Wall clock time and date at job start Tue Mar 31 2020 07:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 110.29989 * 2 1 4 4 C 1.54385 * 110.43292 * 237.76625 * 2 1 3 5 5 N 1.48146 * 104.61914 * 264.95209 * 4 2 1 6 6 C 1.34768 * 127.84223 * 140.41166 * 5 4 2 7 7 O 1.21286 * 120.00296 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.00005 * 0.02562 * 6 5 4 9 9 S 1.81002 * 109.47351 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00274 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99786 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00230 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00242 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99810 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46657 * 90.00554 * 14 12 10 16 16 H 1.48502 * 109.47077 * 210.00221 * 14 12 10 17 17 H 1.48495 * 109.47299 * 330.00322 * 14 12 10 18 18 C 1.48157 * 104.31952 * 320.41101 * 5 4 2 19 19 C 1.54279 * 110.34227 * 122.17530 * 2 1 3 20 20 H 1.09005 * 110.34244 * 237.94931 * 19 2 1 21 21 C 1.52996 * 110.34724 * 0.10297 * 19 2 1 22 22 N 1.46496 * 109.47521 * 184.99783 * 21 19 2 23 23 C 1.34777 * 120.00344 * 179.97438 * 22 21 19 24 24 O 1.21353 * 119.99672 * 0.02562 * 23 22 21 25 25 C 1.49446 * 120.00342 * 180.02562 * 23 22 21 26 26 N 1.34777 * 120.00341 * 180.02562 * 25 23 22 27 27 O 1.21353 * 119.99982 * 0.02562 * 25 23 22 28 28 H 1.09001 * 109.46880 * 297.82340 * 1 2 3 29 29 H 1.08995 * 109.47183 * 57.82434 * 1 2 3 30 30 H 1.09000 * 109.46838 * 177.82629 * 1 2 3 31 31 H 1.09004 * 110.40563 * 23.72926 * 4 2 1 32 32 H 1.09002 * 110.41133 * 146.16322 * 4 2 1 33 33 H 1.09000 * 109.47366 * 299.99606 * 8 6 5 34 34 H 1.09003 * 109.47328 * 60.00157 * 8 6 5 35 35 H 0.96994 * 120.00560 * 179.97438 * 13 12 10 36 36 H 1.08998 * 110.40620 * 280.80304 * 18 5 4 37 37 H 1.08996 * 110.40300 * 158.36619 * 18 5 4 38 38 H 1.09007 * 109.46700 * 64.99848 * 21 19 2 39 39 H 1.08998 * 109.47615 * 305.00436 * 21 19 2 40 40 H 0.97004 * 120.00009 * 0.02562 * 22 21 19 41 41 H 0.97001 * 120.00485 * 180.02562 * 26 25 23 42 42 H 0.97005 * 119.99790 * 359.72222 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7213 6 6 2.0835 -3.3101 -1.3529 7 8 2.3428 -4.3598 -0.8034 8 6 1.4993 -3.3111 -2.7421 9 16 1.3055 -5.0174 -3.3140 10 6 0.6257 -4.7287 -4.9137 11 1 0.4551 -3.7178 -5.2534 12 6 0.3085 -5.8003 -5.7367 13 7 -0.1988 -5.5846 -6.9320 14 14 0.6031 -7.5487 -5.1488 15 1 -0.6092 -8.0468 -4.4505 16 1 0.8960 -8.4204 -6.3148 17 1 1.7564 -7.5688 -4.2136 18 6 2.8826 -1.9400 0.6333 19 6 2.0664 -0.7703 1.2244 20 1 2.7067 -0.1259 1.8269 21 6 0.9063 -1.3037 2.0673 22 7 1.4328 -1.9269 3.2841 23 6 0.5879 -2.4692 4.1833 24 8 -0.6090 -2.4415 3.9848 25 6 1.1250 -3.1045 5.4248 26 7 0.2801 -3.6472 6.3238 27 8 2.3218 -3.1318 5.6235 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0390 31 1 1.3253 -0.7880 -2.0205 32 1 2.9969 -0.3225 -1.5779 33 1 0.5265 -2.8197 -2.7275 34 1 2.1668 -2.7756 -3.4173 35 1 -0.4201 -6.3334 -7.5074 36 1 3.9375 -1.6732 0.5692 37 1 2.7525 -2.8377 1.2376 38 1 0.3492 -2.0432 1.4920 39 1 0.2450 -0.4805 2.3377 40 1 2.3895 -1.9487 3.4429 41 1 0.6287 -4.0593 7.1298 42 1 -0.6768 -3.6219 6.1669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052049077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:49 Heat of formation + Delta-G solvation = -104.699303 kcal Electronic energy + Delta-G solvation = -25748.355288 eV Core-core repulsion = 21854.739838 eV Total energy + Delta-G solvation = -3893.615450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01173 -40.20282 -38.70918 -37.89087 -35.43438 -33.96773 -32.93400 -32.44611 -30.86672 -29.33968 -27.07159 -26.34157 -25.61778 -24.42741 -22.81889 -20.90583 -19.89060 -19.49935 -18.81777 -17.72514 -17.59007 -16.94707 -16.73057 -16.38453 -16.07692 -15.77157 -15.16836 -14.87484 -14.79298 -14.43678 -14.26527 -14.03786 -13.73966 -13.57504 -13.06730 -12.91255 -12.81583 -12.77941 -12.25161 -12.11282 -11.99775 -11.90933 -11.30553 -11.24081 -11.06628 -11.01460 -10.87791 -10.60460 -10.31010 -10.05912 -9.86707 -9.55802 -9.54009 -9.01189 -8.71942 -8.50852 -6.93277 -6.29730 -4.01662 1.06233 2.12263 2.64608 2.86808 2.90383 3.16824 3.33047 3.47961 3.50348 3.58318 4.09268 4.15768 4.23114 4.26466 4.32755 4.67413 4.80639 4.91617 4.95721 5.09395 5.10417 5.13452 5.24465 5.36981 5.43471 5.52165 5.59057 5.61016 5.70582 5.75647 5.78159 5.87092 5.97705 6.02836 6.06784 6.26044 6.49030 6.90629 7.41340 7.57354 7.63842 7.93308 8.39781 8.40651 9.16498 10.79476 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.002877 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.617448 B = 9728.380202 C =10802.309129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.102 3.898 5 N -0.627 5.627 6 C 0.553 3.447 7 O -0.517 6.517 8 C -0.117 4.117 9 S -0.142 6.142 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.106 3.894 19 C -0.114 4.114 20 H 0.096 0.904 21 C 0.122 3.878 22 N -0.698 5.698 23 C 0.505 3.495 24 O -0.517 6.517 25 C 0.515 3.485 26 N -0.822 5.822 27 O -0.522 6.522 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.412 0.588 41 H 0.411 0.589 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 14.454 22.944 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.022 4.022 5 N -0.364 5.364 6 C 0.341 3.659 7 O -0.391 6.391 8 C -0.268 4.268 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.018 4.018 19 C -0.133 4.133 20 H 0.114 0.886 21 C -0.001 4.001 22 N -0.351 5.351 23 C 0.285 3.715 24 O -0.393 6.393 25 C 0.293 3.707 26 N -0.388 5.388 27 O -0.397 6.397 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.249 0.751 41 H 0.244 0.756 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.224 12.787 23.309 26.781 hybrid contribution -0.190 0.327 -0.367 0.527 sum 3.035 13.114 22.941 26.599 Atomic orbital electron populations 1.22006 0.93966 1.02933 1.02322 1.22076 0.96884 0.99223 0.93236 0.88991 1.22514 1.01119 0.81768 0.96761 1.48924 1.64914 1.05571 1.16991 1.19967 0.77211 0.81626 0.87061 1.90720 1.51138 1.30112 1.67099 1.23245 1.03752 1.05015 0.94746 1.84817 1.83968 1.02965 1.19824 1.22295 1.48053 0.97677 0.98776 0.89379 1.24704 0.93318 0.99290 0.93958 1.69931 1.41213 1.32434 1.08099 0.86742 0.81249 0.84146 0.79770 1.19188 1.19919 1.15929 1.22353 0.96865 0.98155 0.84389 1.22436 0.96836 0.97407 0.96648 0.88607 1.21807 0.96206 0.98195 0.83877 1.45830 1.11195 1.57222 1.20878 1.20017 0.86772 0.80043 0.84665 1.90795 1.14791 1.56784 1.76927 1.20137 0.86551 0.79220 0.84763 1.43525 1.11749 1.59766 1.23787 1.90826 1.14924 1.57035 1.76951 0.91931 0.91858 0.91766 0.89469 0.90732 0.88583 0.88527 0.91924 0.90785 0.89707 0.90039 0.89968 0.75133 0.75639 0.75474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 7.92 37.16 0.29 -0.85 16 2 C -0.09 -0.63 3.65 -89.22 -0.33 -0.95 16 3 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 4 C 0.10 0.92 6.47 -2.41 -0.02 0.90 16 5 N -0.63 -8.06 3.32 -169.30 -0.56 -8.62 16 6 C 0.55 10.00 7.93 -10.99 -0.09 9.92 16 7 O -0.52 -11.38 16.13 5.55 0.09 -11.29 16 8 C -0.12 -2.28 5.14 36.01 0.18 -2.10 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 11 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 12 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 13 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 14 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 18 C 0.11 1.06 6.47 -2.40 -0.02 1.05 16 19 C -0.11 -0.79 3.10 -89.22 -0.28 -1.07 16 20 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 21 C 0.12 1.05 3.81 -4.05 -0.02 1.03 16 22 N -0.70 -6.21 5.15 -60.73 -0.31 -6.53 16 23 C 0.51 5.28 7.89 -11.59 -0.09 5.19 16 24 O -0.52 -6.54 16.48 5.49 0.09 -6.45 16 25 C 0.51 4.89 8.16 -11.59 -0.09 4.80 16 26 N -0.82 -4.97 8.87 30.90 0.27 -4.70 16 27 O -0.52 -6.17 17.31 5.49 0.10 -6.08 16 28 H 0.06 0.40 6.68 -51.93 -0.35 0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.62 6.94 -51.93 -0.36 0.26 16 31 H 0.09 0.82 7.03 -51.93 -0.36 0.46 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.75 7.95 -51.92 -0.41 1.33 16 34 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.02 7.31 -51.93 -0.38 0.64 16 38 H 0.08 0.94 7.10 -51.93 -0.37 0.57 16 39 H 0.08 0.65 6.49 -51.93 -0.34 0.31 16 40 H 0.41 3.15 7.89 -40.82 -0.32 2.83 16 41 H 0.41 1.65 8.93 -40.82 -0.36 1.28 16 42 H 0.41 2.03 8.30 -40.82 -0.34 1.69 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -37.41 364.33 -6.70 -44.12 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.71 Total: 2.31 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.23 Total: 5.98 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.17 Total: -45.62 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.28 Total: -23.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.41 -6.70 -44.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052049077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.582 kcal (2) G-P(sol) polarization free energy of solvation -37.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds