Wall clock time and date at job start Tue Mar 31 2020 07:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.34773 * 119.99969 * 84.72073 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 S 1.80989 * 109.47203 * 180.02562 * 7 5 4 9 9 C 1.76206 * 100.00010 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99621 * 359.97438 * 9 8 7 11 11 C 1.38794 * 119.99924 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00193 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99992 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46975 * 89.99621 * 13 11 9 15 15 H 1.48497 * 109.47172 * 209.99845 * 13 11 9 16 16 H 1.48497 * 109.46742 * 329.99999 * 13 11 9 17 17 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 18 18 H 1.09001 * 110.88778 * 60.70258 * 17 2 1 19 19 C 1.55160 * 111.00302 * 296.81933 * 17 2 1 20 20 C 1.54371 * 102.92001 * 206.45424 * 19 17 2 21 21 N 1.47025 * 107.28897 * 22.13967 * 20 19 17 22 22 C 1.34771 * 125.64803 * 181.06173 * 21 20 19 23 23 O 1.21356 * 120.00270 * 180.02562 * 22 21 20 24 24 C 1.49450 * 120.00316 * 0.03655 * 22 21 20 25 25 N 1.34779 * 120.00272 * 180.02562 * 24 22 21 26 26 O 1.21351 * 119.99724 * 359.97438 * 24 22 21 27 27 C 1.47422 * 108.70478 * 1.08911 * 21 20 19 28 28 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 30 30 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 31 31 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 32 32 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 33 33 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 34 34 H 0.97004 * 119.99966 * 180.02562 * 12 11 9 35 35 H 1.09003 * 110.71766 * 324.78442 * 19 17 2 36 36 H 1.08997 * 110.71660 * 88.05959 * 19 17 2 37 37 H 1.09003 * 109.84446 * 262.73234 * 20 19 17 38 38 H 1.08993 * 110.03052 * 141.64907 * 20 19 17 39 39 H 0.96996 * 120.00053 * 0.02562 * 25 24 22 40 40 H 0.97003 * 119.99680 * 180.02562 * 25 24 22 41 41 H 1.08996 * 110.37430 * 217.03712 * 27 21 20 42 42 H 1.09002 * 110.45814 * 94.75831 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1417 -0.0195 -2.3585 6 8 1.8489 1.1561 -2.4141 7 6 2.6435 -0.7300 -3.5892 8 16 2.6974 0.4313 -4.9764 9 6 3.3004 -0.6339 -6.2439 10 1 3.5137 -1.6693 -6.0229 11 6 3.5022 -0.1420 -7.5260 12 7 3.2427 1.1200 -7.7952 13 14 4.1422 -1.2712 -8.8696 14 1 2.9970 -1.9129 -9.5639 15 1 4.9328 -0.4798 -9.8462 16 1 5.0053 -2.3183 -8.2666 17 6 2.0400 -0.7213 1.2492 18 1 1.6997 -1.7567 1.2662 19 6 1.6092 0.0270 2.5383 20 6 2.7019 -0.3746 3.5520 21 7 3.8820 -0.7912 2.7804 22 6 5.0438 -1.2346 3.2999 23 8 5.9554 -1.5522 2.5644 24 6 5.2096 -1.3355 4.7817 25 7 6.3716 -1.7784 5.3013 26 8 4.2982 -1.0176 5.5172 27 6 3.5842 -0.6428 1.3442 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.6446 -1.1183 -3.4017 33 1 1.9733 -1.5548 -3.8312 34 1 3.3834 1.4637 -8.6913 35 1 1.6106 1.1051 2.3771 36 1 0.6288 -0.3129 2.8721 37 1 2.3498 -1.2029 4.1669 38 1 2.9544 0.4758 4.1853 39 1 7.1005 -2.0315 4.7135 40 1 6.4790 -1.8442 6.2631 41 1 4.0408 -1.4533 0.7762 42 1 3.9382 0.3214 0.9793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051469844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:45 Heat of formation + Delta-G solvation = -109.176050 kcal Electronic energy + Delta-G solvation = -25309.087026 eV Core-core repulsion = 21415.277450 eV Total energy + Delta-G solvation = -3893.809576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 6.32 seconds Orbital eigenvalues (eV) -41.15196 -39.77145 -38.84775 -37.99293 -35.44285 -34.11430 -32.43147 -32.35784 -30.41742 -29.37914 -28.44391 -25.94910 -25.48094 -23.21043 -22.95046 -20.70224 -20.33486 -20.19036 -18.46514 -17.82880 -17.56541 -16.90738 -16.73096 -16.35442 -16.05033 -15.31772 -14.94770 -14.93929 -14.79836 -14.47016 -14.09638 -13.97741 -13.68815 -13.36539 -13.23301 -12.98388 -12.78307 -12.59750 -12.33134 -12.06100 -11.96303 -11.63142 -11.40009 -11.27574 -11.05964 -11.02101 -10.93104 -10.74709 -10.36758 -10.03113 -9.81053 -9.39679 -9.15860 -9.06829 -8.94321 -8.23476 -6.49497 -6.21299 -3.91724 1.01252 1.97056 2.79670 2.99551 3.08179 3.22696 3.23081 3.28407 3.32323 3.66575 4.00008 4.11948 4.20561 4.21061 4.39976 4.83047 4.90274 4.93020 5.13943 5.15139 5.18845 5.28062 5.32463 5.45118 5.49693 5.53314 5.56300 5.64854 5.68553 5.79779 5.89232 5.98995 6.02743 6.14462 6.17437 6.47894 6.62140 6.85359 7.28208 7.58194 7.60107 7.68364 8.35722 8.60035 9.24192 10.86095 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002299 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.378685 B =12177.437202 C =13366.876380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.092 0.908 4 N -0.737 5.737 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.109 4.109 18 H 0.093 0.907 19 C -0.126 4.126 20 C 0.106 3.894 21 N -0.588 5.588 22 C 0.516 3.484 23 O -0.519 6.519 24 C 0.517 3.483 25 N -0.823 5.823 26 O -0.518 6.518 27 C 0.109 3.891 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.086 0.914 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -7.097 27.494 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.110 0.890 4 N -0.391 5.391 5 C 0.321 3.679 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.128 4.128 18 H 0.111 0.889 19 C -0.164 4.164 20 C -0.016 4.016 21 N -0.323 5.323 22 C 0.298 3.702 23 O -0.395 6.395 24 C 0.295 3.705 25 N -0.389 5.389 26 O -0.393 6.393 27 C -0.013 4.013 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.244 0.756 41 H 0.105 0.895 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.864 -4.917 27.223 27.677 hybrid contribution 1.294 -2.740 -0.624 3.094 sum 0.431 -7.657 26.599 27.683 Atomic orbital electron populations 1.22185 0.94838 1.02215 1.02913 1.20795 0.94330 0.97327 0.82520 0.88986 1.46107 1.69573 1.13996 1.09433 1.20296 0.76729 0.87195 0.83708 1.90701 1.48110 1.15797 1.84401 1.23540 1.03706 1.04858 0.98387 1.85381 1.86313 1.13045 0.98629 1.22865 1.50923 0.98246 0.96282 0.90940 1.24992 0.95112 0.95533 0.97972 1.70017 1.45603 1.13264 1.21418 0.86171 0.78835 0.79967 0.80546 1.20281 1.20756 1.19694 1.22694 0.94121 1.01127 0.94897 0.88853 1.22784 0.98658 1.01555 0.93444 1.22255 0.84209 1.01164 0.93985 1.48269 1.13197 1.62063 1.08733 1.19723 0.82302 0.79359 0.88773 1.90812 1.39288 1.48281 1.61120 1.20035 0.83324 0.77963 0.89144 1.43520 1.16020 1.67186 1.12173 1.90808 1.39933 1.47255 1.61340 1.22463 0.95187 1.03468 0.80149 0.92473 0.91657 0.91399 0.76880 0.89216 0.89251 0.92195 0.89686 0.89112 0.90190 0.90162 0.75480 0.75632 0.89530 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.30 37.16 0.35 -1.19 16 2 C 0.16 1.56 2.08 -67.93 -0.14 1.42 16 3 H 0.09 1.11 7.57 -51.93 -0.39 0.71 16 4 N -0.74 -8.90 4.85 -53.80 -0.26 -9.16 16 5 C 0.53 9.45 7.81 -10.98 -0.09 9.37 16 6 O -0.52 -11.17 15.53 5.56 0.09 -11.08 16 7 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 13 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.11 -0.80 2.64 -88.47 -0.23 -1.03 16 18 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 19 C -0.13 -0.75 5.44 -24.87 -0.14 -0.89 16 20 C 0.11 0.79 5.49 -3.04 -0.02 0.77 16 21 N -0.59 -5.53 3.33 -171.00 -0.57 -6.10 16 22 C 0.52 5.41 7.91 -11.59 -0.09 5.32 16 23 O -0.52 -6.66 16.73 5.49 0.09 -6.57 16 24 C 0.52 4.54 8.13 -11.58 -0.09 4.45 16 25 N -0.82 -4.34 8.87 30.91 0.27 -4.06 16 26 O -0.52 -5.45 14.96 5.50 0.08 -5.37 16 27 C 0.11 1.01 6.16 -2.53 -0.02 1.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.40 3.77 8.60 -40.82 -0.35 3.42 16 32 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.08 0.50 8.04 -51.93 -0.42 0.09 16 36 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.08 0.59 7.58 -51.93 -0.39 0.20 16 38 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 39 H 0.41 1.78 8.30 -40.82 -0.34 1.44 16 40 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16 41 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 42 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -36.96 370.15 -7.22 -44.18 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.95 Total: 1.94 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.05 Total: 3.48 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.18 Total: -44.74 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.26 Total: -23.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.96 -7.22 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051469844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.996 kcal (2) G-P(sol) polarization free energy of solvation -36.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.32 seconds