Wall clock time and date at job start Tue Mar 31 2020 07:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47061 * 2 1 4 4 N 1.46502 * 109.46866 * 119.99669 * 2 1 3 5 5 C 1.34776 * 120.00297 * 274.99823 * 4 2 1 6 6 O 1.21347 * 119.99677 * 0.02562 * 5 4 2 7 7 C 1.49444 * 120.00322 * 179.97438 * 5 4 2 8 8 N 1.34771 * 120.00278 * 180.02562 * 7 5 4 9 9 O 1.21349 * 119.99766 * 0.02562 * 7 5 4 10 10 C 1.52999 * 109.47521 * 239.99476 * 2 1 3 11 11 H 1.08999 * 110.88622 * 299.21173 * 10 2 1 12 12 C 1.55152 * 111.04040 * 175.30180 * 10 2 1 13 13 C 1.54328 * 102.94275 * 206.41168 * 12 10 2 14 14 N 1.47185 * 107.29219 * 22.28589 * 13 12 10 15 15 C 1.34775 * 125.73400 * 181.03314 * 14 13 12 16 16 O 1.21282 * 120.00091 * 179.86236 * 15 14 13 17 17 C 1.50706 * 119.99896 * 359.85175 * 15 14 13 18 18 S 1.80998 * 109.46843 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99952 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99764 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00199 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00068 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00028 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47130 * 89.99851 * 23 21 19 25 25 H 1.48496 * 109.47382 * 210.00072 * 23 21 19 26 26 H 1.48507 * 109.46917 * 329.99662 * 23 21 19 27 27 C 1.47420 * 108.61734 * 0.90977 * 14 13 12 28 28 H 1.09003 * 109.47197 * 174.77133 * 1 2 3 29 29 H 1.09005 * 109.47496 * 294.77771 * 1 2 3 30 30 H 1.08999 * 109.46849 * 54.77786 * 1 2 3 31 31 H 0.97001 * 119.99883 * 95.00478 * 4 2 1 32 32 H 0.97002 * 120.00158 * 359.97438 * 8 7 5 33 33 H 0.97004 * 120.00258 * 180.02562 * 8 7 5 34 34 H 1.09000 * 110.71873 * 324.77075 * 12 10 2 35 35 H 1.08994 * 110.71988 * 87.86890 * 12 10 2 36 36 H 1.09003 * 109.88085 * 141.60684 * 13 12 10 37 37 H 1.08998 * 109.88036 * 262.61888 * 13 12 10 38 38 H 1.08998 * 109.47416 * 300.00070 * 17 15 14 39 39 H 1.08997 * 109.46860 * 60.00941 * 17 15 14 40 40 H 0.97008 * 119.99988 * 179.97438 * 22 21 19 41 41 H 1.09007 * 110.36504 * 217.11788 * 27 14 13 42 42 H 1.09000 * 110.36841 * 94.90424 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8580 1.1591 2.4117 7 6 2.6445 -0.7228 3.5776 8 7 2.7728 -0.0505 4.7386 9 8 2.9331 -1.9002 3.5232 10 6 2.0401 -0.7213 -1.2491 11 1 1.7010 -1.7571 -1.2654 12 6 3.5864 -0.6406 -1.3465 13 6 3.8440 -0.7618 -2.8633 14 7 2.6064 -0.3591 -3.5508 15 6 2.4158 -0.3455 -4.8850 16 8 1.3482 0.0046 -5.3415 17 6 3.5295 -0.7652 -5.8095 18 16 2.9688 -0.6383 -7.5258 19 6 4.4239 -1.1731 -8.3634 20 1 5.3000 -1.4541 -7.7978 21 6 4.4437 -1.2344 -9.7498 22 7 5.5305 -1.6344 -10.3755 23 14 2.9281 -0.7491 -10.7280 24 1 2.9833 0.7019 -11.0390 25 1 2.8859 -1.5253 -11.9932 26 1 1.7100 -1.0382 -9.9292 27 6 1.6080 0.0246 -2.5363 28 1 -0.3634 -1.0234 -0.0937 29 1 -0.3634 0.4307 0.9331 30 1 -0.3633 0.5927 -0.8395 31 1 2.2490 -1.6317 1.1527 32 1 2.5425 0.8908 4.7821 33 1 3.0961 -0.5078 5.5307 34 1 3.9471 0.3163 -0.9694 35 1 4.0504 -1.4660 -0.8067 36 1 4.6600 -0.1005 -3.1547 37 1 4.0939 -1.7923 -3.1157 38 1 4.3908 -0.1141 -5.6600 39 1 3.8113 -1.7959 -5.5943 40 1 5.5443 -1.6776 -11.3445 41 1 0.6123 -0.2953 -2.8440 42 1 1.6263 1.1023 -2.3745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050104160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:39 Heat of formation + Delta-G solvation = -110.678652 kcal Electronic energy + Delta-G solvation = -25154.764062 eV Core-core repulsion = 21260.889328 eV Total energy + Delta-G solvation = -3893.874734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.17449 -40.06886 -38.95561 -37.78600 -35.86488 -34.20164 -32.46006 -32.40180 -30.79450 -29.69091 -27.89608 -26.04507 -25.61882 -23.96960 -22.48191 -21.04310 -20.76248 -19.46398 -19.10706 -17.81562 -17.74470 -16.87435 -16.74537 -16.52750 -16.20990 -15.59512 -15.18901 -14.92544 -14.59510 -14.44947 -14.30645 -14.21745 -13.81075 -13.56660 -13.19346 -13.06750 -12.83304 -12.63418 -12.62900 -12.24131 -11.97754 -11.79415 -11.48897 -11.30848 -11.23902 -11.06471 -11.01117 -10.62286 -10.45479 -10.19560 -9.87339 -9.76567 -9.55711 -9.01106 -8.64058 -8.51189 -6.93321 -6.29642 -4.01670 0.90461 1.94334 2.65527 2.70982 2.90724 3.16344 3.32153 3.32986 3.50016 3.58164 3.98974 4.08027 4.12418 4.31689 4.33223 4.66345 4.76054 4.82665 4.84776 5.05302 5.09414 5.10033 5.18387 5.24795 5.40133 5.46379 5.53347 5.59744 5.64071 5.72844 5.77818 5.82825 5.88349 5.94167 6.00038 6.26985 6.35716 6.77579 7.26842 7.48833 7.52055 7.93318 8.39145 8.40821 9.16465 10.79488 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034872 B = 0.002035 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.742086 B =13758.904253 C =14294.750545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 H 0.098 0.902 4 N -0.691 5.691 5 C 0.508 3.492 6 O -0.518 6.518 7 C 0.513 3.487 8 N -0.823 5.823 9 O -0.521 6.521 10 C -0.113 4.113 11 H 0.096 0.904 12 C -0.126 4.126 13 C 0.100 3.900 14 N -0.625 5.625 15 C 0.548 3.452 16 O -0.517 6.517 17 C -0.118 4.118 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.119 3.881 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.413 0.587 32 H 0.415 0.585 33 H 0.411 0.589 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.083 0.917 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 2.533 30.809 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.116 0.884 4 N -0.344 5.344 5 C 0.287 3.713 6 O -0.394 6.394 7 C 0.292 3.708 8 N -0.389 5.389 9 O -0.396 6.396 10 C -0.133 4.133 11 H 0.114 0.886 12 C -0.164 4.164 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.337 3.663 16 O -0.391 6.391 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.004 4.004 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.245 0.755 33 H 0.244 0.756 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.260 3.109 29.649 30.683 hybrid contribution 1.101 -0.484 0.326 1.246 sum -6.159 2.625 29.976 30.714 Atomic orbital electron populations 1.22234 0.94121 1.02960 1.03234 1.21054 0.94741 0.97336 0.82026 0.88362 1.45846 1.64791 1.15039 1.08759 1.20031 0.79465 0.87026 0.84731 1.90792 1.48629 1.15207 1.84745 1.20153 0.78632 0.86829 0.85206 1.43541 1.67840 1.16095 1.11392 1.90840 1.48359 1.15362 1.85048 1.22693 0.96272 1.00927 0.93395 0.88613 1.22711 0.94896 1.03475 0.95303 1.22053 0.87622 1.01009 0.91619 1.48468 1.14619 1.68262 1.04914 1.19988 0.89125 0.76931 0.80299 1.90710 1.27047 1.46586 1.74794 1.23254 0.99533 1.04814 0.99206 1.84790 1.22929 1.88505 0.95387 1.22303 0.98467 1.51520 0.94569 0.89380 1.24712 0.96371 0.93491 0.96739 1.69938 1.27275 1.45073 1.09350 0.86733 0.84603 0.79700 0.80809 1.19195 1.19929 1.15921 1.22058 0.93652 0.98883 0.85818 0.91863 0.91823 0.90591 0.75023 0.75493 0.75600 0.90259 0.89696 0.90949 0.90910 0.88564 0.88517 0.91933 0.89884 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.21 37.16 0.34 -0.74 16 2 C 0.15 0.99 2.08 -67.93 -0.14 0.85 16 3 H 0.10 0.74 7.57 -51.93 -0.39 0.35 16 4 N -0.69 -4.31 4.85 -54.24 -0.26 -4.57 16 5 C 0.51 3.82 7.85 -11.59 -0.09 3.73 16 6 O -0.52 -4.95 16.14 5.50 0.09 -4.86 16 7 C 0.51 3.58 8.16 -11.59 -0.09 3.48 16 8 N -0.82 -3.06 8.87 30.90 0.27 -2.78 16 9 O -0.52 -4.99 17.31 5.50 0.10 -4.89 16 10 C -0.11 -0.78 2.64 -88.47 -0.23 -1.01 16 11 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 12 C -0.13 -0.85 6.21 -24.90 -0.15 -1.00 16 13 C 0.10 0.96 6.50 -2.97 -0.02 0.94 16 14 N -0.63 -8.18 3.33 -170.38 -0.57 -8.74 16 15 C 0.55 9.90 7.87 -10.98 -0.09 9.81 16 16 O -0.52 -11.23 16.12 5.56 0.09 -11.14 16 17 C -0.12 -2.30 5.35 36.01 0.19 -2.10 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 19 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 23 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 27 C 0.12 1.22 5.47 -2.53 -0.01 1.20 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.48 7.58 -51.93 -0.39 0.09 16 31 H 0.41 2.21 8.07 -40.82 -0.33 1.88 16 32 H 0.41 1.04 8.30 -40.82 -0.34 0.70 16 33 H 0.41 0.79 8.93 -40.82 -0.36 0.43 16 34 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.08 0.92 8.04 -51.92 -0.42 0.50 16 42 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -36.76 370.76 -6.74 -43.51 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.03 Total: -1.02 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.08 Total: 3.19 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.22 Total: -41.81 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.27 Total: -20.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.76 -6.74 -43.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050104160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.171 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds