1 12 12 C 1.55160 * 111.00107 * 293.65118 * 10 2 1 13 13 C 1.54323 * 102.94127 * 206.42505 * 12 10 2 14 14 N 1.47192 * 107.29513 * 22.28167 * 13 12 10 15 15 C 1.34775 * 125.73680 * 181.03325 * 14 13 12 16 16 O 1.21281 * 119.99856 * 179.86042 * 15 14 13 17 17 C 1.50701 * 119.99726 * 359.86049 * 15 14 13 18 18 S 1.80999 * 109.46834 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00122 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00186 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99992 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99891 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47354 * 89.99361 * 23 21 19 25 25 H 1.48499 * 109.47212 * 209.99398 * 23 21 19 26 26 H 1.48501 * 109.47073 * 329.99477 * 23 21 19 27 27 C 1.47425 * 108.61291 * 0.91225 * 14 13 12 28 28 H 1.08997 * 109.47415 * 300.00409 * 1 2 3 29 29 H 1.09009 * 109.46919 * 60.00097 * 1 2 3 30 30 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99971 * 265.01053 * 4 2 1 32 32 H 0.96996 * 119.99416 * 0.02562 * 8 7 5 33 33 H 0.97000 * 119.99958 * 180.02562 * 8 7 5 34 34 H 1.09004 * 110.71965 * 324.78457 * 12 10 2 35 35 H 1.08991 * 110.72311 * 87.88604 * 12 10 2 36 36 H 1.08999 * 109.88854 * 141.60703 * 13 12 10 37 37 H 1.09001 * 109.88086 * 262.62061 * 13 12 10 38 38 H 1.09002 * 109.47259 * 299.99929 * 17 15 14 39 39 H 1.08992 * 109.47562 * 60.00154 * 17 15 14 40 40 H 0.97000 * 120.00021 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36696 * 217.11260 * 27 14 13 42 42 H 1.08995 * 110.36608 * 94.90096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8588 1.1590 -2.4116 7 6 2.6448 -0.7231 -3.5774 8 7 2.7739 -0.0508 -4.7384 9 8 2.9326 -1.9007 -3.5230 10 6 2.0399 -0.7212 1.2493 11 1 1.6546 -1.7398 1.2945 12 6 1.6774 0.0690 2.5345 13 6 2.7764 -0.3637 3.5277 14 7 3.9188 -0.8449 2.7340 15 6 5.0737 -1.3304 3.2309 16 8 5.9490 -1.7020 2.4781 17 6 5.2775 -1.4114 4.7219 18 16 6.9147 -2.0999 5.0704 19 6 6.8858 -2.0812 6.8321 20 1 6.0154 -1.7120 7.3540 21 6 7.9823 -2.5399 7.5491 22 7 9.0434 -2.9893 6.9130 23 14 7.9513 -2.5207 9.4167 24 1 7.4003 -3.8061 9.9159 25 1 9.3320 -2.3403 9.9328 26 1 7.0971 -1.4003 9.8861 27 6 3.5880 -0.7102 1.3037 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 2.5442 0.8906 -4.7817 33 1 3.0966 -0.5083 -5.5305 34 1 1.7229 1.1428 2.3527 35 1 0.6907 -0.2177 2.8980 36 1 3.0822 0.4874 4.1362 37 1 2.4032 -1.1625 4.1687 38 1 5.2042 -0.4131 5.1534 39 1 4.5126 -2.0532 5.1588 40 1 9.8095 -3.3102 7.4141 41 1 3.9934 -1.5504 0.7398 42 1 3.9747 0.2305 0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050104155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:07 Heat of formation + Delta-G solvation = -110.861035 kcal Electronic energy + Delta-G solvation = -25271.356932 eV Core-core repulsion = 21377.474289 eV Total energy + Delta-G solvation = -3893.882642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08258 -39.96419 -38.84181 -37.69047 -35.78044 -34.09238 -32.45014 -32.41149 -30.34147 -29.70354 -28.17074 -25.78856 -25.49016 -23.59690 -22.76055 -20.97867 -20.62429 -19.36552 -18.95057 -17.74255 -17.68886 -16.75656 -16.61821 -16.43020 -16.08253 -15.54832 -15.22914 -14.80684 -14.51761 -14.40314 -14.25470 -14.09095 -13.84906 -13.61419 -13.12584 -12.85904 -12.63876 -12.53177 -12.35026 -12.13746 -11.92185 -11.80168 -11.52239 -11.29027 -11.06829 -11.02328 -11.01436 -10.76460 -10.33467 -10.09250 -9.82405 -9.68097 -9.42486 -9.06845 -8.53817 -8.23644 -6.50679 -6.21755 -3.92560 1.01183 2.05401 2.81418 2.87798 3.04709 3.22091 3.25384 3.30036 3.40480 3.59615 4.04927 4.16876 4.19232 4.21213 4.33878 4.78338 4.82229 4.86495 5.04133 5.10605 5.13343 5.15762 5.24220 5.42527 5.46052 5.50764 5.60216 5.67983 5.72869 5.73467 5.83011 5.92702 5.93468 6.04827 6.13070 6.37613 6.45997 6.86712 7.36602 7.59121 7.59467 7.64127 8.34982 8.53974 9.23352 10.85690 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.002217 