Wall clock time and date at job start Tue Mar 31 2020 07:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47595 * 2 1 4 4 N 1.46504 * 109.46864 * 240.00192 * 2 1 3 5 5 C 1.34777 * 119.99999 * 85.00270 * 4 2 1 6 6 O 1.21279 * 120.00146 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00208 * 180.02562 * 5 4 2 8 8 S 1.80998 * 109.47280 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00101 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99889 * 0.02562 * 9 8 7 11 11 C 1.38799 * 120.00138 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99799 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99927 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47377 * 59.99514 * 13 11 9 15 15 H 1.48499 * 109.46984 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46975 * 299.99351 * 13 11 9 17 17 C 1.52997 * 109.47321 * 120.00454 * 2 1 3 18 18 H 1.08998 * 110.91673 * 58.12329 * 17 2 1 19 19 C 1.55161 * 111.00653 * 182.02269 * 17 2 1 20 20 C 1.54322 * 103.10193 * 153.66076 * 19 17 2 21 21 N 1.47016 * 107.27342 * 337.72517 * 20 19 17 22 22 C 1.34784 * 125.64824 * 178.97727 * 21 20 19 23 23 O 1.21351 * 119.99397 * 179.97438 * 22 21 20 24 24 C 1.49445 * 119.99880 * 359.96941 * 22 21 20 25 25 N 1.34772 * 119.99858 * 180.02562 * 24 22 21 26 26 O 1.21348 * 120.00087 * 0.02562 * 24 22 21 27 27 C 1.47428 * 108.70352 * 358.93531 * 21 20 19 28 28 H 1.09002 * 109.47357 * 184.96518 * 1 2 3 29 29 H 1.09002 * 109.47101 * 304.96290 * 1 2 3 30 30 H 1.09000 * 109.47144 * 64.96474 * 1 2 3 31 31 H 0.96996 * 120.00115 * 265.00015 * 4 2 1 32 32 H 1.09004 * 109.46889 * 299.99877 * 7 5 4 33 33 H 1.09008 * 109.46978 * 59.99475 * 7 5 4 34 34 H 0.97002 * 119.99460 * 180.02562 * 12 11 9 35 35 H 1.09001 * 110.71391 * 35.21050 * 19 17 2 36 36 H 1.09001 * 110.71979 * 272.11917 * 19 17 2 37 37 H 1.09003 * 109.87838 * 97.14329 * 20 19 17 38 38 H 1.08995 * 109.88537 * 218.14520 * 20 19 17 39 39 H 0.97008 * 120.00025 * 359.97438 * 25 24 22 40 40 H 0.97000 * 120.00719 * 180.02562 * 25 24 22 41 41 H 1.08997 * 110.36605 * 142.97096 * 27 21 20 42 42 H 1.08999 * 110.36590 * 265.18057 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6487 -0.7287 -3.5879 8 16 2.7091 0.4343 -4.9735 9 6 3.3123 -0.6308 -6.2409 10 1 3.5216 -1.6673 -6.0209 11 6 3.5185 -0.1379 -7.5219 12 7 3.2630 1.1253 -7.7900 13 14 4.1573 -1.2673 -8.8656 14 1 3.2059 -2.3903 -9.0622 15 1 4.2898 -0.5038 -10.1324 16 1 5.4837 -1.8056 -8.4706 17 6 2.0400 -0.7213 1.2491 18 1 1.6628 -1.7431 1.2897 19 6 3.5902 -0.6980 1.3109 20 6 3.8818 -0.8075 2.8224 21 7 2.6792 -0.3496 3.5333 22 6 2.5248 -0.3106 4.8717 23 8 1.4839 0.0884 5.3510 24 6 3.6356 -0.7590 5.7652 25 7 3.4812 -0.7206 7.1035 26 8 4.6767 -1.1577 5.2858 27 6 1.6703 0.0610 2.5397 28 1 -0.3634 -1.0238 0.0889 29 1 -0.3633 0.5889 0.8422 30 1 -0.3633 0.4349 -0.9311 31 1 2.2489 -1.6317 -1.1527 32 1 3.6479 -1.1213 -3.3988 33 1 1.9757 -1.5505 -3.8327 34 1 3.4068 1.4696 -8.6854 35 1 3.9779 0.2387 0.9103 36 1 4.0104 -1.5486 0.7743 37 1 4.0953 -1.8438 3.0845 38 1 4.7318 -0.1769 3.0827 39 1 2.6491 -0.4015 7.4868 40 1 4.2022 -1.0113 7.6836 41 1 0.6713 -0.2151 2.8772 42 1 1.7269 1.1351 2.3633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051469846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:11 Heat of formation + Delta-G solvation = -109.238648 kcal Electronic energy + Delta-G solvation = -25168.338022 eV Core-core repulsion = 21274.525731 eV Total energy + Delta-G solvation = -3893.812290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.18117 -39.77481 -38.88041 -38.00368 -35.45481 -34.13788 -32.43881 -32.20194 -30.89785 -29.22032 -28.14861 -26.16178 -25.48843 -23.56560 -22.50084 -20.75427 -20.44272 -20.14539 -18.52944 -17.84811 -17.59339 -16.94703 -16.77755 -16.42009 -16.05875 -15.21092 -14.97384 -14.92187 -14.80968 -14.40124 -14.15693 -13.91159 -13.63830 -13.44070 -13.22281 -13.12808 -12.87998 -12.63622 -12.43463 -12.05776 -11.93660 -11.64571 -11.39977 -11.10848 -11.05351 -11.04423 -10.92440 -10.76826 -10.39259 -10.07876 -9.83253 -9.41636 -9.19999 -9.07374 -8.94983 -8.25153 -6.50984 -6.22392 -3.93086 0.97240 1.92225 2.75484 2.98908 3.07132 3.19650 3.22887 3.26707 3.29575 3.63892 4.00145 4.12695 4.19840 4.24142 4.38182 4.85627 4.87392 4.93625 5.10234 5.12819 5.15088 5.26747 5.31240 5.46692 5.50025 5.53559 5.59950 5.65574 5.67923 5.83028 5.87257 5.98789 6.00496 6.12395 6.18181 6.44738 6.61416 6.80915 7.23619 7.54667 7.58378 7.68097 8.34096 8.59287 9.22869 10.84918 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.002001 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.735816 B =13987.783299 C =14580.624708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.156 3.844 3 H 0.092 0.908 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.109 4.109 18 H 0.093 0.907 19 C -0.131 4.131 20 C 0.105 3.895 21 N -0.587 5.587 22 C 0.518 3.482 23 O -0.523 6.523 24 C 0.516 3.484 25 N -0.823 5.823 26 O -0.515 6.515 27 C 0.113 3.887 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.414 0.586 40 H 0.411 0.589 41 H 0.088 0.912 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -6.765 28.030 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 H 0.110 0.890 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.128 4.128 18 H 0.112 0.888 19 C -0.169 4.169 20 C -0.017 4.017 21 N -0.321 5.321 22 C 0.301 3.699 23 O -0.400 6.400 24 C 0.294 3.706 25 N -0.390 5.390 26 O -0.390 6.390 27 C -0.009 4.009 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.244 0.756 40 H 0.244 0.756 41 H 0.106 0.894 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.656 -4.644 27.648 28.085 hybrid contribution 0.800 -2.567 -0.313 2.707 sum -0.855 -7.211 27.336 28.284 Atomic orbital electron populations 1.22236 0.95071 1.02089 1.03089 1.20733 0.94114 0.97335 0.82732 0.88984 1.46021 1.69497 1.13889 1.09345 1.20293 0.76769 0.87208 0.83693 1.90705 1.48189 1.15767 1.84348 1.23537 1.03656 1.04873 0.98380 1.85396 1.86314 1.12852 0.98748 1.22826 1.51097 0.98131 0.96415 0.90989 1.24990 0.95092 0.95538 0.97952 1.70008 1.45432 1.13217 1.21610 0.86227 0.79310 0.80017 0.79965 1.19955 1.20817 1.19938 1.22756 0.96145 1.00465 0.93480 0.88841 1.22808 0.95071 1.04409 0.94562 1.22270 0.86917 1.01233 0.91250 1.48266 1.17769 1.61830 1.04226 1.19714 0.87917 0.80245 0.82064 1.90785 1.28447 1.46402 1.74361 1.20015 0.87685 0.78887 0.84003 1.43513 1.21966 1.67305 1.06178 1.90828 1.28272 1.44834 1.75067 1.22445 0.92454 0.99675 0.86312 0.92454 0.91757 0.91338 0.76890 0.89242 0.89267 0.92125 0.89730 0.89273 0.90154 0.90121 0.75560 0.75599 0.89391 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.26 37.16 0.34 -1.29 16 2 C 0.16 1.57 2.10 -67.93 -0.14 1.42 16 3 H 0.09 1.11 7.56 -51.93 -0.39 0.71 16 4 N -0.73 -8.55 4.79 -53.81 -0.26 -8.81 16 5 C 0.53 9.25 7.81 -10.98 -0.09 9.16 16 6 O -0.52 -11.07 15.52 5.56 0.09 -10.98 16 7 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 10 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 13 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.11 -0.80 2.64 -88.21 -0.23 -1.03 16 18 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 19 C -0.13 -0.95 6.13 -24.90 -0.15 -1.10 16 20 C 0.11 0.83 5.49 -3.07 -0.02 0.82 16 21 N -0.59 -5.18 3.33 -170.73 -0.57 -5.75 16 22 C 0.52 4.99 7.91 -11.58 -0.09 4.90 16 23 O -0.52 -5.98 16.73 5.50 0.09 -5.89 16 24 C 0.52 4.32 8.13 -11.59 -0.09 4.23 16 25 N -0.82 -3.88 8.87 30.90 0.27 -3.61 16 26 O -0.52 -5.43 14.96 5.50 0.08 -5.35 16 27 C 0.11 0.91 5.65 -2.27 -0.01 0.89 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.40 3.52 8.60 -40.82 -0.35 3.17 16 32 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 33 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.64 7.58 -51.93 -0.39 0.25 16 38 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 39 H 0.41 1.44 8.30 -40.82 -0.34 1.10 16 40 H 0.41 1.11 8.93 -40.82 -0.36 0.75 16 41 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 42 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -36.46 370.54 -7.25 -43.71 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.97 Total: 1.45 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.07 Total: 2.47 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.18 Total: -43.38 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.26 Total: -22.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.46 -7.25 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051469846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.529 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds