Wall clock time and date at job start Tue Mar 31 2020 07:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47465 * 2 1 4 4 N 1.46499 * 109.47489 * 239.99621 * 2 1 3 5 5 C 1.34774 * 120.00238 * 84.99543 * 4 2 1 6 6 O 1.21350 * 119.99904 * 0.02562 * 5 4 2 7 7 C 1.49445 * 120.00392 * 180.02562 * 5 4 2 8 8 N 1.34782 * 120.00354 * 180.02562 * 7 5 4 9 9 O 1.21348 * 119.99828 * 0.02562 * 7 5 4 10 10 C 1.53002 * 109.47027 * 119.99767 * 2 1 3 11 11 H 1.09000 * 110.88950 * 57.57226 * 10 2 1 12 12 C 1.55160 * 111.00107 * 293.65118 * 10 2 1 13 13 C 1.54323 * 102.94127 * 206.42505 * 12 10 2 14 14 N 1.47192 * 107.29513 * 22.28167 * 13 12 10 15 15 C 1.34775 * 125.73680 * 181.03325 * 14 13 12 16 16 O 1.21281 * 119.99856 * 179.86042 * 15 14 13 17 17 C 1.50701 * 119.99726 * 359.86049 * 15 14 13 18 18 S 1.80999 * 109.46834 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00122 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00186 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99992 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99891 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47354 * 89.99361 * 23 21 19 25 25 H 1.48499 * 109.47212 * 209.99398 * 23 21 19 26 26 H 1.48501 * 109.47073 * 329.99477 * 23 21 19 27 27 C 1.47425 * 108.61291 * 0.91225 * 14 13 12 28 28 H 1.08997 * 109.47415 * 300.00409 * 1 2 3 29 29 H 1.09009 * 109.46919 * 60.00097 * 1 2 3 30 30 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99971 * 265.01053 * 4 2 1 32 32 H 0.96996 * 119.99416 * 0.02562 * 8 7 5 33 33 H 0.97000 * 119.99958 * 180.02562 * 8 7 5 34 34 H 1.09004 * 110.71965 * 324.78457 * 12 10 2 35 35 H 1.08991 * 110.72311 * 87.88604 * 12 10 2 36 36 H 1.08999 * 109.88854 * 141.60703 * 13 12 10 37 37 H 1.09001 * 109.88086 * 262.62061 * 13 12 10 38 38 H 1.09002 * 109.47259 * 299.99929 * 17 15 14 39 39 H 1.08992 * 109.47562 * 60.00154 * 17 15 14 40 40 H 0.97000 * 120.00021 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36696 * 217.11260 * 27 14 13 42 42 H 1.08995 * 110.36608 * 94.90096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8588 1.1590 -2.4116 7 6 2.6448 -0.7231 -3.5774 8 7 2.7739 -0.0508 -4.7384 9 8 2.9326 -1.9007 -3.5230 10 6 2.0399 -0.7212 1.2493 11 1 1.6546 -1.7398 1.2945 12 6 1.6774 0.0690 2.5345 13 6 2.7764 -0.3637 3.5277 14 7 3.9188 -0.8449 2.7340 15 6 5.0737 -1.3304 3.2309 16 8 5.9490 -1.7020 2.4781 17 6 5.2775 -1.4114 4.7219 18 16 6.9147 -2.0999 5.0704 19 6 6.8858 -2.0812 6.8321 20 1 6.0154 -1.7120 7.3540 21 6 7.9823 -2.5399 7.5491 22 7 9.0434 -2.9893 6.9130 23 14 7.9513 -2.5207 9.4167 24 1 7.4003 -3.8061 9.9159 25 1 9.3320 -2.3403 9.9328 26 1 7.0971 -1.4003 9.8861 27 6 3.5880 -0.7102 1.3037 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 2.5442 0.8906 -4.7817 33 1 3.0966 -0.5083 -5.5305 34 1 1.7229 1.1428 2.3527 35 1 0.6907 -0.2177 2.8980 36 1 3.0822 0.4874 4.1362 37 1 2.4032 -1.1625 4.1687 38 1 5.2042 -0.4131 5.1534 39 1 4.5126 -2.0532 5.1588 40 1 9.8095 -3.3102 7.4141 41 1 3.9934 -1.5504 0.7398 42 1 3.9747 0.2305 0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050104155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:06 Heat of formation + Delta-G solvation = -142.300299 kcal Electronic energy + Delta-G solvation = -25272.720241 eV Core-core repulsion = 21377.474289 eV Total energy + Delta-G solvation = -3895.245951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79649 -41.04792 -39.68379 -38.76642 -36.62690 -34.72521 -34.59460 -33.33763 -31.44987 -30.58919 -29.24437 -27.66804 -26.43965 -24.59159 -23.45251 -21.61397 -21.30951 -20.69186 -19.76663 -19.43159 -18.38211 -18.06173 -17.52315 -17.18529 -16.89116 -16.84176 -16.58537 -16.43328 -15.77359 -15.46937 -15.16351 -15.08023 -14.82109 -14.51175 -14.40871 -13.99144 -13.68719 -13.61082 -13.29426 -13.16291 -12.99882 -12.89254 -12.82486 -12.62759 -12.52803 -12.17242 -11.96845 -11.72812 -11.61196 -11.14852 -11.00503 -10.92411 -10.81617 -10.32727 -10.28826 -9.72245 -8.69695 -8.35317 -6.14468 0.31379 1.23067 1.42647 1.43530 1.44961 1.53706 1.55990 2.06891 2.11885 2.26669 2.81886 2.98818 3.21995 3.41638 3.46576 3.59593 3.66520 3.88847 4.18759 4.19535 4.29683 4.32174 4.37892 4.43847 4.49394 4.67004 4.77477 4.82537 4.90111 4.97532 5.05622 5.21734 5.27233 5.36250 5.39416 5.40899 5.53266 5.90007 6.19064 6.25351 6.36463 6.75215 6.99970 7.05560 7.08860 8.74061 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.002217 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.178926 B =12627.513472 C =13564.339246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.090 0.910 4 N -0.691 5.691 5 C 0.509 3.491 6 O -0.538 6.538 7 C 0.510 3.490 8 N -0.802 5.802 9 O -0.554 6.554 10 C -0.097 4.097 11 H 0.107 0.893 12 C -0.107 4.107 13 C 0.087 3.913 14 N -0.617 5.617 15 C 0.543 3.457 16 O -0.570 6.570 17 C -0.117 4.117 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.106 3.894 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.416 0.584 32 H 0.423 0.577 33 H 0.422 0.578 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.058 0.942 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.326 9.626 -16.524 30.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.108 0.892 4 N -0.343 5.343 5 C 0.289 3.711 6 O -0.415 6.415 7 C 0.288 3.712 8 N -0.369 5.369 9 O -0.431 6.431 10 C -0.116 4.116 11 H 0.125 0.875 12 C -0.145 4.145 13 C -0.034 4.034 14 N -0.352 5.352 15 C 0.332 3.668 16 O -0.449 6.449 17 C -0.268 4.268 18 S 0.071 5.929 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.180 1.180 27 C -0.016 4.016 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.253 0.747 32 H 0.255 0.745 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.885 9.104 -17.414 30.164 hybrid contribution -0.002 -0.025 1.234 1.234 sum -22.887 9.078 -16.180 29.462 Atomic orbital electron populations 1.22143 0.92369 1.03423 1.03548 1.21141 0.95813 0.96702 0.81251 0.89173 1.45981 1.64153 1.15285 1.08890 1.20097 0.79110 0.86771 0.85144 1.90763 1.49885 1.15728 1.85161 1.20193 0.78590 0.86510 0.85868 1.43440 1.66278 1.16355 1.10786 1.90842 1.50109 1.16704 1.85486 1.22635 0.92065 1.02015 0.94916 0.87455 1.22710 0.98979 1.01227 0.91556 1.22454 0.85478 1.00249 0.95258 1.48470 1.15339 1.62875 1.08517 1.19833 0.80908 0.76324 0.89770 1.90694 1.43413 1.49726 1.61022 1.23284 1.02962 1.05809 0.94785 1.85638 1.16275 1.82707 1.08232 1.23182 1.05628 1.49476 0.90904 0.89775 1.26173 0.93885 0.93753 1.05496 1.70192 1.05793 1.40477 1.38393 0.84921 0.77936 0.79305 0.75616 1.19217 1.20358 1.18034 1.22327 0.96419 1.01294 0.81592 0.88713 0.92978 0.91186 0.74697 0.74484 0.74408 0.88721 0.86034 0.90312 0.89906 0.87540 0.87331 0.91984 0.92297 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.33 71.98 0.67 -0.58 16 2 C 0.15 1.79 2.09 44.99 0.09 1.88 16 3 H 0.09 1.24 7.54 -2.39 -0.02 1.22 16 4 N -0.69 -10.14 4.77 -443.88 -2.12 -12.26 16 5 C 0.51 8.85 7.85 87.27 0.69 9.54 16 6 O -0.54 -10.88 16.14 -3.25 -0.05 -10.93 16 7 C 0.51 8.77 8.16 87.27 0.71 9.48 16 8 N -0.80 -7.71 8.87 -174.50 -1.55 -9.26 16 9 O -0.55 -13.04 17.31 -3.24 -0.06 -13.09 16 10 C -0.10 -1.16 2.62 -9.40 -0.02 -1.19 16 11 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 12 C -0.11 -0.92 5.59 31.78 0.18 -0.74 16 13 C 0.09 1.44 6.50 86.70 0.56 2.00 16 14 N -0.62 -16.71 3.33 -811.37 -2.70 -19.41 16 15 C 0.54 21.32 7.87 87.66 0.69 22.01 16 16 O -0.57 -28.04 16.12 -3.03 -0.05 -28.09 16 17 C -0.12 -4.79 5.35 71.24 0.38 -4.41 16 18 S -0.16 -8.83 20.57 -56.49 -1.16 -9.99 16 19 C -0.54 -31.24 9.50 67.96 0.65 -30.60 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -56.54 13.22 21.65 0.29 -56.26 16 23 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 C 0.11 2.37 6.08 86.85 0.53 2.90 16 28 H 0.09 0.39 7.50 -2.39 -0.02 0.37 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.42 6.03 8.07 -92.71 -0.75 5.28 16 32 H 0.42 2.74 8.30 -92.71 -0.77 1.97 16 33 H 0.42 2.52 8.93 -92.71 -0.83 1.69 16 34 H 0.09 0.65 8.01 -2.39 -0.02 0.63 16 35 H 0.12 0.37 8.13 -2.39 -0.02 0.35 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 39 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 42 H 0.06 1.44 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -86.31 373.32 -1.05 -87.35 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -1.27 Total: 14.89 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.59 Total: 11.43 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -6.08 Total: -97.18 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.16 Total: -52.12 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -86.31 -1.05 -87.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050104155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.946 kcal (2) G-P(sol) polarization free energy of solvation -86.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds