Wall clock time and date at job start Tue Mar 31 2020 07:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46622 * 2 1 4 4 N 1.46495 * 109.47129 * 239.99887 * 2 1 3 5 5 C 1.34778 * 119.99775 * 85.00212 * 4 2 1 6 6 O 1.21350 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.49451 * 119.99715 * 179.97438 * 5 4 2 8 8 N 1.34778 * 119.99715 * 180.02562 * 7 5 4 9 9 O 1.21350 * 120.00101 * 359.97438 * 7 5 4 10 10 C 1.52999 * 109.47044 * 119.99854 * 2 1 3 11 11 H 1.09005 * 110.91304 * 59.90963 * 10 2 1 12 12 C 1.55273 * 111.09886 * 183.82280 * 10 2 1 13 13 C 1.54331 * 103.00311 * 153.44892 * 12 10 2 14 14 N 1.47017 * 107.27349 * 337.88199 * 13 12 10 15 15 C 1.34777 * 125.64891 * 178.95980 * 14 13 12 16 16 O 1.21277 * 120.00255 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99954 * 359.97438 * 15 14 13 18 18 S 1.80996 * 109.47094 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00087 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99820 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00346 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99658 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47357 * 89.99840 * 23 21 19 25 25 H 1.48509 * 109.47208 * 209.99681 * 23 21 19 26 26 H 1.48501 * 109.47279 * 329.99584 * 23 21 19 27 27 C 1.47426 * 108.70373 * 358.94333 * 14 13 12 28 28 H 1.09002 * 109.47195 * 185.07978 * 1 2 3 29 29 H 1.08995 * 109.47201 * 305.08424 * 1 2 3 30 30 H 1.09001 * 109.47040 * 65.08768 * 1 2 3 31 31 H 0.96993 * 120.00114 * 264.99419 * 4 2 1 32 32 H 0.96994 * 120.00416 * 0.02562 * 8 7 5 33 33 H 0.97006 * 119.99549 * 180.02562 * 8 7 5 34 34 H 1.08994 * 110.62588 * 35.09552 * 12 10 2 35 35 H 1.08998 * 110.75727 * 271.86260 * 12 10 2 36 36 H 1.09004 * 109.87631 * 218.46368 * 13 12 10 37 37 H 1.08999 * 110.00825 * 97.37821 * 13 12 10 38 38 H 1.09002 * 109.47199 * 300.00458 * 17 15 14 39 39 H 1.08999 * 109.46846 * 59.99724 * 17 15 14 40 40 H 0.97008 * 120.00093 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36273 * 142.96329 * 27 14 13 42 42 H 1.08994 * 110.36507 * 265.17830 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8581 1.1591 -2.4117 7 6 2.6458 -0.7226 -3.5772 8 7 2.7751 -0.0501 -4.7380 9 8 2.9353 -1.8998 -3.5224 10 6 2.0400 -0.7212 1.2493 11 1 1.6884 -1.7527 1.2738 12 6 3.5891 -0.6602 1.3367 13 6 3.8561 -0.7732 2.8525 14 7 2.6287 -0.3534 3.5444 15 6 2.4490 -0.3291 4.8800 16 8 1.3898 0.0378 5.3428 17 6 3.5644 -0.7578 5.7983 18 16 3.0193 -0.6129 7.5181 19 6 4.4744 -1.1604 8.3474 20 1 5.3424 -1.4558 7.7767 21 6 4.5047 -1.2129 9.7341 22 7 3.4467 -0.8533 10.4295 23 14 6.0471 -1.7940 10.6132 24 1 6.9294 -0.6311 10.8857 25 1 5.6716 -2.4417 11.8957 26 1 6.7663 -2.7713 9.7571 27 6 1.6272 0.0370 2.5355 28 1 -0.3634 -1.0236 0.0910 29 1 -0.3633 0.5906 0.8409 30 1 -0.3633 0.4329 -0.9321 31 1 2.2491 -1.6317 -1.1525 32 1 2.5448 0.8911 -4.7815 33 1 3.0984 -0.5075 -5.5300 34 1 3.9584 0.2896 0.9499 35 1 4.0394 -1.4967 0.8024 36 1 4.6820 -0.1195 3.1331 37 1 4.0945 -1.8043 3.1133 38 1 3.8311 -1.7934 5.5872 39 1 4.4330 -0.1191 5.6377 40 1 3.4679 -0.8897 11.3987 41 1 0.6302 -0.2688 2.8527 42 1 1.6576 1.1135 2.3676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050104157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:20 Heat of formation + Delta-G solvation = -111.010256 kcal Electronic energy + Delta-G solvation = -25113.094457 eV Core-core repulsion = 21219.205344 eV Total energy + Delta-G solvation = -3893.889113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.22 seconds Orbital eigenvalues (eV) -41.15019 -39.99813 -38.91942 -37.70317 -35.81714 -34.18389 -32.43906 -32.35444 -30.72752 -29.57717 -27.82727 -26.01571 -25.49045 -23.88264 -22.43650 -21.00857 -20.73233 -19.36518 -19.08501 -17.79362 -17.72708 -16.84563 -16.64921 -16.47984 -16.18408 -15.53817 -15.07517 -14.80874 -14.58864 -14.41257 -14.23420 -14.16177 -13.85226 -13.52793 -13.18278 -12.98799 -12.61649 -12.58658 -12.49985 -12.21906 -11.84879 -11.75023 -11.44052 -11.23488 -11.07001 -11.02953 -11.01357 -10.76966 -10.44270 -10.17735 -9.82855 -9.73848 -9.43552 -9.07210 -8.54931 -8.24443 -6.51144 -6.22218 -3.93000 0.92180 1.96534 2.72267 2.87741 3.03386 3.21943 3.25155 3.29762 3.34328 3.59137 4.02024 4.12739 4.15922 4.20082 4.37352 4.78981 4.83144 4.88388 5.04679 5.11341 5.12973 5.15764 5.28509 5.43733 5.49732 5.50954 5.60623 5.67704 5.72005 5.76910 5.83038 5.91290 5.92262 5.96490 6.12881 6.35344 6.38783 6.79765 7.28705 7.50627 7.58772 7.62815 8.34593 8.52453 9.23024 10.85199 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.002002 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.383308 B =13982.096804 C =14640.537569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 H 0.098 0.902 4 N -0.691 5.691 5 C 0.507 3.493 6 O -0.518 6.518 7 C 0.513 3.487 8 N -0.823 5.823 9 O -0.521 6.521 10 C -0.113 4.113 11 H 0.095 0.905 12 C -0.126 4.126 13 C 0.102 3.898 14 N -0.627 5.627 15 C 0.549 3.451 16 O -0.515 6.515 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.119 3.881 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.413 0.587 32 H 0.415 0.585 33 H 0.411 0.589 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.083 0.917 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 0.746 -30.414 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.116 0.884 4 N -0.344 5.344 5 C 0.287 3.713 6 O -0.394 6.394 7 C 0.292 3.708 8 N -0.389 5.389 9 O -0.396 6.396 10 C -0.133 4.133 11 H 0.114 0.886 12 C -0.164 4.164 13 C -0.022 4.022 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.004 4.004 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.245 0.755 33 H 0.244 0.756 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.665 1.410 -29.235 29.390 hybrid contribution 2.451 -1.007 -0.390 2.679 sum -0.213 0.403 -29.625 29.628 Atomic orbital electron populations 1.22232 0.94100 1.02963 1.03236 1.21058 0.94756 0.97331 0.82011 0.88371 1.45846 1.64756 1.15033 1.08765 1.20030 0.79491 0.87030 0.84727 1.90793 1.48653 1.15201 1.84733 1.20165 0.78621 0.86820 0.85207 1.43541 1.67842 1.16084 1.11410 1.90838 1.48374 1.15386 1.85035 1.22713 0.96264 1.00877 0.93434 0.88650 1.22730 0.94893 1.03359 0.95390 1.21994 0.87989 1.00705 0.91483 1.48479 1.14953 1.68032 1.04980 1.20031 0.89114 0.76953 0.80119 1.90712 1.27637 1.46063 1.74449 1.23508 0.99540 1.03980 1.02693 1.85398 1.21346 1.86939 0.89727 1.22855 1.00235 1.51299 0.93944 0.90930 1.24993 0.97240 0.94948 0.96415 1.70018 1.28352 1.44790 1.07082 0.86165 0.81676 0.78847 0.78788 1.20265 1.20740 1.19696 1.22046 0.93741 0.98694 0.85954 0.91870 0.90549 0.91847 0.75042 0.75492 0.75618 0.90311 0.89793 0.91133 0.91100 0.89282 0.89293 0.92173 0.89892 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 9.23 37.16 0.34 -0.79 16 2 C 0.15 1.04 2.08 -67.93 -0.14 0.90 16 3 H 0.10 0.78 7.57 -51.93 -0.39 0.38 16 4 N -0.69 -4.49 4.83 -54.23 -0.26 -4.75 16 5 C 0.51 3.93 7.85 -11.58 -0.09 3.83 16 6 O -0.52 -5.07 16.14 5.50 0.09 -4.98 16 7 C 0.51 3.66 8.16 -11.58 -0.09 3.56 16 8 N -0.82 -3.16 8.87 30.91 0.27 -2.89 16 9 O -0.52 -5.06 17.31 5.50 0.10 -4.96 16 10 C -0.11 -0.83 2.64 -88.41 -0.23 -1.06 16 11 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 12 C -0.13 -0.90 6.20 -24.83 -0.15 -1.05 16 13 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 14 N -0.63 -8.66 3.33 -170.52 -0.57 -9.23 16 15 C 0.55 10.47 7.87 -10.98 -0.09 10.39 16 16 O -0.51 -11.82 16.12 5.56 0.09 -11.73 16 17 C -0.15 -3.00 5.35 36.01 0.19 -2.80 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.12 1.29 5.52 -2.53 -0.01 1.28 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.52 7.60 -51.93 -0.39 0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.41 2.31 8.07 -40.82 -0.33 1.98 16 32 H 0.41 1.10 8.30 -40.82 -0.34 0.76 16 33 H 0.41 0.84 8.93 -40.82 -0.36 0.47 16 34 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 42 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -37.15 373.47 -7.25 -44.40 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.00 Total: -0.89 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.10 Total: 2.32 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.18 Total: -42.27 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.27 Total: -21.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.15 -7.25 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050104157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.607 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.22 seconds