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.178926 B =12627.513472 C =13564.339246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.098 0.902 4 N -0.694 5.694 5 C 0.509 3.491 6 O -0.520 6.520 7 C 0.512 3.488 8 N -0.823 5.823 9 O -0.518 6.518 10 C -0.114 4.114 11 H 0.095 0.905 12 C -0.119 4.119 13 C 0.102 3.898 14 N -0.627 5.627 15 C 0.548 3.452 16 O -0.514 6.514 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.415 0.585 32 H 0.414 0.586 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.078 0.922 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 8.417 -17.718 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.116 0.884 4 N -0.347 5.347 5 C 0.289 3.711 6 O -0.396 6.396 7 C 0.291 3.709 8 N -0.389 5.389 9 O -0.393 6.393 10 C -0.133 4.133 11 H 0.114 0.886 12 C -0.158 4.158 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.388 6.388 17 C -0.296 4.296 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.010 4.010 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.251 0.749 32 H 0.244 0.756 33 H 0.244 0.756 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.636 7.845 -18.581 28.149 hybrid contribution -0.899 0.271 1.730 1.969 sum -20.535 8.116 -16.851 27.776 Atomic orbital electron populations 1.22183 0.94113 1.02752 1.03090 1.21089 0.94657 0.97414 0.82043 0.88421 1.45893 1.64783 1.15197 1.08806 1.20038 0.79269 0.86987 0.84767 1.90774 1.48827 1.15160 1.84844 1.20142 0.78729 0.86883 0.85180 1.43525 1.68000 1.16002 1.11397 1.90854 1.48099 1.15361 1.84937 1.22715 0.95806 1.00855 0.93956 0.88630 1.22654 0.98831 1.00643 0.93643 1.22024 0.86140 0.99609 0.94409 1.48519 1.16078 1.65269 1.06607 1.20047 0.79801 0.75902 0.90585 1.90718 1.41051 1.46791 1.60256 1.23500 1.07534 1.05292 0.93321 1.85422 1.09798 1.81297 1.06953 1.22852 1.04985 1.49408 0.91053 0.90928 1.25000 0.94544 0.94563 0.99520 1.70019 1.04861 1.39355 1.36017 0.86161 0.77595 0.78588 0.83110 1.20261 1.20748 1.19696 1.22137 0.93095 1.02319 0.83442 0.90766 0.91840 0.91970 0.74866 0.75570 0.75600 0.90030 0.89429 0.91051 0.91054 0.89298 0.89288 0.92170 0.90309 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.33 37.16 0.35 -0.56 16 2 C 0.15 1.05 2.09 -67.93 -0.14 0.90 16 3 H 0.10 0.77 7.54 -51.93 -0.39 0.38 16 4 N -0.69 -5.39 4.77 -54.24 -0.26 -5.65 16 5 C 0.51 4.57 7.85 -11.59 -0.09 4.48 16 6 O -0.52 -5.48 16.14 5.50 0.09 -5.39 16 7 C 0.51 4.46 8.16 -11.59 -0.09 4.37 16 8 N -0.82 -4.28 8.87 30.90 0.27 -4.01 16 9 O -0.52 -6.02 17.31 5.50 0.10 -5.93 16 10 C -0.11 -0.83 2.62 -88.47 -0.23 -1.07 16 11 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 12 C -0.12 -0.77 5.59 -24.89 -0.14 -0.91 16 13 C 0.10 1.00 6.50 -2.97 -0.02 0.98 16 14 N -0.63 -8.83 3.33 -170.39 -0.57 -9.39 16 15 C 0.55 10.64 7.87 -10.99 -0.09 10.56 16 16 O -0.51 -12.10 16.12 5.56 0.09 -12.01 16 17 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.11 1.30 6.08 -2.53 -0.02 1.29 16 28 H 0.07 0.32 7.50 -51.93 -0.39 -0.07 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.41 3.09 8.07 -40.82 -0.33 2.76 16 32 H 0.41 1.56 8.30 -40.82 -0.34 1.23 16 33 H 0.41 1.42 8.93 -40.82 -0.36 1.05 16 34 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 35 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 42 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -37.77 373.32 -7.23 -45.00 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.99 Total: 0.54 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.08 Total: 4.25 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.18 Total: -44.59 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.27 Total: -23.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.77 -7.23 -45.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050104155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.864 kcal (2) G-P(sol) polarization free energy of solvation -37.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds