Wall clock time and date at job start Tue Mar 31 2020 07:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47030 * 2 1 4 4 N 1.46502 * 109.46967 * 119.99450 * 2 1 3 5 5 C 1.34768 * 120.00282 * 275.00335 * 4 2 1 6 6 O 1.21279 * 119.99986 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00307 * 180.02562 * 5 4 2 8 8 S 1.80995 * 109.47498 * 179.97438 * 7 5 4 9 9 C 1.76195 * 100.00296 * 179.97438 * 8 7 5 10 10 H 1.07996 * 120.00025 * 359.97438 * 9 8 7 11 11 C 1.38796 * 120.00172 * 180.02562 * 9 8 7 12 12 N 1.31634 * 120.00471 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00180 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46946 * 59.99762 * 13 11 9 15 15 H 1.48500 * 109.47085 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46888 * 299.99855 * 13 11 9 17 17 C 1.53000 * 109.47225 * 239.99470 * 2 1 3 18 18 H 1.08992 * 110.88735 * 301.85534 * 17 2 1 19 19 C 1.55162 * 111.00355 * 177.97497 * 17 2 1 20 20 C 1.54324 * 102.94211 * 206.42826 * 19 17 2 21 21 N 1.47022 * 107.27219 * 22.18870 * 20 19 17 22 22 C 1.34772 * 125.64875 * 181.01520 * 21 20 19 23 23 O 1.21353 * 120.00115 * 180.02562 * 22 21 20 24 24 C 1.49449 * 120.00014 * 0.02778 * 22 21 20 25 25 N 1.34772 * 120.00014 * 179.97438 * 24 22 21 26 26 O 1.21349 * 119.99996 * 359.97438 * 24 22 21 27 27 C 1.47426 * 108.70212 * 1.06404 * 21 20 19 28 28 H 1.09007 * 109.46891 * 175.01579 * 1 2 3 29 29 H 1.08994 * 109.46995 * 295.01595 * 1 2 3 30 30 H 1.08997 * 109.46708 * 55.02071 * 1 2 3 31 31 H 0.97004 * 119.99379 * 95.00231 * 4 2 1 32 32 H 1.09000 * 109.47049 * 59.99628 * 7 5 4 33 33 H 1.09000 * 109.47350 * 299.99873 * 7 5 4 34 34 H 0.96991 * 120.00642 * 180.02562 * 12 11 9 35 35 H 1.09006 * 110.71470 * 324.78696 * 19 17 2 36 36 H 1.08995 * 110.71806 * 87.88119 * 19 17 2 37 37 H 1.08993 * 109.88117 * 141.60823 * 20 19 17 38 38 H 1.08999 * 109.87992 * 262.77550 * 20 19 17 39 39 H 0.97002 * 120.00475 * 0.02562 * 25 24 22 40 40 H 0.97004 * 119.99955 * 179.97438 * 25 24 22 41 41 H 1.09008 * 110.36471 * 217.03091 * 27 21 20 42 42 H 1.09005 * 110.36808 * 94.70941 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4114 7 6 2.6498 -0.7283 3.5875 8 16 2.7112 0.4349 4.9729 9 6 3.3142 -0.6303 6.2403 10 1 3.5228 -1.6668 6.0206 11 6 3.5200 -0.1374 7.5214 12 7 3.2653 1.1259 7.7895 13 14 4.1600 -1.2665 8.8650 14 1 5.4867 -1.8037 8.4698 15 1 4.2918 -0.5031 10.1319 16 1 3.2094 -2.3903 9.0615 17 6 2.0401 -0.7214 -1.2492 18 1 1.6629 -1.7432 -1.2890 19 6 3.5903 -0.6979 -1.3109 20 6 3.8776 -0.8053 -2.8234 21 7 2.6723 -0.3480 -3.5302 22 6 2.5141 -0.3075 -4.8680 23 8 1.4713 0.0908 -5.3439 24 6 3.6229 -0.7532 -5.7654 25 7 3.4645 -0.7132 -7.1032 26 8 4.6659 -1.1511 -5.2896 27 6 1.6658 0.0601 -2.5333 28 1 -0.3633 -1.0239 -0.0893 29 1 -0.3633 0.4345 0.9312 30 1 -0.3632 0.5891 -0.8420 31 1 2.2491 -1.6317 1.1527 32 1 3.6492 -1.1201 3.3980 33 1 1.9777 -1.5506 3.8327 34 1 3.4095 1.4705 8.6846 35 1 3.9780 0.2388 -0.9103 36 1 4.0105 -1.5485 -0.7744 37 1 4.7243 -0.1711 -3.0858 38 1 4.0916 -1.8410 -3.0874 39 1 2.6310 -0.3948 -7.4837 40 1 4.1844 -1.0022 -7.6857 41 1 0.6661 -0.2169 -2.8681 42 1 1.7229 1.1338 -2.3542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051469847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:20 Heat of formation + Delta-G solvation = -109.230797 kcal Electronic energy + Delta-G solvation = -25172.871899 eV Core-core repulsion = 21279.059949 eV Total energy + Delta-G solvation = -3893.811950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 20.63 seconds Orbital eigenvalues (eV) -41.18767 -39.78456 -38.88272 -38.01106 -35.45475 -34.13745 -32.43860 -32.20771 -30.90046 -29.23074 -28.14844 -26.15833 -25.48950 -23.56333 -22.50524 -20.75508 -20.44436 -20.14259 -18.53004 -17.84913 -17.59397 -16.95043 -16.77859 -16.41996 -16.05841 -15.20796 -14.97453 -14.92276 -14.80984 -14.40035 -14.15986 -13.91059 -13.64158 -13.43900 -13.22419 -13.12944 -12.87983 -12.63552 -12.43685 -12.05822 -11.93656 -11.65220 -11.40471 -11.10580 -11.05383 -11.04419 -10.92472 -10.76828 -10.39192 -10.07777 -9.83261 -9.41622 -9.20054 -9.07374 -8.94966 -8.25148 -6.50985 -6.22329 -3.93094 0.97350 1.92339 2.75591 2.99056 3.07160 3.19666 3.22883 3.26728 3.29614 3.64180 4.00137 4.12477 4.19830 4.24231 4.38715 4.86148 4.87424 4.93486 5.10174 5.12811 5.14982 5.26651 5.31126 5.46584 5.49935 5.53650 5.59917 5.65621 5.67917 5.82990 5.87273 5.98711 6.00523 6.12428 6.18103 6.44805 6.61389 6.80947 7.23711 7.54752 7.58409 7.68109 8.34127 8.59305 9.22886 10.84978 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029792 B = 0.002002 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.608989 B =13983.933438 C =14574.499630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.156 3.844 3 H 0.092 0.908 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.109 4.109 18 H 0.093 0.907 19 C -0.130 4.130 20 C 0.106 3.894 21 N -0.587 5.587 22 C 0.518 3.482 23 O -0.523 6.523 24 C 0.515 3.485 25 N -0.823 5.823 26 O -0.515 6.515 27 C 0.113 3.887 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.414 0.586 40 H 0.411 0.589 41 H 0.088 0.912 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -6.764 -28.027 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 H 0.110 0.890 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.129 4.129 18 H 0.112 0.888 19 C -0.168 4.168 20 C -0.017 4.017 21 N -0.321 5.321 22 C 0.301 3.699 23 O -0.400 6.400 24 C 0.294 3.706 25 N -0.390 5.390 26 O -0.390 6.390 27 C -0.009 4.009 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.244 0.756 40 H 0.244 0.756 41 H 0.106 0.894 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.672 -4.642 -27.646 28.083 hybrid contribution 0.793 -2.567 0.316 2.705 sum -0.878 -7.209 -27.330 28.278 Atomic orbital electron populations 1.22239 0.95074 1.02090 1.03092 1.20747 0.94115 0.97336 0.82740 0.88983 1.46022 1.69491 1.13895 1.09342 1.20290 0.76770 0.87209 0.83694 1.90705 1.48217 1.15747 1.84346 1.23534 1.03648 1.04875 0.98391 1.85395 1.86324 1.12817 0.98773 1.22824 1.51113 0.98128 0.96404 0.90988 1.24990 0.95088 0.95537 0.97947 1.70002 1.45447 1.13202 1.21627 0.86230 0.79316 0.80018 0.79969 1.19936 1.20815 1.19955 1.22683 0.96176 1.00498 0.93542 0.88842 1.22810 0.95043 1.04421 0.94551 1.22273 0.86828 1.01236 0.91323 1.48277 1.17723 1.61873 1.04231 1.19712 0.87918 0.80235 0.82079 1.90785 1.28285 1.46401 1.74530 1.20019 0.87692 0.78872 0.84012 1.43513 1.21905 1.67364 1.06180 1.90828 1.28105 1.44828 1.75243 1.22373 0.92533 0.99717 0.86254 0.92453 0.91336 0.91754 0.76888 0.89242 0.89270 0.92120 0.89728 0.89243 0.90126 0.90131 0.75561 0.75600 0.89365 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.25 37.16 0.34 -1.29 16 2 C 0.16 1.56 2.09 -67.93 -0.14 1.42 16 3 H 0.09 1.11 7.55 -51.93 -0.39 0.71 16 4 N -0.73 -8.55 4.79 -53.81 -0.26 -8.81 16 5 C 0.53 9.25 7.81 -10.99 -0.09 9.16 16 6 O -0.52 -11.07 15.52 5.56 0.09 -10.98 16 7 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 10 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 13 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.11 -0.80 2.63 -88.47 -0.23 -1.03 16 18 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 19 C -0.13 -0.95 6.14 -24.89 -0.15 -1.10 16 20 C 0.11 0.83 5.49 -3.06 -0.02 0.82 16 21 N -0.59 -5.18 3.33 -171.02 -0.57 -5.75 16 22 C 0.52 5.00 7.91 -11.59 -0.09 4.90 16 23 O -0.52 -5.98 16.73 5.49 0.09 -5.89 16 24 C 0.52 4.32 8.13 -11.59 -0.09 4.23 16 25 N -0.82 -3.88 8.87 30.90 0.27 -3.61 16 26 O -0.52 -5.43 14.96 5.50 0.08 -5.35 16 27 C 0.11 0.91 5.60 -2.53 -0.01 0.89 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.40 3.52 8.60 -40.82 -0.35 3.17 16 32 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 33 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 38 H 0.08 0.64 7.58 -51.93 -0.39 0.25 16 39 H 0.41 1.44 8.30 -40.82 -0.34 1.10 16 40 H 0.41 1.11 8.93 -40.82 -0.36 0.75 16 41 H 0.09 0.70 8.04 -51.92 -0.42 0.28 16 42 H 0.08 0.66 8.01 -51.93 -0.42 0.24 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -36.47 370.43 -7.25 -43.71 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.97 Total: 1.46 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.07 Total: 2.47 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.18 Total: -43.39 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.26 Total: -22.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.47 -7.25 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051469847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.518 kcal (2) G-P(sol) polarization free energy of solvation -36.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.63 seconds